mRNA_E-fasciculatus_F_contig1413.3026.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1413.3026.1
Unique NamemRNA_E-fasciculatus_F_contig1413.3026.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1413.3026.1 vs. uniprot
Match: D7G9C0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9C0_ECTSI)

HSP 1 Score: 418 bits (1074), Expect = 2.420e-139
Identity = 218/298 (73.15%), Postives = 232/298 (77.85%), Query Frame = 1
Query:  163 MGRTAAVVAGAALVGLLDVASAAGEDFRVVTPSEGMTVISSRTYTVEWTNNFANSFVEIDLYYCGSNCEEDECGQWITSLCPFGKDGCPDNEGDYDVVMPEPMAGTSGGTYKVGVTDADDPTNQSCSGGFTLTALEDIVVDSDADFVQGLTVTSPEAGDLAYAGEEYTVLFDYFSEVGSRVGRFNIELYEDNGLGGCNGDFVTTLCDKPDIGCKDSQGDYDIVMADVPTGEYKIRISRFEDTATYGCSGVFFVVSDDGGSEDXXMDSDDDTALSFDFGDLTDDIQDSSLDTADDIEWD 1056
            M RTA VVAGAALVGLLDVAS AGE+F+V+ PSEGMTVISSRTYTVEWTNN  NSFVEIDL YCGS+C+E ECGQWITSLCP+G+DGC D EGDYDVVMPEPMAGTSGG YK                                    GLT  SPE GDLAY G+EYTV FDYFSEV SRVGRFNIELYEDNGLGGCNG+FV+TLCDKPDIGCKDSQGDYDI+MADVPTGE KI ISRFEDTATYGCSG+FFVVSDDG SEDXX       A SFDF DLTDDIQDS LDTADD+E+D
Sbjct:    1 MVRTAGVVAGAALVGLLDVASVAGEEFQVIAPSEGMTVISSRTYTVEWTNNVPNSFVEIDLCYCGSSCKEGECGQWITSLCPYGEDGCHDIEGDYDVVMPEPMAGTSGGAYK------------------------------------GLTFISPETGDLAYVGQEYTVQFDYFSEVDSRVGRFNIELYEDNGLGGCNGEFVSTLCDKPDIGCKDSQGDYDIIMADVPTGECKIHISRFEDTATYGCSGIFFVVSDDGDSEDXXXXXXXXIAFSFDFSDLTDDIQDSFLDTADDVEFD 262          
BLAST of mRNA_E-fasciculatus_F_contig1413.3026.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 268 bits (686), Expect = 1.040e-81
Identity = 137/245 (55.92%), Postives = 164/245 (66.94%), Query Frame = 1
Query:  229 AGEDFRVVTPSEGMTVISSRTYTVEWTNNFANSFVEIDLYYCGSNCEEDECGQWITSLCPFGKDGCPDNEGDYDVVMPEPMAGTSGGTYKVGVTDADDPTNQSCSGGFTLTALEDIVVDSDADFVQGLTVTSPEAGDLAYAGEEYTVLFDYFSEVGSRVGRFNIELYEDNGLGGCNGDFVTTLCDKPDIGCKDSQGDYDI-VMADVPTGEYKIRISRFEDTATYGCSGVFFVVSDDGGSEDXXMD 960
            A     VVTP+EG  V++SR YTVEWT   +N+  EIDLYYCGS C EDECG W+T+LCP+G+DGCPDNEGDYD+VMPEPM+GTSG  YKV V D DD  +  CS  F L A  +     DA     +TVTSP +GD A AGEEYTV FDY + +GS VGRF I+LY   G G C G F+ TLCDKP IGCKDS GDYD+ +  D   G Y IR+  FED + YGCS  F ++  D   +D  +D
Sbjct:    4 AASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPY-VTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDC-GTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDSPDDGDLD 246          
BLAST of mRNA_E-fasciculatus_F_contig1413.3026.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 2.180e-81
Identity = 139/258 (53.88%), Postives = 171/258 (66.28%), Query Frame = 1
Query:  163 MGRTAAVVAGAALVGLLDVASAAGEDFRVVTPSEGMTVISSRTYTVEWTNNFANSFVEIDLYYCGSNCEEDECGQWITSLCPFGKDGCPDNEGDYDVVMPEPMAGTSGGTYKVGVTDADDPTNQSCSGGFTLTALEDIVVDSDADFVQGLTVTSPEAGDLAYAGEEYTVLFDYFSEVGSRVGRFNIELYEDNGLGGCNGDFVTTLCDKPDIGCKDSQGDYDI-VMADVPTGEYKIRISRFEDTATYGCSGVFFVVSDD 933
