mRNA_E-fasciculatus_F_contig1413.3026.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1413.3026.1 vs. uniprot
Match: D7G9C0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9C0_ECTSI) HSP 1 Score: 418 bits (1074), Expect = 2.420e-139 Identity = 218/298 (73.15%), Postives = 232/298 (77.85%), Query Frame = 1
Query: 163 MGRTAAVVAGAALVGLLDVASAAGEDFRVVTPSEGMTVISSRTYTVEWTNNFANSFVEIDLYYCGSNCEEDECGQWITSLCPFGKDGCPDNEGDYDVVMPEPMAGTSGGTYKVGVTDADDPTNQSCSGGFTLTALEDIVVDSDADFVQGLTVTSPEAGDLAYAGEEYTVLFDYFSEVGSRVGRFNIELYEDNGLGGCNGDFVTTLCDKPDIGCKDSQGDYDIVMADVPTGEYKIRISRFEDTATYGCSGVFFVVSDDGGSEDXXMDSDDDTALSFDFGDLTDDIQDSSLDTADDIEWD 1056
M RTA VVAGAALVGLLDVAS AGE+F+V+ PSEGMTVISSRTYTVEWTNN NSFVEIDL YCGS+C+E ECGQWITSLCP+G+DGC D EGDYDVVMPEPMAGTSGG YK GLT SPE GDLAY G+EYTV FDYFSEV SRVGRFNIELYEDNGLGGCNG+FV+TLCDKPDIGCKDSQGDYDI+MADVPTGE KI ISRFEDTATYGCSG+FFVVSDDG SEDXX A SFDF DLTDDIQDS LDTADD+E+D
Sbjct: 1 MVRTAGVVAGAALVGLLDVASVAGEEFQVIAPSEGMTVISSRTYTVEWTNNVPNSFVEIDLCYCGSSCKEGECGQWITSLCPYGEDGCHDIEGDYDVVMPEPMAGTSGGAYK------------------------------------GLTFISPETGDLAYVGQEYTVQFDYFSEVDSRVGRFNIELYEDNGLGGCNGEFVSTLCDKPDIGCKDSQGDYDIIMADVPTGECKIHISRFEDTATYGCSGIFFVVSDDGDSEDXXXXXXXXIAFSFDFSDLTDDIQDSFLDTADDVEFD 262
BLAST of mRNA_E-fasciculatus_F_contig1413.3026.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 268 bits (686), Expect = 1.040e-81 Identity = 137/245 (55.92%), Postives = 164/245 (66.94%), Query Frame = 1
Query: 229 AGEDFRVVTPSEGMTVISSRTYTVEWTNNFANSFVEIDLYYCGSNCEEDECGQWITSLCPFGKDGCPDNEGDYDVVMPEPMAGTSGGTYKVGVTDADDPTNQSCSGGFTLTALEDIVVDSDADFVQGLTVTSPEAGDLAYAGEEYTVLFDYFSEVGSRVGRFNIELYEDNGLGGCNGDFVTTLCDKPDIGCKDSQGDYDI-VMADVPTGEYKIRISRFEDTATYGCSGVFFVVSDDGGSEDXXMD 960
A VVTP+EG V++SR YTVEWT +N+ EIDLYYCGS C EDECG W+T+LCP+G+DGCPDNEGDYD+VMPEPM+GTSG YKV V D DD + CS F L A + DA +TVTSP +GD A AGEEYTV FDY + +GS VGRF I+LY G G C G F+ TLCDKP IGCKDS GDYD+ + D G Y IR+ FED + YGCS F ++ D +D +D
Sbjct: 4 AASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPY-VTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDC-GTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDSPDDGDLD 246
BLAST of mRNA_E-fasciculatus_F_contig1413.3026.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 267 bits (682), Expect = 2.180e-81 Identity = 139/258 (53.88%), Postives = 171/258 (66.28%), Query Frame = 1
Query: 163 MGRTAAVVAGAALVGLLDVASAAGEDFRVVTPSEGMTVISSRTYTVEWTNNFANSFVEIDLYYCGSNCEEDECGQWITSLCPFGKDGCPDNEGDYDVVMPEPMAGTSGGTYKVGVTDADDPTNQSCSGGFTLTALEDIVVDSDADFVQGLTVTSPEAGDLAYAGEEYTVLFDYFSEVGSRVGRFNIELYEDNGLGGCNGDFVTTLCDKPDIGCKDSQGDYDI-VMADVPTGEYKIRISRFEDTATYGCSGVFFVVSDD 933
