mRNA_E-fasciculatus_F_contig14141.3037.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14141.3037.1
Unique NamemRNA_E-fasciculatus_F_contig14141.3037.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14141.3037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14141contigE-fasciculatus_F_contig14141:1894..2700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927905.809099-CDS-E-fasciculatus_F_contig14141:1893..19741622927905.809099-CDS-E-fasciculatus_F_contig14141:1893..1974Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14141 1894..1974 +
1695995746.2802253-CDS-E-fasciculatus_F_contig14141:1893..19741695995746.2802253-CDS-E-fasciculatus_F_contig14141:1893..1974Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14141 1894..1974 +
1622927905.826705-CDS-E-fasciculatus_F_contig14141:2592..27001622927905.826705-CDS-E-fasciculatus_F_contig14141:2592..2700Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14141 2593..2700 +
1695995746.2918086-CDS-E-fasciculatus_F_contig14141:2592..27001695995746.2918086-CDS-E-fasciculatus_F_contig14141:2592..2700Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14141 2593..2700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14141.3037.1prot_E-fasciculatus_F_contig14141.3037.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14141 1894..2700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14141.3037.1

>prot_E-fasciculatus_F_contig14141.3037.1 ID=prot_E-fasciculatus_F_contig14141.3037.1|Name=mRNA_E-fasciculatus_F_contig14141.3037.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=63bp
EKACLYPRTTWHSIRGSGECALTRFAEISKTGSGRPKPEKPVGAAAASRT
RSGVAVVGRHPT*
back to top

mRNA from alignment at E-fasciculatus_F_contig14141:1894..2700+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14141.3037.1 ID=mRNA_E-fasciculatus_F_contig14141.3037.1|Name=mRNA_E-fasciculatus_F_contig14141.3037.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=807bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14141:1894..2700+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGAAGGCTTGTTTGTACCCGCGGACGACCTGGCATTCGATCAGGGGCTC
CGGTGAATGCGCCTTGACAAGGTTCGCAGAGGTATGTACCAGCGTGGGCT
GGACTGCGCTCGTCGGCGTCGTCTGTTGGTGGTGGTGCTGTTGGTGCTGA
CCTTGCTTCATTTGTTCGTGGGTGTTGATGGGAGAGAGCGTGTTCTTCAT
CTACTTCCAGTTTTTGTCACCAACGGTCTTGAAAACGTTGGGGTCTCGAG
GCGAGCGGGGGCGGAGAGACGTGTTGGGGAAAAGCATGGTGCTGTCGCAC
GCAGGGGTGTTGGGGGTGCAGGGGGATGGGTCAACGCCGCCGGTCGGGTT
GTCAGTCGATGGCGTGTGTGGGGAAACAAGGGCGAGGTTGCGAAGGAGGC
CTCTTATTTTCTCCACCCGCTGCTGCTGCCTGCTCACAAGCGTTATATTC
TTCGGTTATGTTGAGGTCGCGCAGAATGATCATCTCCCCGGCCCACCCGC
CCAACATGGCTCTGTCCCTCGGCCCCTTACCTCGAGCCGTTGGCGGAAGG
TTGTAGATTCTACGCGGAGTGCCGCTGAAGAGGCCAGATAGGCAAACCAT
CCAATCTAATAGATTGCAGCAACGCCCTGTTGTTCACACGTCTCCTCCCA
CGTTGACCCCCTTTTCCGATACTCGTCCGTGCCCCCCCCCCCCTACAAGA
TAAGTAAGACCGGAAGCGGTCGTCCCAAGCCTGAAAAACCGGTCGGTGCA
GCGGCGGCGTCCAGGACGAGGTCGGGGGTGGCGGTGGTAGGTCGGCACCC
AACCTGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14141:1894..2700+

>mRNA_E-fasciculatus_F_contig14141.3037.1 ID=mRNA_E-fasciculatus_F_contig14141.3037.1|Name=mRNA_E-fasciculatus_F_contig14141.3037.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=378bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14141:1894..2700+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGAAGGCTTGTTTGTACCCGCGGACGACCTGGCATTCGATCAGGGGCTC
CGGTGAATGCGCCTTGACAAGGTTCGCAGAGGAGAAGGCTTGTTTGTACC
CGCGGACGACCTGGCATTCGATCAGGGGCTCCGGTGAATGCGCCTTGACA
AGGTTCGCAGAGATAAGTAAGACCGGAAGCGGTCGTCCCAAGCCTGAAAA
ACCGGTCGGTGCAGCGGCGGCGTCCAGGACGAGGTCGGGGGTGGCGGTGG
TAGGTCGGCACCCAACCTGAATAAGTAAGACCGGAAGCGGTCGTCCCAAG
CCTGAAAAACCGGTCGGTGCAGCGGCGGCGTCCAGGACGAGGTCGGGGGT
GGCGGTGGTAGGTCGGCACCCAACCTGA
back to top