mRNA_E-fasciculatus_F_contig14139.3032.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14139.3032.1
Unique NamemRNA_E-fasciculatus_F_contig14139.3032.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14139.3032.1 vs. uniprot
Match: A0A6H5KYH1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH1_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 5.640e-57
Identity = 164/236 (69.49%), Postives = 169/236 (71.61%), Query Frame = -2 
Query:    3 GGAACEVDVVIADPGFLAAEADGGAGNDSGGRLRRHASWAGTGAEAIAPSPSTVGVAGASVAAGDGSRRGGSTDGSGGGRH---RRSGSQQPAVGFLRALAALDPCVSALREARSAAKTGDRLGMALETLREHVKVTLIDLMDLETSIPGEAPDSDDEAGDGRRSAAGPAVELTAADASALDAKVAGLVSRLSGGXXXXXXXXXXXXXXXXXXXXXXXXXARGPPSLASVYKDGLR 701
            G A CEVDVVIADPGFLA EADG A NDSGGR RRHASW GTGAE IAPS STVG AGA+ A GDGSRRG               RS +QQPAVG LRALAALDPCVSALREARSAAKTGDRLGMALETLREHVK                                GPAVEL+AADAS+LDAKVAGLVSRLSGG    XXXXXXXXXXXXXXXXXXXX +RG PSLASVYKDGLR
Sbjct:  644 GRAGCEVDVVIADPGFLAGEADGRAANDSGGRSRRHASWTGTGAEVIAPSRSTVGAAGAAFAEGDGSRRGXXXXXXXXXXXXXXHRSRAQQPAVGPLRALAALDPCVSALREARSAAKTGDRLGMALETLREHVKGRAGG----RGGXXXXXXXXXXXXXXXXXXXXGPAVELSAADASSLDAKVAGLVSRLSGGGDADXXXXXXXXXXXXXXXXXXXX-SRGSPSLASVYKDGLR 874
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14139.3032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYH1_9PHAE5.640e-5769.49Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14139contigE-fasciculatus_F_contig14139:1084..1785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size704
Cds size702
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927905.5043015-CDS-E-fasciculatus_F_contig14139:1083..17851622927905.5043015-CDS-E-fasciculatus_F_contig14139:1083..1785Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14139 1084..1785 +
1695995746.2125378-CDS-E-fasciculatus_F_contig14139:1083..17851695995746.2125378-CDS-E-fasciculatus_F_contig14139:1083..1785Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14139 1084..1785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14139.3032.1prot_E-fasciculatus_F_contig14139.3032.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14139 1084..1785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14139.3032.1

>prot_E-fasciculatus_F_contig14139.3032.1 ID=prot_E-fasciculatus_F_contig14139.3032.1|Name=mRNA_E-fasciculatus_F_contig14139.3032.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=234bp
PRRPSLYTLASDGGPRAPPPPPPPPPPPLLKSSPSPSASPPPPPERRLTS
PATFASSALASAAVSSTAGPAALLRPSPASSSESGASPGMDVSRSIRSMR
VTFTCSRSVSRAMPSRSPVFAADLASRRALTHGSSAASARKNPTAGCCDP
ERRWRPPPLPSVLPPRLEPSPAATDAPATPTVLGEGAIASAPVPAHEACR
LNRPPESFPAPPSASAARKPGSAMTTSTSHAAPP