            M RT  V    A++G       A     VVTPS  + V++ RTYTVEWT   +  F EIDLY+CGS C ED CG W+T+LCP+G++GCPDNEGDYD+VMPEPM+G S   YKV V D  D  +  CS  F L A ED   D+ ++    LTVTSP  GD A AGEEYTV FDY + VGS+V RF+I+LY  +G G C G +VT++CDKP IGCKDS GDYD+ + AD   G+YKIR+ RFED   YGCSG F ++  D
Sbjct:    1 MARTGFVALACAMLG-------AANALEVVTPSADLIVVADRTYTVEWTGADSGRF-EIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASED-APDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDC-GTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGD 248          
BLAST of mRNA_E-fasciculatus_F_contig1413.3026.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 267 bits (682), Expect = 2.330e-81
Identity = 141/247 (57.09%), Postives = 165/247 (66.80%), Query Frame = 1
Query:  205 GLLDVASAAGEDFRVVTPSEGMTVISSRTYTVEWTNNFANSFVEIDLYYCGSNCEEDECGQWITSLCPFGKDGCPDNEGDYDVVMPEPMAGTSGGTYKVGVTDADDPTNQSCSGGFTLTALEDIVVDSDADFVQGLTVTSPEAGDLAYAGEEYTVLFDYFSEVGSRVGRFNIELYEDNGLGGCNGDFVTTLCDKPDIGCKDSQGDYDI-VMADVPTGEYKIRISRFEDTATYGCSGVFFVVSDDGGS 942
            G+L VASA      VVTP+ G  V+SSR YTVEW+   +N   EIDLYYC S C EDECG+W+T+LCP+G+DGCPDNEGDYD+VMPEPM+GTSG  YKV V D DD  +  CS  F L A  D    SDA     +TVTSP  GD A AGEEYTV FDY + +GS VGRF I+LY   G G C G F+ TLCDKP IGCKDS GDYD+ +  D   G Y IR+  FED + YGCS  F ++  D  S
Sbjct:   13 GMLGVASA----LEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPY-VTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDC-GTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADDSS 253          
BLAST of mRNA_E-fasciculatus_F_contig1413.3026.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 262 bits (669), Expect = 2.620e-79
Identity = 142/264 (53.79%), Postives = 177/264 (67.05%), Query Frame = 1
Query:  205 GLLDVASAAGEDFRVVTPSEGMTVISSRTYTVEWTNNFANSFVEIDLYYCGSNCEEDECGQWITSLCPFGKDGCPDNEGDYDVVMPEPMAGTSGGTYKVGVTDADDPTNQSCSGGFTLTALEDIVVDSDADFVQGLTVTSPEAGDLAYAGEEYTVLFDYFSEVGSRVGRFNIELYEDNGLGGCNGDFVTTLCDKPDIGCKDSQGDYDI-VMADVPTGEYKIRISRFEDTATYGCSGVFFVVSDDGGSEDXXMDSDDDTALSFDF 993
            G+L  A+A     +V TPS+G+TVI+ RTYTVEWT   +++  EIDLYYCGS C ED+CG W+T+LCP+G+DGCPDNEGDYD+VMPEPM GTSG  YKV V D  D  +  CS  F L A  +     D D    L VTSP +GDLA    EYTV FDY + VGS V RF I+LY  +G G C G +V ++CDKP IGCKDS GDYD+ +  D   GEYKIR++RFED + Y CSG F +  ++G   DXX   +D  +LS+ F
Sbjct:   12 GMLGAANA----LKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPT-LEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDC-GTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI--EEGDDSDXXXXXEDAFSLSYRF 267          
BLAST of mRNA_E-fasciculatus_F_contig1413.3026.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 4.900e-74
Identity = 131/244 (53.69%), Postives = 163/244 (66.80%), Query Frame = 1
Query:  205 GLLDVASAAGEDFRVVTPSEGMTVISSRTYTVEWTNNFANSFVEIDLYYCGSNCEEDECGQWITSLCPFGKDGCPDNEGDYDVVMPEPMAGTSGGTYKVGVTDADDPTNQSCSGGFTLTALEDIVVDSDADFVQGLTVTSPEAGDLAYAGEEYTVLFDYFSEVGSRVGRFNIELYE-DNGLGGCNGDFVTTLCDKPDIGCKDSQGDYDI-VMADVPTGEYKIRISRFEDTATYGCSGVFFVVSD 930