M RT V A++G A VVTPS + V++ RTYTVEWT + F EIDLY+CGS C ED CG W+T+LCP+G++GCPDNEGDYD+VMPEPM+G S YKV V D D + CS F L A ED D+ ++ LTVTSP GD A AGEEYTV FDY + VGS+V RF+I+LY +G G C G +VT++CDKP IGCKDS GDYD+ + AD G+YKIR+ RFED YGCSG F ++ D
Sbjct: 1 MARTGFVALACAMLG-------AANALEVVTPSADLIVVADRTYTVEWTGADSGRF-EIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASED-APDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDC-GTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGD 248
BLAST of mRNA_E-fasciculatus_F_contig1413.3026.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 267 bits (682), Expect = 2.330e-81 Identity = 141/247 (57.09%), Postives = 165/247 (66.80%), Query Frame = 1
Query: 205 GLLDVASAAGEDFRVVTPSEGMTVISSRTYTVEWTNNFANSFVEIDLYYCGSNCEEDECGQWITSLCPFGKDGCPDNEGDYDVVMPEPMAGTSGGTYKVGVTDADDPTNQSCSGGFTLTALEDIVVDSDADFVQGLTVTSPEAGDLAYAGEEYTVLFDYFSEVGSRVGRFNIELYEDNGLGGCNGDFVTTLCDKPDIGCKDSQGDYDI-VMADVPTGEYKIRISRFEDTATYGCSGVFFVVSDDGGS 942
G+L VASA VVTP+ G V+SSR YTVEW+ +N EIDLYYC S C EDECG+W+T+LCP+G+DGCPDNEGDYD+VMPEPM+GTSG YKV V D DD + CS F L A D SDA +TVTSP GD A AGEEYTV FDY + +GS VGRF I+LY G G C G F+ TLCDKP IGCKDS GDYD+ + D G Y IR+ FED + YGCS F ++ D S
Sbjct: 13 GMLGVASA----LEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPY-VTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDC-GTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADDSS 253
BLAST of mRNA_E-fasciculatus_F_contig1413.3026.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 262 bits (669), Expect = 2.620e-79 Identity = 142/264 (53.79%), Postives = 177/264 (67.05%), Query Frame = 1
Query: 205 GLLDVASAAGEDFRVVTPSEGMTVISSRTYTVEWTNNFANSFVEIDLYYCGSNCEEDECGQWITSLCPFGKDGCPDNEGDYDVVMPEPMAGTSGGTYKVGVTDADDPTNQSCSGGFTLTALEDIVVDSDADFVQGLTVTSPEAGDLAYAGEEYTVLFDYFSEVGSRVGRFNIELYEDNGLGGCNGDFVTTLCDKPDIGCKDSQGDYDI-VMADVPTGEYKIRISRFEDTATYGCSGVFFVVSDDGGSEDXXMDSDDDTALSFDF 993
G+L A+A +V TPS+G+TVI+ RTYTVEWT +++ EIDLYYCGS C ED+CG W+T+LCP+G+DGCPDNEGDYD+VMPEPM GTSG YKV V D D + CS F L A + D D L VTSP +GDLA EYTV FDY + VGS V RF I+LY +G G C G +V ++CDKP IGCKDS GDYD+ + D GEYKIR++RFED + Y CSG F + ++G DXX +D +LS+ F
Sbjct: 12 GMLGAANA----LKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPT-LEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDC-GTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI--EEGDDSDXXXXXEDAFSLSYRF 267
BLAST of mRNA_E-fasciculatus_F_contig1413.3026.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 248 bits (632), Expect = 4.900e-74 Identity = 131/244 (53.69%), Postives = 163/244 (66.80%), Query Frame = 1
Query: 205 GLLDVASAAGEDFRVVTPSEGMTVISSRTYTVEWTNNFANSFVEIDLYYCGSNCEEDECGQWITSLCPFGKDGCPDNEGDYDVVMPEPMAGTSGGTYKVGVTDADDPTNQSCSGGFTLTALEDIVVDSDADFVQGLTVTSPEAGDLAYAGEEYTVLFDYFSEVGSRVGRFNIELYE-DNGLGGCNGDFVTTLCDKPDIGCKDSQGDYDI-VMADVPTGEYKIRISRFEDTATYGCSGVFFVVSD 930
