mRNA_E-fasciculatus_F_contig14136.3029.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14136.3029.1
Unique NamemRNA_E-fasciculatus_F_contig14136.3029.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14136.3029.1 vs. uniprot
Match: A0A6H5L6S0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S0_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 9.970e-38
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 LTFVVIIPCWEDSAGWKRLRDSAFLSRHIKLDQKDHGYCEGKQHLRRNRYRLASFHTSVFFLQTEAA 201
            LTFVVIIPCWEDSAGWKRLRDSAFLS+HIKL QKDHGYCEGKQHLRRNRYRLASFHTSVFFLQTE A
Sbjct:    9 LTFVVIIPCWEDSAGWKRLRDSAFLSKHIKLHQKDHGYCEGKQHLRRNRYRLASFHTSVFFLQTEPA 75
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BLAST of mRNA_E-fasciculatus_F_contig14136.3029.1 vs. uniprot
Match: D7FYX1_ECTSI (PCIF1_WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX1_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 5.600e-37
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 LTFVVIIPCWEDSAGWKRLRDSAFLSRHIKLDQKDHGYCEGKQHLRRNRYRLASFHTSVFFLQTEAA 201
            LTFVVIIPCWEDSAGWKRLRDSAFLS+HIKLDQKDHGYCEGKQHLRRNRYRLASFHTSVFFLQT+ A
Sbjct:  375 LTFVVIIPCWEDSAGWKRLRDSAFLSKHIKLDQKDHGYCEGKQHLRRNRYRLASFHTSVFFLQTDVA 441
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BLAST of mRNA_E-fasciculatus_F_contig14136.3029.1 vs. uniprot
Match: A0A7S2WHN4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WHN4_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.930e-20
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    1 LTFVVIIPCWEDSAGWKRLRDSAFLSRHIKLDQKDHGYCEGKQHLRRNRYRLASFHTSVFFLQTEA 198
            L+FVVIIP W  + GW +L +SAFL     + Q DHGYCEGKQ LRRNRYR+ASF TSVFFLQ +A
Sbjct:  304 LSFVVIIPAWRHTTGWNKLAESAFLRHEELIAQADHGYCEGKQVLRRNRYRIASFDTSVFFLQNKA 369
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BLAST of mRNA_E-fasciculatus_F_contig14136.3029.1 vs. uniprot
Match: A0A7S2AZY4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZY4_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 7.540e-19
Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:    1 LTFVVIIPCWEDSAGWKRLRDSAFLSRHIKLDQKDHGYCEGKQHLRRNRYRLASFHTSVFFLQTEA 198
            L+FVVI+P W D+ G   L+ S  L R+  L Q+DHGYCEGKQ LRR RYR+ASF TS+FFLQ  A
Sbjct:   12 LSFVVIVPAWNDTRGHAALQASTQLRRYELLAQEDHGYCEGKQSLRRTRYRIASFDTSIFFLQNLA 77
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BLAST of mRNA_E-fasciculatus_F_contig14136.3029.1 vs. uniprot
Match: D0NY28_PHYIT (PCIF1_WW domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NY28_PHYIT)

HSP 1 Score: 87.0 bits (214), Expect = 8.780e-19
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    1 LTFVVIIPCWEDSAGWKRLRDSAFLSRHIKLDQKDHGYCEGKQHLRRNRYRLASFHTSVFFLQTEAA 201
            L F+VIIP W+++ GW++L  S F  RH+ + QK HGYCEGKQ +R+ R+R+ASF TSVFF Q   A
Sbjct:  235 LAFIVIIPAWQETEGWQQLNASRFNQRHLLIPQKQHGYCEGKQQIRKTRWRIASFDTSVFFWQNSKA 301
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14136.3029.1 vs. uniprot
Match: A0A0P1A8A2_PLAHL (Phosphorylated CTD interacting factor 1, WW domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A8A2_PLAHL)

HSP 1 Score: 87.8 bits (216), Expect = 9.350e-19
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:    1 LTFVVIIPCWEDSAGWKRLRDSAFLSRHIKLDQKDHGYCEGKQHLRRNRYRLASFHTSVFFLQTEAA 201
            LTF+VIIP W+ + GW++L  S +  RH+ + QK HG+CEGKQ LR+ R+R+ASF TS+FFLQ   A
Sbjct:  354 LTFIVIIPSWQKTEGWQQLNASRYNQRHVLIPQKQHGFCEGKQQLRKTRWRIASFDTSIFFLQNSKA 420
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14136.3029.1 vs. uniprot
Match: G4YF15_PHYSP (PCIF1_WW domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=G4YF15_PHYSP)