            G+L  A+A      VV+P+ G++VI+ RTYTVEWT    + F EIDLYYCGS C EDECG W+T+LCP+G DGCPD +GDYD+VMPEPMAGTS G YKV VTD++D ++  CSG FTL A  D     +  +   LTVTSP  GD A AG  YTV +DY + +GS   RF I+LY    G G C G +V TLCDKP IGC DSQGDYD+ + +D P G Y +R+  F D   + CS  F +V+D
Sbjct:   12 GMLGAANA----LEVVSPAAGISVIADRTYTVEWTGTSDSRF-EIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTSSG-YKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGY--SLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDC-GTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVND 246          
BLAST of mRNA_E-fasciculatus_F_contig1413.3026.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 2.500e-73
Identity = 130/241 (53.94%), Postives = 160/241 (66.39%), Query Frame = 1
Query:  205 GLLDVASAAGEDFRVVTPSEGMTVISSRTYTVEWTNNFANSFVEIDLYYCGSNCEEDECGQWITSLCPFGKDGCPDNEGDYDVVMPEPMAGTSGGTYKVGVTDADDPTNQSCSGGFTLTALEDIVVDSDADFVQGLTVTSPEAGDLAYAGEEYTVLFDYFSEVGSRVGRFNIELYEDNGLGGCNGDFVTTLCDKPDIGCKDSQGDYDIVM-ADVPTGEYKIRISRFEDTATYGCSGVFFVV 924
            G+L  A+A      VV+P+ G  V++   YTVEWT   +  + +IDLYYCGS C EDECG W+T+LCP+G DGCPD +GDYDVVMPEPM GTS G YKV VTD+ D ++  CSG FTL A  +       D    ++VTSP  GD A AG EYTV FDY + +GS V RF I+LY   G G C G +VTT+CDKP IGCKDSQGDYD+V+ +   +G Y IR+  FED   YGCS  F +V
Sbjct:   12 GMLGAANA----LEVVSPAAGDMVVADSAYTVEWTGATSGRY-DIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSSG-YKVMVTDSSDESDYGCSGDFTLIASTE--APDATDMGAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDC-GTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243          
BLAST of mRNA_E-fasciculatus_F_contig1413.3026.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 2.320e-70
Identity = 130/258 (50.39%), Postives = 163/258 (63.18%), Query Frame = 1
Query:  163 MGRTAAVVAGAALVGLLDVASAAGEDFRVVTPSEGMTVISSRTYTVEWTNNFANSFVEIDLYYCGSNCEEDECGQWITSLCPFGKDGCPDNEGDYDVVMPEPMAGTSGGTYKVGVTDADDPTNQSCSGGFTLTALEDIVVDSDADFVQGLTVTSPEAGDLAYAGEEYTVLFDYFSEVGSRVGRFNIELYEDNGLGGCNGDFVTTLCDKPDIGCKDSQGDYDI-VMADVPTGEYKIRISRFEDTATYGCSGVFFVVSDD 933
            M RTA     A   G+L  A+A      VV+P  G++V++ R YTVEWT      F EIDLYYC S C +D CG W+T+LCP+G DGCPD+ GDYD++MPEPM+GTS G YKV V +A+D ++  CS  FTL A ED     +  +   LTVTSP  GD A AGE YTV +DY +  GS   RF ++LY   G G C G +VTTLCD+P IGC DSQGDYD+ + +D P G Y IR+  F+D   Y CS  F V + D
Sbjct:    1 MARTAFA---AVAFGMLSAANA----LEVVSPDGGISVLADRAYTVEWTGTTTGRF-EIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTSSG-YKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGY--SLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDC-GTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSD 246          
BLAST of mRNA_E-fasciculatus_F_contig1413.3026.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 6.280e-64