G+L A+A VV+P+ G++VI+ RTYTVEWT + F EIDLYYCGS C EDECG W+T+LCP+G DGCPD +GDYD+VMPEPMAGTS G YKV VTD++D ++ CSG FTL A D + + LTVTSP GD A AG YTV +DY + +GS RF I+LY G G C G +V TLCDKP IGC DSQGDYD+ + +D P G Y +R+ F D + CS F +V+D
Sbjct: 12 GMLGAANA----LEVVSPAAGISVIADRTYTVEWTGTSDSRF-EIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTSSG-YKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGY--SLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDC-GTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVND 246
BLAST of mRNA_E-fasciculatus_F_contig1413.3026.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 246 bits (627), Expect = 2.500e-73 Identity = 130/241 (53.94%), Postives = 160/241 (66.39%), Query Frame = 1
Query: 205 GLLDVASAAGEDFRVVTPSEGMTVISSRTYTVEWTNNFANSFVEIDLYYCGSNCEEDECGQWITSLCPFGKDGCPDNEGDYDVVMPEPMAGTSGGTYKVGVTDADDPTNQSCSGGFTLTALEDIVVDSDADFVQGLTVTSPEAGDLAYAGEEYTVLFDYFSEVGSRVGRFNIELYEDNGLGGCNGDFVTTLCDKPDIGCKDSQGDYDIVM-ADVPTGEYKIRISRFEDTATYGCSGVFFVV 924
G+L A+A VV+P+ G V++ YTVEWT + + +IDLYYCGS C EDECG W+T+LCP+G DGCPD +GDYDVVMPEPM GTS G YKV VTD+ D ++ CSG FTL A + D ++VTSP GD A AG EYTV FDY + +GS V RF I+LY G G C G +VTT+CDKP IGCKDSQGDYD+V+ + +G Y IR+ FED YGCS F +V
Sbjct: 12 GMLGAANA----LEVVSPAAGDMVVADSAYTVEWTGATSGRY-DIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSSG-YKVMVTDSSDESDYGCSGDFTLIASTE--APDATDMGAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDC-GTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243
BLAST of mRNA_E-fasciculatus_F_contig1413.3026.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 238 bits (607), Expect = 2.320e-70 Identity = 130/258 (50.39%), Postives = 163/258 (63.18%), Query Frame = 1
Query: 163 MGRTAAVVAGAALVGLLDVASAAGEDFRVVTPSEGMTVISSRTYTVEWTNNFANSFVEIDLYYCGSNCEEDECGQWITSLCPFGKDGCPDNEGDYDVVMPEPMAGTSGGTYKVGVTDADDPTNQSCSGGFTLTALEDIVVDSDADFVQGLTVTSPEAGDLAYAGEEYTVLFDYFSEVGSRVGRFNIELYEDNGLGGCNGDFVTTLCDKPDIGCKDSQGDYDI-VMADVPTGEYKIRISRFEDTATYGCSGVFFVVSDD 933
M RTA A G+L A+A VV+P G++V++ R YTVEWT F EIDLYYC S C +D CG W+T+LCP+G DGCPD+ GDYD++MPEPM+GTS G YKV V +A+D ++ CS FTL A ED + + LTVTSP GD A AGE YTV +DY + GS RF ++LY G G C G +VTTLCD+P IGC DSQGDYD+ + +D P G Y IR+ F+D Y CS F V + D
Sbjct: 1 MARTAFA---AVAFGMLSAANA----LEVVSPDGGISVLADRAYTVEWTGTTTGRF-EIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTSSG-YKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGY--SLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDC-GTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSD 246