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mRNA from alignment at E-fasciculatus_F_contig14139:1084..1785+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14139.3032.1 ID=mRNA_E-fasciculatus_F_contig14139.3032.1|Name=mRNA_E-fasciculatus_F_contig14139.3032.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=702bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14139:1084..1785+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCCGCAGGCCGTCCTTGTACACGCTCGCCAGCGACGGCGGGCCTCGGGC
ACCACCACCACCACCACCACCACCACCACCACCGCTGCTGAAGTCGTCGC
CTTCGCCGTCAGCGTCGCCGCCGCCGCCGCCAGAAAGACGGCTCACCAGC
CCCGCCACCTTCGCGTCCAGCGCACTCGCGTCGGCCGCGGTCAGCTCCAC
GGCGGGACCCGCCGCGCTTCTCCGCCCGTCCCCGGCCTCGTCGTCGGAGT
CAGGGGCTTCTCCCGGGATGGACGTCTCGAGGTCCATCAGGTCGATGAGG
GTGACCTTCACGTGCTCCCGCAGCGTCTCGAGGGCCATGCCCAGCCGGTC
CCCCGTCTTCGCTGCCGACCTCGCCTCCCGGAGGGCGCTGACGCACGGGT
CCAGCGCCGCGAGCGCGCGCAAAAACCCGACGGCGGGCTGCTGTGACCCG
GAGCGGCGGTGGCGGCCGCCACCGCTGCCGTCCGTGCTTCCCCCGCGCCT
CGAACCGTCGCCTGCGGCAACCGACGCGCCCGCAACCCCGACGGTGCTAG
GAGAGGGTGCGATCGCCTCTGCTCCGGTCCCGGCCCACGAGGCGTGCCGC
CTCAATCGACCGCCGGAGTCGTTCCCGGCCCCGCCGTCCGCCTCCGCCGC
AAGGAAACCCGGGTCGGCGATGACGACGTCCACCTCGCACGCAGCTCCCC
CC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14139:1084..1785+

>mRNA_E-fasciculatus_F_contig14139.3032.1 ID=mRNA_E-fasciculatus_F_contig14139.3032.1|Name=mRNA_E-fasciculatus_F_contig14139.3032.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1404bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14139:1084..1785+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCCGCAGGCCGTCCTTGTACACGCTCGCCAGCGACGGCGGGCCTCGGGC
ACCACCACCACCACCACCACCACCACCACCACCGCTGCTGAAGTCGTCGC
CTTCGCCGTCAGCGTCGCCGCCGCCGCCGCCAGAAAGACGGCTCACCAGC
CCCGCCACCTTCGCGTCCAGCGCACTCGCGTCGGCCGCGGTCAGCTCCAC
GGCGGGACCCGCCGCGCTTCTCCGCCCGTCCCCGGCCTCGTCGTCGGAGT
CAGGGGCTTCTCCCGGGATGGACGTCTCGAGGTCCATCAGGTCGATGAGG
GTGACCTTCACGTGCTCCCGCAGCGTCTCGAGGGCCATGCCCAGCCGGTC
CCCCGTCTTCGCTGCCGACCTCGCCTCCCGGAGGGCGCTGACGCACGGGT
CCAGCGCCGCGAGCGCGCGCAAAAACCCGACGGCGGGCTGCTGTGACCCG
GAGCGGCGGTGGCGGCCGCCACCGCTGCCGTCCGTGCTTCCCCCGCGCCT
CGAACCGTCGCCTGCGGCAACCGACGCGCCCGCAACCCCGACGGTGCTAG
GAGAGGGTGCGATCGCCTCTGCTCCGGTCCCGGCCCACGAGGCGTGCCGC
CTCAATCGACCGCCGGAGTCGTTCCCGGCCCCGCCGTCCGCCTCCGCCGC
AAGGAAACCCGGGTCGGCGATGACGACGTCCACCTCGCACGCAGCTCCCC
CCCCCCGCAGGCCGTCCTTGTACACGCTCGCCAGCGACGGCGGGCCTCGG
GCACCACCACCACCACCACCACCACCACCACCACCGCTGCTGAAGTCGTC
GCCTTCGCCGTCAGCGTCGCCGCCGCCGCCGCCAGAAAGACGGCTCACCA
GCCCCGCCACCTTCGCGTCCAGCGCACTCGCGTCGGCCGCGGTCAGCTCC
ACGGCGGGACCCGCCGCGCTTCTCCGCCCGTCCCCGGCCTCGTCGTCGGA
GTCAGGGGCTTCTCCCGGGATGGACGTCTCGAGGTCCATCAGGTCGATGA
GGGTGACCTTCACGTGCTCCCGCAGCGTCTCGAGGGCCATGCCCAGCCGG
TCCCCCGTCTTCGCTGCCGACCTCGCCTCCCGGAGGGCGCTGACGCACGG
GTCCAGCGCCGCGAGCGCGCGCAAAAACCCGACGGCGGGCTGCTGTGACC
CGGAGCGGCGGTGGCGGCCGCCACCGCTGCCGTCCGTGCTTCCCCCGCGC
CTCGAACCGTCGCCTGCGGCAACCGACGCGCCCGCAACCCCGACGGTGCT
AGGAGAGGGTGCGATCGCCTCTGCTCCGGTCCCGGCCCACGAGGCGTGCC
GCCTCAATCGACCGCCGGAGTCGTTCCCGGCCCCGCCGTCCGCCTCCGCC
GCAAGGAAACCCGGGTCGGCGATGACGACGTCCACCTCGCACGCAGCTCC
CCCC
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