Identity = 117/216 (54.17%), Postives = 142/216 (65.74%), Query Frame = 1
Query:  163 MGRTAAVVAGAALVGLLDVASAAGEDFRVVTPSEGMTVISSRTYTVEWTNNFANSFVEIDLYYCGSNCEEDECGQWITSLCPFGKDGCPDNEGDYDVVMPEPMAGTSGGTYKVGVTDADDPTNQSCSGGFTLTALEDIVVDSDADFVQGLTVTSPEAGDLAYAGEEYTVLFDYFSEVGSRVGRFNIELYEDNGLGGCNGDFVTTLCDKPDIGCKDS 810
            M RT  V     ++G       A    +V TPS+G+TVI+ RTYTVEWT   +++  EIDLYYCGS C ED+CG W+T+LCP+G+DGCPDNEGDYD+VMPEPM+GTSG  YKV V D  D  +  CS  F L A  +     D D    L VTSP +GDLA    EYTV FDY + VGSRV RF I+LY  +G G C G +V ++CDKP IGCKDS
Sbjct:    2 MARTGFVALACGMLG-------AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPT-LEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDC-GTYVQSICDKPTIGCKDS 208          
BLAST of mRNA_E-fasciculatus_F_contig1413.3026.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 6.940e-58
Identity = 111/193 (57.51%), Postives = 130/193 (67.36%), Query Frame = 1
Query:  370 EDECGQWITSLCPFGKDGCPDNEGDYDVVMPEPMAGTSGGTYKVGVTDADDPTNQSCSGGFTLTALED--IVVDSDADFVQGLTVTSPEAGDLAYAGEEYTVLFDYFSEVGSRVGRFNIELYEDNGLGGCNGDFVTTLCDKPDIGCKDSQGDYDIVMAD-VPTGEYKIRISRFEDTATYGCSGVFFVVSDDGG 939
            EDECG+W+T+LCP+G +GCPDNEGDYD+VMPEPM+GTSG  YKV V D D P +  CS  F L A  +  +V   DA +   L VTSP AGD A AG EYTV FDY + VGSRV RF I+LY   G G C G +V  LCDK  IGCKDS GDYD+ + + V  G Y IR+ RFED A YGCSG F +V    G
Sbjct:   13 EDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPY---LMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDC-GTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIVGSSSG 201          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1413.3026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7G9C0_ECTSI2.420e-13973.15EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LI46_ECTSI1.040e-8155.92EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FYL2_ECTSI2.180e-8153.88EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
A0A6H5JFT9_9PHAE2.330e-8157.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRG9_9PHAE2.620e-7953.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3F0_ECTSI4.900e-7453.69EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G3E8_ECTSI2.500e-7353.94Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JY62_9PHAE2.320e-7050.39GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
D7FH21_ECTSI6.280e-6454.17Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5JEJ8_9PHAE6.940e-5857.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1413contigE-fasciculatus_F_contig1413:11961..16499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons6
Model size1977
Cds size912
