mRNA_E-fasciculatus_F_contig14138.3031.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14138.3031.1
Unique NamemRNA_E-fasciculatus_F_contig14138.3031.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14138.3031.1 vs. uniprot
Match: A0A6H5KKC7_9PHAE (TP6A_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKC7_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.760e-46
Identity = 168/244 (68.85%), Postives = 176/244 (72.13%), Query Frame = 1 
Query:   49 MAPPRGKKRKPAAEPEVLDVTDSQASKRSQAGKKRGSTPAAA--PASPPH-ASSARSGHARSYSSPAANKAAASAKAGGSXALSAGAWSAKDDGLDDFAFDMMSSDSDDADGPKSKRKSSPRGKKPSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGPKNAGKTPAXXXXXXXXXXXXKSTVPSADKQRKGXXXX---KARPQEVVDIDSEDNSGSGDGVNDXXXXXSDYEETLGSIAK 762
            MAPPRG KRK AAE EVLDVTDS A KRSQ G+KRGSTPAAA  PASP + +SSARSGH RSYSSPAANK AASAKAG  X           DGLDDFAFD+MSSDSDDA GP+SK KSSPRGKKPSGAXXXXXXXXXXXXXXXXX              VGPKNAGK P   XXXXXXXXXX             XXXX   KARPQEVV+IDSEDN GSGDGV D     SDYEE+LGS+AK
Sbjct:    1 MAPPRGSKRKQAAEAEVLDVTDSPAPKRSQGGRKRGSTPAAAAAPASPSNVSSSARSGHVRSYSSPAANKGAASAKAGXXXXXXXXXXXXXXDGLDDFAFDVMSSDSDDAGGPESKGKSSPRGKKPSGAXXXXXXXXXXXXXXXXXSSRKGKASAAG---VGPKNAGKAPVKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKARPQEVVNIDSEDNGGSGDGVEDDGDG-SDYEESLGSVAK 240
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14138.3031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKC7_9PHAE1.760e-4668.85TP6A_N domain-containing protein n=1 Tax=Ectocarpu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14138contigE-fasciculatus_F_contig14138:810..3363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionDNA topoisomerase VI subunit A
Ec32 orthologEc-24_003570.1
Hectar predicted targeting categoryother localisation
Exons3
Model size1120
Cds size1116
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14138.3031.1prot_E-fasciculatus_F_contig14138.3031.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14138 810..3361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927905.3871744-CDS-E-fasciculatus_F_contig14138:809..9291622927905.3871744-CDS-E-fasciculatus_F_contig14138:809..929Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14138 810..929 +
1695995746.1818423-CDS-E-fasciculatus_F_contig14138:809..9291695995746.1818423-CDS-E-fasciculatus_F_contig14138:809..929Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14138 810..929 +
1622927905.4051332-CDS-E-fasciculatus_F_contig14138:2213..25461622927905.4051332-CDS-E-fasciculatus_F_contig14138:2213..2546Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14138 2214..2546 +
1695995746.1926608-CDS-E-fasciculatus_F_contig14138:2213..25461695995746.1926608-CDS-E-fasciculatus_F_contig14138:2213..2546Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14138 2214..2546 +
1622927905.423406-CDS-E-fasciculatus_F_contig14138:2698..33611622927905.423406-CDS-E-fasciculatus_F_contig14138:2698..3361Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14138 2699..3361 +
1695995746.2026281-CDS-E-fasciculatus_F_contig14138:2698..33611695995746.2026281-CDS-E-fasciculatus_F_contig14138:2698..3361Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14138 2699..3361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14138.3031.1

>prot_E-fasciculatus_F_contig14138.3031.1 ID=prot_E-fasciculatus_F_contig14138.3031.1|Name=mRNA_E-fasciculatus_F_contig14138.3031.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=372bp
CTRKQQARGASDAATRMAPPRGKKRKPAAEPEVLDVTDSQASKRSQAGKK
RGSTPAAAPASPPHASSARSGHARSYSSPAANKAAASAKAGGSPALSAGA
WSAKDDGLDDFAFDMMSSDSDDADGPKSKRKSSPRGKKPSGAAGGGGGGT
QKNKAAAAATPSSRKGKASAGGGVGPKNAGKTPAKKRAAAAAAAAPKSTV
PSADKQRKGAAAAKARPQEVVDIDSEDNSGSGDGVNDDDDDGSDYEETLG
SIAKKKSGGGKGKSHSDSAKGGGGGGGGGGSTKGKGPKKPTATAAAAAAA
PASGRKKRASSRPPPSYGGDSNTGSEDESLGGDDSETAAATTTTPSTSSK
PKKKSSAVGAAAAAEEEEDGKQ
back to top

mRNA from alignment at E-fasciculatus_F_contig14138:810..3363+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14138.3031.1 ID=mRNA_E-fasciculatus_F_contig14138.3031.1|Name=mRNA_E-fasciculatus_F_contig14138.3031.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2554bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14138:810..3363+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGCACCCGCAAGCAGCAAGCAAGAGGGGCTAGCGACGCGGCGACGAGGAT
GGCGCCACCCCGTGGGAAGAAAAGGAAGCCAGCCGCCGAACCGGAGGTTT
TGGACGTAACGGATTCGCAGGTACAAAACAGCTGTGCGAGTCGGACAGAC
ATATCCAGGTCAAGAAATCAAATTTTCAAACGCTTGACGGAGGGGGGGAA
AGAGAGGAGAGCTGCCTGGCCAGCGGTCCTGCTCTTGTGTGTCTATGGGA
CGGGACAATCAGGATTCGACCTTGCTGTTAAAGGCTATTGCGCATGGGCT
GAATGTTGCTACCGTGCGCGCACTCTATCAAACTCGAAACAAGGAGCAGG
TGACTTATTGTCCGAACCCGTTGTACGTCTAAAAACCAACCGGCAACCTA
ACGGGGTTGTCGTGCAGTTCAAATATGACATACATCGGGTTGATGAATCA
CGCGGTCAGTCAGCCTCTCACCAAACACGAGAGCATTAGGACACGACGAA
TTAATTCATGTGCTCGAGTTTGCGGCACACTGCTGTACGGTTGGGGACTG