HSP 1 Score: 85.9 bits (211), Expect = 3.110e-18
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 LTFVVIIPCWEDSAGWKRLRDSAFLSRHIKLDQKDHGYCEGKQHLRRNRYRLASFHTSVFFLQTEAA 201
            L F+VIIP W+D+ GW++L  S +   H+ + QK HGYCEGKQ +R+ R+R+ASF TSVFF Q   A
Sbjct:  270 LAFIVIIPAWQDTEGWQQLNSSRYNQTHLLIPQKQHGYCEGKQQIRKTRWRIASFDTSVFFWQNSKA 336
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BLAST of mRNA_E-fasciculatus_F_contig14136.3029.1 vs. uniprot
Match: A0A329T4D0_9STRA (PCIF1_WW domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T4D0_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 6.340e-18
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    1 LTFVVIIPCWEDSAGWKRLRDSAFLSRHIKLDQKDHGYCEGKQHLRRNRYRLASFHTSVFFLQTEAA 201
            L F+VIIP W+++ GW++L  S F  RH+ + QK HGYCEGKQ +R+ R+R+ASF TS+FF Q   A
Sbjct:  367 LAFIVIIPAWQETEGWQQLNASRFNQRHLLVPQKQHGYCEGKQQIRKTRWRIASFDTSLFFWQNSKA 433
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14136.3029.1 vs. uniprot
Match: A0A3M6VL48_9STRA (PCIF1_WW domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VL48_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.140e-17
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 LTFVVIIPCWEDSAGWKRLRDSAFLSRHIKLDQKDHGYCEGKQHLRRNRYRLASFHTSVFFLQTEAA 201
            L F++IIP W+ + GW++L  S F  RH+ + QK HGYCEGKQ +R+ R+R+ASF TSVFF Q   A
Sbjct:  347 LAFIIIIPTWQKTEGWQQLNASRFNQRHLLIPQKQHGYCEGKQQIRKTRWRIASFDTSVFFWQNAMA 413
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14136.3029.1 vs. uniprot
Match: A0A6A3R028_9STRA (PCIF1_WW domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3R028_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.200e-17
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 LTFVVIIPCWEDSAGWKRLRDSAFLSRHIKLDQKDHGYCEGKQHLRRNRYRLASFHTSVFFLQTEAA 201
            L F+VIIP W+D+ GW++L  S +   H+ + QK HGYCEGKQ +R+ R+R+ASF TSVFF Q   A
Sbjct:  358 LAFIVIIPAWQDTEGWQQLNASRYNQTHLLVPQKQHGYCEGKQQIRKTRWRIASFDTSVFFWQNSKA 424
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14136.3029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6S0_9PHAE9.970e-3895.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYX1_ECTSI5.600e-3795.52PCIF1_WW domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2WHN4_9STRA1.930e-2065.15Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2AZY4_9STRA7.540e-1960.61Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
D0NY28_PHYIT8.780e-1955.22PCIF1_WW domain-containing protein n=1 Tax=Phytoph... [more]
A0A0P1A8A2_PLAHL9.350e-1955.22Phosphorylated CTD interacting factor 1, WW domain... [more]
G4YF15_PHYSP3.110e-1853.73PCIF1_WW domain-containing protein n=11 Tax=Phytop... [more]
A0A329T4D0_9STRA6.340e-1853.73PCIF1_WW domain-containing protein n=1 Tax=Phytoph... [more]
A0A3M6VL48_9STRA1.140e-1753.73PCIF1_WW domain-containing protein n=1 Tax=Peronos... [more]
A0A6A3R028_9STRA1.200e-1753.73PCIF1_WW domain-containing protein n=4 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14136contigE-fasciculatus_F_contig14136:258..1217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue2.1e-31
Seed eggNOG ortholog2880.D7FYX1
Preferred namePCIF1
KEGG koko:K17584
GOsGO:0003002,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005856,GO:0007275,GO:0007389,GO:0007444,GO:0007447,GO:0007450,GO:0008150,GO:0009888,GO:0009892,GO:0009953,GO:0010563,GO:0010921,GO:0010923,GO:0015630,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0035220,GO:0035222,GO:0035295,GO:0035303,GO:0035305,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044092,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045171,GO:0045936,GO:0048190,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051336,GO:0051346,GO:0060429,GO:0065007,GO:0065009,GO:0070013
EggNOG free text desc.negative regulation of phosphatase activity
EggNOG OGs28P6D@1,2QVT7@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPhosphorylated CTD interacting factor 1, WW domain
Ec32 orthologEc-19_002790.1
Exons2
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927905.1914191-CDS-E-fasciculatus_F_contig14136:257..3551622927905.1914191-CDS-E-fasciculatus_F_contig14136:257..355Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14136 258..355 -
1695995746.1129491-CDS-E-fasciculatus_F_contig14136:257..3551695995746.1129491-CDS-E-fasciculatus_F_contig14136:257..355Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14136 258..355 -
1622927905.2356393-CDS-E-fasciculatus_F_contig14136:1114..12171622927905.2356393-CDS-E-fasciculatus_F_contig14136:1114..1217Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14136 1115..1217 -
1695995746.126379-CDS-E-fasciculatus_F_contig14136:1114..12171695995746.126379-CDS-E-fasciculatus_F_contig14136:1114..1217Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14136 1115..1217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14136.3029.1prot_E-fasciculatus_F_contig14136.3029.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14136 258..1217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14136.3029.1