BLAST of mRNA_E-fasciculatus_F_contig1413.3026.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 221 bits (562), Expect = 6.280e-64 Identity = 117/216 (54.17%), Postives = 142/216 (65.74%), Query Frame = 1
Query: 163 MGRTAAVVAGAALVGLLDVASAAGEDFRVVTPSEGMTVISSRTYTVEWTNNFANSFVEIDLYYCGSNCEEDECGQWITSLCPFGKDGCPDNEGDYDVVMPEPMAGTSGGTYKVGVTDADDPTNQSCSGGFTLTALEDIVVDSDADFVQGLTVTSPEAGDLAYAGEEYTVLFDYFSEVGSRVGRFNIELYEDNGLGGCNGDFVTTLCDKPDIGCKDS 810
M RT V ++G A +V TPS+G+TVI+ RTYTVEWT +++ EIDLYYCGS C ED+CG W+T+LCP+G+DGCPDNEGDYD+VMPEPM+GTSG YKV V D D + CS F L A + D D L VTSP +GDLA EYTV FDY + VGSRV RF I+LY +G G C G +V ++CDKP IGCKDS
Sbjct: 2 MARTGFVALACGMLG-------AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPT-LEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDC-GTYVQSICDKPTIGCKDS 208
BLAST of mRNA_E-fasciculatus_F_contig1413.3026.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE) HSP 1 Score: 213 bits (541), Expect = 6.940e-58 Identity = 111/193 (57.51%), Postives = 130/193 (67.36%), Query Frame = 1
Query: 370 EDECGQWITSLCPFGKDGCPDNEGDYDVVMPEPMAGTSGGTYKVGVTDADDPTNQSCSGGFTLTALED--IVVDSDADFVQGLTVTSPEAGDLAYAGEEYTVLFDYFSEVGSRVGRFNIELYEDNGLGGCNGDFVTTLCDKPDIGCKDSQGDYDIVMAD-VPTGEYKIRISRFEDTATYGCSGVFFVVSDDGG 939
EDECG+W+T+LCP+G +GCPDNEGDYD+VMPEPM+GTSG YKV V D D P + CS F L A + +V DA + L VTSP AGD A AG EYTV FDY + VGSRV RF I+LY G G C G +V LCDK IGCKDS GDYD+ + + V G Y IR+ RFED A YGCSG F +V G
Sbjct: 13 EDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPY---LMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDC-GTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIVGSSSG 201 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1413.3026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1413.3026.1 >prot_E-fasciculatus_F_contig1413.3026.1 ID=prot_E-fasciculatus_F_contig1413.3026.1|Name=mRNA_E-fasciculatus_F_contig1413.3026.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=304bp MGRTAAVVAGAALVGLLDVASAAGEDFRVVTPSEGMTVISSRTYTVEWTNback to top mRNA from alignment at E-fasciculatus_F_contig1413:11961..16499+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1413.3026.1 ID=mRNA_E-fasciculatus_F_contig1413.3026.1|Name=mRNA_E-fasciculatus_F_contig1413.3026.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4539bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1413:11961..16499+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1413:11961..16499+ >mRNA_E-fasciculatus_F_contig1413.3026.1 ID=mRNA_E-fasciculatus_F_contig1413.3026.1|Name=mRNA_E-fasciculatus_F_contig1413.3026.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1824bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1413:11961..16499+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |