mRNA_E-fasciculatus_F_contig1413.3025.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1413.3025.1
Unique NamemRNA_E-fasciculatus_F_contig1413.3025.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1413.3025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1413contigE-fasciculatus_F_contig1413:8346..8682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size337
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927904.380312-UTR-E-fasciculatus_F_contig1413:8345..83731622927904.380312-UTR-E-fasciculatus_F_contig1413:8345..8373Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1413 8346..8373 +
1695995745.7766786-UTR-E-fasciculatus_F_contig1413:8345..83731695995745.7766786-UTR-E-fasciculatus_F_contig1413:8345..8373Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1413 8346..8373 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927904.3965967-CDS-E-fasciculatus_F_contig1413:8373..86821622927904.3965967-CDS-E-fasciculatus_F_contig1413:8373..8682Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1413 8374..8682 +
1695995745.7869692-CDS-E-fasciculatus_F_contig1413:8373..86821695995745.7869692-CDS-E-fasciculatus_F_contig1413:8373..8682Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1413 8374..8682 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1413.3025.1prot_E-fasciculatus_F_contig1413.3025.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1413 8374..8682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1413.3025.1

>prot_E-fasciculatus_F_contig1413.3025.1 ID=prot_E-fasciculatus_F_contig1413.3025.1|Name=mRNA_E-fasciculatus_F_contig1413.3025.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=103bp
MVALARILDFFLKTETYFFAVRRKMYRRVRNNVEDSLLRVFTVQTKPLLW
RNRPLSSTLSLDIRDACSWVLRNIIRDWTVSVDELKHSFDFVDAPSSGKH
GEH
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mRNA from alignment at E-fasciculatus_F_contig1413:8346..8682+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1413.3025.1 ID=mRNA_E-fasciculatus_F_contig1413.3025.1|Name=mRNA_E-fasciculatus_F_contig1413.3025.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=337bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1413:8346..8682+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCTACATGGTTTCTTCTGTAGCCCTTGATGGTTGCGTTGGCCCGAATTT
TGGATTTTTTTTTAAAGACGGAAACATATTTTTTTGCTGTGCGAAGGAAA
ATGTATAGACGAGTGCGAAACAACGTCGAGGATTCATTGCTACGAGTATT
CACCGTGCAGACGAAACCGTTGCTATGGCGCAACAGGCCGCTGTCGAGCA
CTCTCTCTCTAGACATCCGAGATGCATGCAGCTGGGTGCTCCGTAATATC
ATCCGTGACTGGACTGTCAGCGTTGACGAGTTGAAGCACTCCTTTGATTT
CGTAGACGCCCCGTCTTCCGGGAAACATGGTGAGCAT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1413:8346..8682+

>mRNA_E-fasciculatus_F_contig1413.3025.1 ID=mRNA_E-fasciculatus_F_contig1413.3025.1|Name=mRNA_E-fasciculatus_F_contig1413.3025.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=618bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1413:8346..8682+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTTGCGTTGGCCCGAATTTTGGATTTTTTTTTAAAGACGGAAACATA
TTTTTTTGCTGTGCGAAGGAAAATGTATAGACGAGTGCGAAACAACGTCG
AGGATTCATTGCTACGAGTATTCACCGTGCAGACGAAACCGTTGCTATGG
CGCAACAGGCCGCTGTCGAGCACTCTCTCTCTAGACATCCGAGATGCATG
CAGCTGGGTGCTCCGTAATATCATCCGTGACTGGACTGTCAGCGTTGACG
AGTTGAAGCACTCCTTTGATTTCGTAGACGCCCCGTCTTCCGGGAAACAT
GGTGAGCATATGGTTGCGTTGGCCCGAATTTTGGATTTTTTTTTAAAGAC
GGAAACATATTTTTTTGCTGTGCGAAGGAAAATGTATAGACGAGTGCGAA
ACAACGTCGAGGATTCATTGCTACGAGTATTCACCGTGCAGACGAAACCG
TTGCTATGGCGCAACAGGCCGCTGTCGAGCACTCTCTCTCTAGACATCCG
AGATGCATGCAGCTGGGTGCTCCGTAATATCATCCGTGACTGGACTGTCA
GCGTTGACGAGTTGAAGCACTCCTTTGATTTCGTAGACGCCCCGTCTTCC
GGGAAACATGGTGAGCAT
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