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1413.3026.1prot_E-fasciculatus_F_contig1413.3026.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1413 12123..15596 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927904.7872186-UTR-E-fasciculatus_F_contig1413:11960..121221622927904.7872186-UTR-E-fasciculatus_F_contig1413:11960..12122Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1413 11961..12122 +
1695995745.9718182-UTR-E-fasciculatus_F_contig1413:11960..121221695995745.9718182-UTR-E-fasciculatus_F_contig1413:11960..12122Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1413 11961..12122 +
1622927904.9841583-UTR-E-fasciculatus_F_contig1413:15596..164991622927904.9841583-UTR-E-fasciculatus_F_contig1413:15596..16499Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1413 15597..16499 +
1695995746.047223-UTR-E-fasciculatus_F_contig1413:15596..164991695995746.047223-UTR-E-fasciculatus_F_contig1413:15596..16499Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1413 15597..16499 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927904.809143-CDS-E-fasciculatus_F_contig1413:12122..122471622927904.809143-CDS-E-fasciculatus_F_contig1413:12122..12247Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1413 12123..12247 +
1695995745.981877-CDS-E-fasciculatus_F_contig1413:12122..122471695995745.981877-CDS-E-fasciculatus_F_contig1413:12122..12247Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1413 12123..12247 +
1622927904.8249586-CDS-E-fasciculatus_F_contig1413:13178..132631622927904.8249586-CDS-E-fasciculatus_F_contig1413:13178..13263Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1413 13179..13263 +
1695995745.9952018-CDS-E-fasciculatus_F_contig1413:13178..132631695995745.9952018-CDS-E-fasciculatus_F_contig1413:13178..13263Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1413 13179..13263 +
1622927904.843343-CDS-E-fasciculatus_F_contig1413:13744..138701622927904.843343-CDS-E-fasciculatus_F_contig1413:13744..13870Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1413 13745..13870 +
1695995746.0057678-CDS-E-fasciculatus_F_contig1413:13744..138701695995746.0057678-CDS-E-fasciculatus_F_contig1413:13744..13870Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1413 13745..13870 +
1622927904.8616776-CDS-E-fasciculatus_F_contig1413:14331..145051622927904.8616776-CDS-E-fasciculatus_F_contig1413:14331..14505Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1413 14332..14505 +
1695995746.0194104-CDS-E-fasciculatus_F_contig1413:14331..145051695995746.0194104-CDS-E-fasciculatus_F_contig1413:14331..14505Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1413 14332..14505 +
1622927904.8800216-CDS-E-fasciculatus_F_contig1413:14921..150601622927904.8800216-CDS-E-fasciculatus_F_contig1413:14921..15060Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1413 14922..15060 +
1695995746.0276272-CDS-E-fasciculatus_F_contig1413:14921..150601695995746.0276272-CDS-E-fasciculatus_F_contig1413:14921..15060Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1413 14922..15060 +