>prot_E-fasciculatus_F_contig14136.3029.1 ID=prot_E-fasciculatus_F_contig14136.3029.1|Name=mRNA_E-fasciculatus_F_contig14136.3029.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=67bp
LTFVVIIPCWEDSAGWKRLRDSAFLSRHIKLDQKDHGYCEGKQHLRRNRY
RLASFHTSVFFLQTEAA
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mRNA from alignment at E-fasciculatus_F_contig14136:258..1217-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14136.3029.1 ID=mRNA_E-fasciculatus_F_contig14136.3029.1|Name=mRNA_E-fasciculatus_F_contig14136.3029.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=960bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14136:258..1217- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTAACCTTCGTGGTGATAATACCTTGCTGGGAAGACTCCGCGGGGTGGAA
GAGACTGCGGGACAGCGCGTTTCTGTCCAGGCACATCAAGCTCGACCAGA
AAGGTGAGAGAAGACGACGGTTCGTTGGCGTCTTTCCTCGGCGGTATTGA
TTGCCCGTTCACAGGCGGGAGGATGTGGCTCGGAAACCGAACGGGTGTCC
TCTGTTGCATGGTAGCGCGAAGCACGGAAATTGATACATGGCTTCCACGC
GGAACAAGCGCTCGCACGACCGAGCGACCTGGAAACCTGTGACATTCCCG
CTTTTGTTGAGACGGGGAGGGGAGGGGGGTGGCGGTAGACTACGTGCAGT
GCGCGTTTCTTGGCCGGAAAATGCCGTCAATTCGGCGGATAGTCAGCTAC
ACCGTGGAGTGCTACAGCAACCCCGCCAAATAAACTCCTTGATGGGGGGG
GTTGTGGAAGCAAAGGTTGGCATGCCCGTGAGTGCTTTGGTTTTACGGCA
TACTATGGCGAGGTGAGGGCTGACTGAGACCTCTATTTTGCTCACTCGAT
TGTTATTTGTAAGTGTGCGGGAGGGCAGACAGCAGTAGTTCGAGCTCGCG
CGCTGCGTACGAGACGGGGGAGAACACAAGCTATCGATGGCCACTAAGTA
GCTGAATCGCTGCCCAAGTCAATTTTATTGCTTTGTTCGTCCCGCTCGGC
ACTCGGCATCTTGTCATTCCATAGCCTGGGTAATGACAACCGCCTAGATT
TCGTCACCAAGCCAATGTTAGAGCCAACATTATAAACACAATAACACGGC
TCGCGGGTGCGTGCGTGCGTGCGCCGCCTCCCCTCCGCCTCTCGTTCCCG
TTCCCGGCGCAGACCACGGTTACTGCGAGGGCAAGCAGCACCTGCGGCGC
AACCGCTACCGGTTGGCGTCGTTCCACACGAGCGTCTTCTTCCTGCAGAC
CGAGGCGGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14136:258..1217-

>mRNA_E-fasciculatus_F_contig14136.3029.1 ID=mRNA_E-fasciculatus_F_contig14136.3029.1|Name=mRNA_E-fasciculatus_F_contig14136.3029.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=402bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14136:258..1217- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTAACCTTCGTGGTGATAATACCTTGCTGGGAAGACTCCGCGGGGTGGAA
GAGACTGCGGGACAGCGCGTTTCTGTCCAGGCACATCAAGCTCGACCAGA
AAGTTAACCTTCGTGGTGATAATACCTTGCTGGGAAGACTCCGCGGGGTG
GAAGAGACTGCGGGACAGCGCGTTTCTGTCCAGGCACATCAAGCTCGACC
AGAAAGACCACGGTTACTGCGAGGGCAAGCAGCACCTGCGGCGCAACCGC
TACCGGTTGGCGTCGTTCCACACGAGCGTCTTCTTCCTGCAGACCGAGGC
GGCGACCACGGTTACTGCGAGGGCAAGCAGCACCTGCGGCGCAACCGCTA
CCGGTTGGCGTCGTTCCACACGAGCGTCTTCTTCCTGCAGACCGAGGCGG
CG
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