CTGTGAAACGTCAACAGCAGCAGTGTAGTGCACACGCTGTGTCGGATGTC
GGATGATTTTGAAATTTGTTGGTGTTCGGCGGCCGAGCACCGAGCACTGG
GTACATGCACAGGCTGCTCACTCAGGTTTCCCATTTCTTGTGGGTTGTTC
ACACACAACACCAACAAGGACTACATACGGCATTCATTTATTCATGCCCG
CTTTAAGGACCCTTCCGGCTTTCGGCCTTTTGAAAAGTGTCGACACAAGT
TTGGGACCATAAATCATCGTCCCCACGTCAAGGGAAGCGACTGTCTGTAA
CAGAAGTAGCTGTGCTGAGGTGATGGTCCGACCCGCAGCAGCAGTCGCCC
GATATACGATAGGGTTCAACACCTACCACAGGAAAGACCCAGCATGGCGG
TCTTTTTCCGGTCGTATCTATCGTGGGCATCGTGTCATGTGCTAACGGAC
GGGTTTGCGTGGCCTTGTCTTGAGGGCTACGTTTATGTGGCGCCCATTTC
CAGATGAGAACCGAAACATTTTCGTTTTCACGGTACCGCGGAGGTCCCTG
TTTTCGGCCGCTTATTTAAGGCCGGTTGCCCTATTTGATGCCGATGCAAT
CGCTTGGCACAGATGGGATACTCAAGTTGCCTCATACCCTGAATAGTGCC
TGGTGCCCGACATACGCCCGGTAACAAAGCCGGGTAACATCCCTTGGACC
ATTTAAACAGGGACCTCTACCGTAGCTGTCCACATTTGAGTGGGGCCCAT
TTCCAGCTGAGGAACCGAACACACATTCATTTTCACTGCTGTAGCGGTCC
GCACCTGCCTCGCGCGTGCCGCTGCTGCGCCTAAACGAACCTCCTTCTTT
GCAGGCGTCGAAGCGTTCGCAGGCCGGCAAGAAGCGTGGCAGCACTCCAG
CAGCAGCGCCGGCATCACCGCCCCATGCATCATCTGCTCGCAGCGGACAC
GCCCGCTCCTACTCGTCTCCGGCGGCGAATAAGGCGGCTGCTTCGGCCAA
GGCGGGGGGTTCCCCCGCGCTGTCCGCCGGGGCATGGAGCGCCAAGGATG
ACGGTCTCGACGACTTCGCTTTCGACATGATGAGCAGCGACTCAGACGAC
GCCGATGGCCCGAAGTCGAAGCGGAAGTCGTCTCCGAGGGGGAAGAAGCC
CTCGGGTGCGGCAGGAGGCGGCGGCGGCGGCACTCAGGTGTGTGGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGC
TGTTATTGTTGTTGTTTTTGCCTGTTGTTGTTGTTGTTATTGCTTTTGTT
GCTGGTAAAGGCACTGACGGCACGCCCTCCGCTCCGCAGAAAAACAAGGC
GGCAGCAGCGGCGACCCCGTCGAGCCGCAAAGGTAAGGCTTCCGCCGGCG
GCGGCGTCGGTCCCAAGAACGCCGGCAAGACACCTGCAAAGAAGAGGGCG
GCTGCTGCTGCTGCCGCTGCTCCCAAGTCCACCGTTCCCTCGGCCGACAA
GCAGCGAAAGGGCGCCGCTGCTGCGAAGGCTAGGCCGCAGGAAGTGGTCG
ACATCGACAGCGAGGACAACAGTGGCAGTGGGGATGGTGTTAACGACGAC
GACGACGACGGGTCTGACTACGAGGAGACCCTCGGAAGCATCGCCAAGAA
AAAGAGCGGGGGCGGAAAGGGCAAAAGCCACAGCGATAGCGCGAAAGGTG
GCGGCGGCGGCGGCGGCGGCGGCGGCAGCACAAAGGGGAAAGGGCCGAAG
AAACCTACTGCTACCGCTGCCGCTGCTGCCGCTGCACCGGCTTCGGGTCG
CAAGAAGCGCGCTAGCTCACGCCCCCCGCCTTCGTACGGCGGGGACAGCA
ACACCGGTAGCGAAGACGAGAGCTTGGGCGGCGACGATTCCGAAACAGCA
GCAGCAACAACAACAACGCCGTCTACGTCATCGAAACCCAAGAAAAAGTC
CTCCGCAGTGGGGGCGGCGGCGGCGGCGGAGGAGGAAGAAGACGGCAAGC
AGCC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14138:810..3363+

>mRNA_E-fasciculatus_F_contig14138.3031.1 ID=mRNA_E-fasciculatus_F_contig14138.3031.1|Name=mRNA_E-fasciculatus_F_contig14138.3031.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2232bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14138:810..3363+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGCACCCGCAAGCAGCAAGCAAGAGGGGCTAGCGACGCGGCGACGAGGAT