1622927904.9694269-CDS-E-fasciculatus_F_contig1413:15333..155961622927904.9694269-CDS-E-fasciculatus_F_contig1413:15333..15596Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1413 15334..15596 +
1695995746.0359604-CDS-E-fasciculatus_F_contig1413:15333..155961695995746.0359604-CDS-E-fasciculatus_F_contig1413:15333..15596Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1413 15334..15596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1413.3026.1

>prot_E-fasciculatus_F_contig1413.3026.1 ID=prot_E-fasciculatus_F_contig1413.3026.1|Name=mRNA_E-fasciculatus_F_contig1413.3026.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=304bp
MGRTAAVVAGAALVGLLDVASAAGEDFRVVTPSEGMTVISSRTYTVEWTN
NFANSFVEIDLYYCGSNCEEDECGQWITSLCPFGKDGCPDNEGDYDVVMP
EPMAGTSGGTYKVGVTDADDPTNQSCSGGFTLTALEDIVVDSDADFVQGL
TVTSPEAGDLAYAGEEYTVLFDYFSEVGSRVGRFNIELYEDNGLGGCNGD
FVTTLCDKPDIGCKDSQGDYDIVMADVPTGEYKIRISRFEDTATYGCSGV
FFVVSDDGGSEDDDMDSDDDTALSFDFGDLTDDIQDSSLDTADDIEWDYS
YRF*
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mRNA from alignment at E-fasciculatus_F_contig1413:11961..16499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1413.3026.1 ID=mRNA_E-fasciculatus_F_contig1413.3026.1|Name=mRNA_E-fasciculatus_F_contig1413.3026.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4539bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1413:11961..16499+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACCACACCTCCTTCCCCCTACCCTCTCCTCCCGAAAACACCTCACTAGA AGAACTTCAGGCGCGGAACGCGGCAAACGGGTACCTACCCTCCCCAAGAC CCAGCTCCGGCCGCACTGTATTTCCTCCGCAACGCTTCGCCTTCCGTCGT TGCGCTTGAACTATGGGTCGAACTGCTGCTGTGGTTGCGGGTGCTGCTCT CGTCGGCTTGCTCGACGTCGCGTCTGCTGCCGGTGAAGACTTCCGAGTTG TTACGCCGTCTGAAGGGATGACCGTGATCTCAAGCAGGTGCGCCCGAGTG TGATACAGGATGCCACCCGGCGTGGGGCGAAGGGACCTACCTATCGTTTT ATGTCACAAGGCGGATAATTTAGTCTATATTGCATACTTCCTTCATTCTT GGAAGTGCTGGTATAGTCCACGCTTTTCATGTTGATGAATTCTCAAGCTT CCAGCACTTGCCCTCTCCGCAAGTGCTCAGGTGGTAGGGTGCGACCGACC TCTTGTACGTTTGTGTTGGACTGCTGCATGAGTAGTTTTCCATCGCTGTG AAACTTGTGGAGAGGACCCGAAAAAATCGTTCACCATGGACATCGGAATA TTATCGGGTCTCATTCGAATACAAAAAATCACGGGCATCGATAGGACCCC ATCGATGCCAGTTCGTCTGTGGTCGAGAAAACCTTCCTCGCTCCTCGCAC TTATACTGCAGCCTAGCTGTGTGAAAGCGCGGCGTTCCGACCGACTATTG TAATTAAAGGGTATGCATATGTAGGACGGTAAATCCCTGGGTATGGCTGA CCGTGGGTCACACGAACAACAAATCTGGTCAAACGTAGTAACTTCCAATC GGTATCGGGGTAGCTCTTACGTATTGCCGACGAGACTACGCAGAATAATT GAACTTCAAGGGATCCTAGGTGTGGCATTGGGTTACGCAGGTCTTTTGCC AGGACCTATCCTTGTGACATATATTTACTAGAACATGTACGCGATATTCA ATACCTATACTCCTTTCTTCAGCGTCGTGTGTGAAGTCAGGCGAATTCAG ACTACCGACGGCTCATGGCTTCTTTTCGTGCCTTTCCTGTTCGTCTTTGC TCGCCCGAGCTCGTCTCAAAGGTGTGGCAATGTAAAATAGGCTTCGTTCA TTCATGGTGAAATATTTTTTTGGGAGTTGACTCACATGCTCTTTTGTCAT GTACCATGCTCCTTGCAGGACGTATACGGTGGAGTGGACCAATAACTTCG CCAACAGCTTCGTCGAGATCGATCTATACTACTGCGGCTCCAACTGTGAA GAGGTATGGGTTTTGCATCCTGTGGTGGGATTGGCATCTCAATGGACACG AAAGGGCAAGTGACGGAGCTTTCACTGTATTTGCTGATACAGCAGTCATT CGGGAGGCATTGGTCTGCTCAGACACAATCCGTACTACGTGCTCGACGGA AGCATGTAGTCGATGACATCAACGCCAACCCCGCCTTATATGCATAGCTG TTTCTGATTACTCGTTGTGCGAGTCGCATGTTTGGTAGAGGTCCGTAGAT AGAGAAAACCCTCACTGTTCGGGGCGGATTCAAGGCTCAATTTCTTATTT CCTTCGTTACCACGGCGAGCAGCCAAACATGTAGAGGTTATCTATAGAGA AACACCCATTGTTTTTTGTTGTCTCGCGAAATGTGAGCTGGTTTTTTTCT TACTGTCGTTGCGGGCCCGCCATGTTCCGTTGAATCCTGGTGACGAGATG TCGTTTGTGTCTCGGTATCCCTCCTCTGCCTTAGGACGAGTGTGGCCAGT GGATCACCTCGCTTTGCCCGTTCGGGAAGGACGGATGCCCCGACAACGAA GGAGATTACGACGTCGTCATGCCAGAGCCTATGGCCGGGACCTCCGGGGG AACATACAAGGTTTGCGGCAAGCTATTTCGGAAATATAACATGAAGAGCT TCATTCGAATCTGGGTCGTCCTACAGTAAATACAGTATTCAGACAAAGAC GCAGCCGTTGTAAAACGGGTATCCTGTAGAATAGACTAATGGGCGAAAAA AAATGGTGGTGGACGCGTTGAACGTACGCCAGTTTCACCTGCAGACAAGC GCACAATAGCTACTGAACTGAATCGTACCCGTTGGCCCACTACAGAAGTC TATGGCATGGACCATCCCCGTATCGTCATCAGCCACGAATCTACCATGTC ATTGCATGGTGAACTGAAGACAAAAAAAAATGAAAACTCTCCCTCCAAGT ACTCAAATCAACTTTTTGAATTGCAGTGAAAGAGTGGGGCTTAAATGTGC ACTCACAAACTTGACGCGCGAGCATTAACATTCATTCGCGTCATCCCCGA ATTTTGGTCGCTCGCCTTCAGGTGGGCGTGACAGACGCCGACGACCCGAC CAACCAGTCCTGTTCGGGTGGATTCACGCTCACAGCACTTGAGGACATCG TCGTCGATTCGGACGCCGATTTCGTTCAGGGGTTGACCGTCACTTCGCCG GAGGCGGGGGACTTGGCCTACGCTGGCGAAGAATATACCGTGCTGGTGAG TAATGGTTTTCAATCTGCGATGTCGCGTTGTCGTTTCTCTTCATGACCTA TGCCATTGAAAGCATGAACGCTTAAACGTTCTCGCCACCCACCGCAGTGT GACCAATACGCGACATATGAACGTTAGGCACATCGATCGAGATAATAGAC GATTGATTCAGGTATTCAACAGACGCACGAGTATACTACTACTGCATGGT CACTAACTCAACGTCTCAGCACAGCGTTGAGGCATACAAACCTGTGTCGA TCCCCTCCTCGTCGAAGGGACGGATTGTGTACGATGAGCTTGAAGCCACC GCGTCCCAGTCATGAAGGCGTTCTGTCTGCATTGTATGCGAACATCCCCG AGAAGATCGAAACGACGTTGAATAATCCACTTGTTTTGTTGTGTGGTCGT CACTGCACCAGTTTGACTACTTCAGCGAGGTGGGCTCGAGGGTAGGCCGT TTCAACATAGAGCTCTACGAGGACAACGGGCTGGGTGGATGCAATGGGGA CTTTGTGACCACACTCTGCGACAAGCCCGACATCGGGTGCAAGGATTCAC GTGAGTACCAGTTCAATATCTTTGTTGGACACGCATGGAACGGCACCTGC AAAATTTCTCCAAGAAGAGCCCTTCCGGCAATGAATACATAGACTAAGAG TTCATTTCCCGGGATTCATCGCGCGGACGATCAACTGGCCGTAGTGTACG TACACTACTTGATCGATGTGGTGTGCCCTCTCGTTCAAAAGCCAGGCCAG GCCATCGTGGATGATTTATGCAACCCTCTCTGATAATTGTACGAATCAAC TCATTATGGTGTTGCACGCGCAGAGGGAGACTACGACATCGTCATGGCTG ATGTCCCCACCGGCGAGTACAAGATCCGTATCAGCAGGTTCGAGGATACC GCCACTTACGGCTGCTCCGGCGTCTTCTTCGTCGTGTCGGACGACGGAGG CAGCGAGGATGACGACATGGACTCGGATGATGACACCGCTTTGTCCTTCG ACTTCGGCGACTTGACGGATGACATACAGGACAGCTCCTTGGACACGGCC GATGACATCGAGTGGGACTACTCATACCGGTTTTGAGGTCTTCTCCGCAT GAAGCGTTGCGAACGGGGTGAAGAACAAAATTTCAAGCGATTTACAACGG AACCGGAGCGCGGAAGAAAATGTGTGGATGCTGTGTTCAGTCTCGAATTG TCAGGTGGTGGTGTCTCCGTTGTTGCAGTTTCGTGATCTGTTGGCTTGGC AGATCTTCAGCACAGCTCTTGTTTCATGCGATGGTTTTCGGGAAGCGACG GTAGAGGGCGTGTGCTTGCTCGTACCTCAATTGCGATGAGGGCTATCGAG CGTTTGTGTGGATTTTGACCACCGTCTGGTCGGCTATTGATACAAGATTA TGGGGTATGTAGCAAAACCGGCGAACCTTGAACCGGCCTCGTGGAACTTC CTACACGTGGCGTCGCTCGTAACGGATCCCCGTTTGTGGCAGAAAAGGGG