mRNA_E-fasciculatus_F_contig1414.3034.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1414.3034.1
Unique NamemRNA_E-fasciculatus_F_contig1414.3034.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1414.3034.1 vs. uniprot
Match: D7FX27_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX27_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 3.250e-14
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 2 
Query:    2 WACLACQS*RTSGKRFKIFSDQTTGATTHLKDAHGIGGAASAKSTK 139
            WACLA Q+ R SGKR KIFS QT+GATTHLKD HGIGGA SA+STK
Sbjct: 1108 WACLASQACRASGKRLKIFSYQTSGATTHLKDTHGIGGATSAESTK 1153
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BLAST of mRNA_E-fasciculatus_F_contig1414.3034.1 vs. uniprot
Match: A0A6H5KX27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX27_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.500e-10
Identity = 32/46 (69.57%), Postives = 34/46 (73.91%), Query Frame = 2 
Query:    2 WACLACQS*RTSGKRFKIFSDQTTGATTHLKDAHGIGGAASAKSTK 139
            WACLA    R   KR KIFSD TTGAT+HLKD HGI GAASAK+ K
Sbjct:   57 WACLASVQCRNERKRLKIFSDATTGATSHLKDKHGIVGAASAKTAK 102
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BLAST of mRNA_E-fasciculatus_F_contig1414.3034.1 vs. uniprot
Match: A0A6H5L6Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z1_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.500e-10
Identity = 32/46 (69.57%), Postives = 34/46 (73.91%), Query Frame = 2 
Query:    2 WACLACQS*RTSGKRFKIFSDQTTGATTHLKDAHGIGGAASAKSTK 139
            WACLA    R   KR KIFSD TTGAT+HLKD HGI GAASAK+ K
Sbjct:  136 WACLASVQCRNERKRLKIFSDATTGATSHLKDKHGIVGAASAKTAK 181
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1414.3034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FX27_ECTSI3.250e-1478.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KX27_9PHAE1.500e-1069.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6Z1_9PHAE1.500e-1069.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1414contigE-fasciculatus_F_contig1414:1105..1245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-10_004030.1
Exons1
Model size141
Cds size141
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927905.6290176-CDS-E-fasciculatus_F_contig1414:1104..12451622927905.6290176-CDS-E-fasciculatus_F_contig1414:1104..1245Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1414 1105..1245 +
1695995746.2381563-CDS-E-fasciculatus_F_contig1414:1104..12451695995746.2381563-CDS-E-fasciculatus_F_contig1414:1104..1245Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1414 1105..1245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1414.3034.1prot_E-fasciculatus_F_contig1414.3034.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1414 1105..1245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1414.3034.1

>prot_E-fasciculatus_F_contig1414.3034.1 ID=prot_E-fasciculatus_F_contig1414.3034.1|Name=mRNA_E-fasciculatus_F_contig1414.3034.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=47bp
MGLPCLPVVTNEWQEIQDLLRPNDGSDDAPQRRTWDRGCSISQEHEE
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mRNA from alignment at E-fasciculatus_F_contig1414:1105..1245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1414.3034.1 ID=mRNA_E-fasciculatus_F_contig1414.3034.1|Name=mRNA_E-fasciculatus_F_contig1414.3034.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=141bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1414:1105..1245+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCTTGCCTTGCCTGCCAGTCGTGACGAACGAGTGGCAAGAGATTCA
AGATCTTCTCAGACCAAACGACGGGAGCGACGACGCACCTCAAAGACGCA
CATGGGATCGGGGGTGCAGCATCAGCCAAGAGCACGAAGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1414:1105..1245+

>mRNA_E-fasciculatus_F_contig1414.3034.1 ID=mRNA_E-fasciculatus_F_contig1414.3034.1|Name=mRNA_E-fasciculatus_F_contig1414.3034.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=282bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1414:1105..1245+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCTTGCCTTGCCTGCCAGTCGTGACGAACGAGTGGCAAGAGATTCA
AGATCTTCTCAGACCAAACGACGGGAGCGACGACGCACCTCAAAGACGCA
CATGGGATCGGGGGTGCAGCATCAGCCAAGAGCACGAAGAGATGGGCTTG
CCTTGCCTGCCAGTCGTGACGAACGAGTGGCAAGAGATTCAAGATCTTCT
CAGACCAAACGACGGGAGCGACGACGCACCTCAAAGACGCACATGGGATC
GGGGGTGCAGCATCAGCCAAGAGCACGAAGAG
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