GGCGCCACCCCGTGGGAAGAAAAGGAAGCCAGCCGCCGAACCGGAGGTTT
TGGACGTAACGGATTCGCAGTGCACCCGCAAGCAGCAAGCAAGAGGGGCT
AGCGACGCGGCGACGAGGATGGCGCCACCCCGTGGGAAGAAAAGGAAGCC
AGCCGCCGAACCGGAGGTTTTGGACGTAACGGATTCGCAGGCGTCGAAGC
GTTCGCAGGCCGGCAAGAAGCGTGGCAGCACTCCAGCAGCAGCGCCGGCA
TCACCGCCCCATGCATCATCTGCTCGCAGCGGACACGCCCGCTCCTACTC
GTCTCCGGCGGCGAATAAGGCGGCTGCTTCGGCCAAGGCGGGGGGTTCCC
CCGCGCTGTCCGCCGGGGCATGGAGCGCCAAGGATGACGGTCTCGACGAC
TTCGCTTTCGACATGATGAGCAGCGACTCAGACGACGCCGATGGCCCGAA
GTCGAAGCGGAAGTCGTCTCCGAGGGGGAAGAAGCCCTCGGGTGCGGCAG
GAGGCGGCGGCGGCGGCACTCAGGCGTCGAAGCGTTCGCAGGCCGGCAAG
AAGCGTGGCAGCACTCCAGCAGCAGCGCCGGCATCACCGCCCCATGCATC
ATCTGCTCGCAGCGGACACGCCCGCTCCTACTCGTCTCCGGCGGCGAATA
AGGCGGCTGCTTCGGCCAAGGCGGGGGGTTCCCCCGCGCTGTCCGCCGGG
GCATGGAGCGCCAAGGATGACGGTCTCGACGACTTCGCTTTCGACATGAT
GAGCAGCGACTCAGACGACGCCGATGGCCCGAAGTCGAAGCGGAAGTCGT
CTCCGAGGGGGAAGAAGCCCTCGGGTGCGGCAGGAGGCGGCGGCGGCGGC
ACTCAGAAAAACAAGGCGGCAGCAGCGGCGACCCCGTCGAGCCGCAAAGG
TAAGGCTTCCGCCGGCGGCGGCGTCGGTCCCAAGAACGCCGGCAAGACAC
CTGCAAAGAAGAGGGCGGCTGCTGCTGCTGCCGCTGCTCCCAAGTCCACC
GTTCCCTCGGCCGACAAGCAGCGAAAGGGCGCCGCTGCTGCGAAGGCTAG
GCCGCAGGAAGTGGTCGACATCGACAGCGAGGACAACAGTGGCAGTGGGG
ATGGTGTTAACGACGACGACGACGACGGGTCTGACTACGAGGAGACCCTC
GGAAGCATCGCCAAGAAAAAGAGCGGGGGCGGAAAGGGCAAAAGCCACAG
CGATAGCGCGAAAGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCACAA
AGGGGAAAGGGCCGAAGAAACCTACTGCTACCGCTGCCGCTGCTGCCGCT
GCACCGGCTTCGGGTCGCAAGAAGCGCGCTAGCTCACGCCCCCCGCCTTC
GTACGGCGGGGACAGCAACACCGGTAGCGAAGACGAGAGCTTGGGCGGCG
ACGATTCCGAAACAGCAGCAGCAACAACAACAACGCCGTCTACGTCATCG
AAACCCAAGAAAAAGTCCTCCGCAGTGGGGGCGGCGGCGGCGGCGGAGGA
GGAAGAAGACGGCAAGCAGAAAAACAAGGCGGCAGCAGCGGCGACCCCGT
CGAGCCGCAAAGGTAAGGCTTCCGCCGGCGGCGGCGTCGGTCCCAAGAAC
GCCGGCAAGACACCTGCAAAGAAGAGGGCGGCTGCTGCTGCTGCCGCTGC
TCCCAAGTCCACCGTTCCCTCGGCCGACAAGCAGCGAAAGGGCGCCGCTG
CTGCGAAGGCTAGGCCGCAGGAAGTGGTCGACATCGACAGCGAGGACAAC
AGTGGCAGTGGGGATGGTGTTAACGACGACGACGACGACGGGTCTGACTA
CGAGGAGACCCTCGGAAGCATCGCCAAGAAAAAGAGCGGGGGCGGAAAGG
GCAAAAGCCACAGCGATAGCGCGAAAGGTGGCGGCGGCGGCGGCGGCGGC
GGCGGCAGCACAAAGGGGAAAGGGCCGAAGAAACCTACTGCTACCGCTGC
CGCTGCTGCCGCTGCACCGGCTTCGGGTCGCAAGAAGCGCGCTAGCTCAC
GCCCCCCGCCTTCGTACGGCGGGGACAGCAACACCGGTAGCGAAGACGAG
AGCTTGGGCGGCGACGATTCCGAAACAGCAGCAGCAACAACAACAACGCC
GTCTACGTCATCGAAACCCAAGAAAAAGTCCTCCGCAGTGGGGGCGGCGG
CGGCGGCGGAGGAGGAAGAAGACGGCAAGCAG
back to top