CTGTCTGTATAGCACGGGTGTGGGTGAATGAAGTGACATTTTAGGTTGCA ATGTTTTTCATGTTGAGTGTAGCGGTTTGAAGAGCTCCCGGCCCAAAACT GCATTGGTTTCACGGTAGCTTGTTTCATGATTGTATTGTTTGGAGTTCAA TAGTGTGTTGTTAGCGATGACGCTCGCCACCCTTTCAACCGATCTCTTGC TGATCGTCTCTGCCCTGGTCTAGACATGCACCGGGTGCATATACAAACCA GAGAGGGGGTGGGGAGTCTTCTCCCGTTGAGCTTGTGTGGAAATGAGTTA AGAAGCGCGCTGATTGGTTTTTTGTCAGTCCGTGGTAGTTCGACATCGTC CGCTCGATATGAGTCCCAGGGTGATGTAAAGTTCAGGAGAATGTTTTTCC CATACTTCAAACCTCCGTTGTTACCCCCTTACGGCCGGCGCGCGAGAGAA GGAGTGAGACAAAAACTGTGGCCGAAAATCCCACCACAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1413:11961..16499+

>mRNA_E-fasciculatus_F_contig1413.3026.1 ID=mRNA_E-fasciculatus_F_contig1413.3026.1|Name=mRNA_E-fasciculatus_F_contig1413.3026.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1824bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1413:11961..16499+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGTCGAACTGCTGCTGTGGTTGCGGGTGCTGCTCTCGTCGGCTTGCT
CGACGTCGCGTCTGCTGCCGGTGAAGACTTCCGAGTTGTTACGCCGTCTG
AAGGGATGACCGTGATCTCAAGCAGATGGGTCGAACTGCTGCTGTGGTTG
CGGGTGCTGCTCTCGTCGGCTTGCTCGACGTCGCGTCTGCTGCCGGTGAA
GACTTCCGAGTTGTTACGCCGTCTGAAGGGATGACCGTGATCTCAAGCAG
GACGTATACGGTGGAGTGGACCAATAACTTCGCCAACAGCTTCGTCGAGA
TCGATCTATACTACTGCGGCTCCAACTGTGAAGAGGACGTATACGGTGGA
GTGGACCAATAACTTCGCCAACAGCTTCGTCGAGATCGATCTATACTACT
GCGGCTCCAACTGTGAAGAGGACGAGTGTGGCCAGTGGATCACCTCGCTT
TGCCCGTTCGGGAAGGACGGATGCCCCGACAACGAAGGAGATTACGACGT
CGTCATGCCAGAGCCTATGGCCGGGACCTCCGGGGGAACATACAAGGACG
AGTGTGGCCAGTGGATCACCTCGCTTTGCCCGTTCGGGAAGGACGGATGC
CCCGACAACGAAGGAGATTACGACGTCGTCATGCCAGAGCCTATGGCCGG
GACCTCCGGGGGAACATACAAGGTGGGCGTGACAGACGCCGACGACCCGA
CCAACCAGTCCTGTTCGGGTGGATTCACGCTCACAGCACTTGAGGACATC
GTCGTCGATTCGGACGCCGATTTCGTTCAGGGGTTGACCGTCACTTCGCC
GGAGGCGGGGGACTTGGCCTACGCTGGCGAAGAATATACCGTGCTGGTGG
GCGTGACAGACGCCGACGACCCGACCAACCAGTCCTGTTCGGGTGGATTC
ACGCTCACAGCACTTGAGGACATCGTCGTCGATTCGGACGCCGATTTCGT
TCAGGGGTTGACCGTCACTTCGCCGGAGGCGGGGGACTTGGCCTACGCTG
GCGAAGAATATACCGTGCTGTTTGACTACTTCAGCGAGGTGGGCTCGAGG
GTAGGCCGTTTCAACATAGAGCTCTACGAGGACAACGGGCTGGGTGGATG
CAATGGGGACTTTGTGACCACACTCTGCGACAAGCCCGACATCGGGTGCA
AGGATTCACTTTGACTACTTCAGCGAGGTGGGCTCGAGGGTAGGCCGTTT
CAACATAGAGCTCTACGAGGACAACGGGCTGGGTGGATGCAATGGGGACT
TTGTGACCACACTCTGCGACAAGCCCGACATCGGGTGCAAGGATTCACAG
GGAGACTACGACATCGTCATGGCTGATGTCCCCACCGGCGAGTACAAGAT
CCGTATCAGCAGGTTCGAGGATACCGCCACTTACGGCTGCTCCGGCGTCT
TCTTCGTCGTGTCGGACGACGGAGGCAGCGAGGATGACGACATGGACTCG
GATGATGACACCGCTTTGTCCTTCGACTTCGGCGACTTGACGGATGACAT
ACAGGACAGCTCCTTGGACACGGCCGATGACATCGAGTGGGACTACTCAT
ACCGGTTTTGAAGGGAGACTACGACATCGTCATGGCTGATGTCCCCACCG
GCGAGTACAAGATCCGTATCAGCAGGTTCGAGGATACCGCCACTTACGGC
TGCTCCGGCGTCTTCTTCGTCGTGTCGGACGACGGAGGCAGCGAGGATGA
CGACATGGACTCGGATGATGACACCGCTTTGTCCTTCGACTTCGGCGACT
TGACGGATGACATACAGGACAGCTCCTTGGACACGGCCGATGACATCGAG
TGGGACTACTCATACCGGTTTTGA
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