mRNA_E-fasciculatus_F_contig14141.3036.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14141.3036.1
Unique NamemRNA_E-fasciculatus_F_contig14141.3036.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14141.3036.1 vs. uniprot
Match: A0A6H5JXQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXQ5_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 7.930e-8
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 3 
Query:   39 QFPRPLAAFQRGKDGVSALVRGKGE--ATGGHVAREESGESVAG 164
            + PRPLAAFQRGKDG SA VRGKG+  ATGG   +EE+GES AG
Sbjct:  265 KLPRPLAAFQRGKDGASAPVRGKGKGKATGGPAVKEEAGESGAG 308
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BLAST of mRNA_E-fasciculatus_F_contig14141.3036.1 vs. uniprot
Match: D8LHB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB7_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 1.820e-6
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 3 
Query:   39 QFPRPLAAFQRGKDGVSALVRGKGE----ATGGHVAREESGESVAG 164
            + PRPLAA QRGKDG SA VRGKG+    ATGG   +EE+GES AG
Sbjct:  328 KLPRPLAACQRGKDGASAPVRGKGKXXXXATGGPAVKEEAGESGAG 373
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14141.3036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXQ5_9PHAE7.930e-870.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHB7_ECTSI1.820e-665.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14141contigE-fasciculatus_F_contig14141:1200..1868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size187
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927905.7396896-CDS-E-fasciculatus_F_contig14141:1199..13191622927905.7396896-CDS-E-fasciculatus_F_contig14141:1199..1319Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14141 1200..1319 +
1695995746.2610946-CDS-E-fasciculatus_F_contig14141:1199..13191695995746.2610946-CDS-E-fasciculatus_F_contig14141:1199..1319Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14141 1200..1319 +
1622927905.7586238-CDS-E-fasciculatus_F_contig14141:1801..18671622927905.7586238-CDS-E-fasciculatus_F_contig14141:1801..1867Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14141 1802..1867 +
1695995746.2703915-CDS-E-fasciculatus_F_contig14141:1801..18671695995746.2703915-CDS-E-fasciculatus_F_contig14141:1801..1867Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14141 1802..1867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14141.3036.1prot_E-fasciculatus_F_contig14141.3036.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14141 1200..1867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14141.3036.1

>prot_E-fasciculatus_F_contig14141.3036.1 ID=prot_E-fasciculatus_F_contig14141.3036.1|Name=mRNA_E-fasciculatus_F_contig14141.3036.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=62bp
EEASSLFFVQLPTNFRGRWPRSRGERTAFPRSCAARGKRQEATWQGRNRG
NRSREKQLPGLA
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mRNA from alignment at E-fasciculatus_F_contig14141:1200..1868+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14141.3036.1 ID=mRNA_E-fasciculatus_F_contig14141.3036.1|Name=mRNA_E-fasciculatus_F_contig14141.3036.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=669bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14141:1200..1868+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGGAAGCCAGCAGCCTCTTCTTCGTGCAGTTGCCGACCAATTTCCGAGG
CCGCTGGCCGCGTTCCAGAGGGGAAAGGACGGCGTTTCCGCGCTCGTGCG
CGGCAAGGGGGAAGCGACAGGCGAGCGGTTGCGGACGGGTGGATTTGTTT
TCGGTCTTTGGGGGTCACAATGATATGTCTTTCGCCTTTCTCGCGAGAGG
GAAGGGACGGTTGCTGTAGCGCTCACAACTTTCTGCCGTACCTTGGTATG
TGTGTTTGGTAAACCTGCAGTGCTGTTGGTGAGCTGTTAATTTTTGGCGC
GTCATTGCCGGATAAATGTTGGCGTGTTACAAGGGGGAGAAAGGAGCCTA
GGTAGAGGGTCGGTCAGAGCGTGCTTTCTTGTGAAGCACCACAACAACAA
ATGCACCATCACCACCACTACCAACAACAGCAACAGCAGCAACAGCAACA
AAAATAGCACCAACCTCCTAAACCGCCAGTGCCTGGACATGACTCGCCCA
AAACGTGTCTCCGCTGCACACCTGTTAACCCTCTCCCCTAATCTTCATGT
TCGTTTTGCACCCCCCCTTCTCTTTTTCCTGGTCTTTCCCTTCCGAAAGC
AGGAGGCCACGTGGCAAGGGAGGAATCGGGGGAATCGGTCGCGGGAGAAG
CAGCTGCCGGGGCTAGCGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14141:1200..1868+

>mRNA_E-fasciculatus_F_contig14141.3036.1 ID=mRNA_E-fasciculatus_F_contig14141.3036.1|Name=mRNA_E-fasciculatus_F_contig14141.3036.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=372bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14141:1200..1868+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGGAAGCCAGCAGCCTCTTCTTCGTGCAGTTGCCGACCAATTTCCGAGG
CCGCTGGCCGCGTTCCAGAGGGGAAAGGACGGCGTTTCCGCGCTCGTGCG
CGGCAAGGGGGAAGCGACAGGAGGAAGCCAGCAGCCTCTTCTTCGTGCAG
TTGCCGACCAATTTCCGAGGCCGCTGGCCGCGTTCCAGAGGGGAAAGGAC
GGCGTTTCCGCGCTCGTGCGCGGCAAGGGGGAAGCGACAGGAGGCCACGT
GGCAAGGGAGGAATCGGGGGAATCGGTCGCGGGAGAAGCAGCTGCCGGGG
CTAGCGGAGGCCACGTGGCAAGGGAGGAATCGGGGGAATCGGTCGCGGGA
GAAGCAGCTGCCGGGGCTAGCG
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