mRNA_E-fasciculatus_F_contig14127.3021.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14127.3021.1 vs. uniprot
Match: D7FHB9_ECTSI (RPOLD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB9_ECTSI) HSP 1 Score: 230 bits (587), Expect = 1.580e-74 Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 1
Query: 1 VEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQYEYNYDCDCEDFCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVSS 342
VEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQYEYNYDCDCED+CDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVSS
Sbjct: 19 VEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQYEYNYDCDCEDYCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVSS 132
BLAST of mRNA_E-fasciculatus_F_contig14127.3021.1 vs. uniprot
Match: A0A835YK59_9STRA (Putative DNAdirected RNA polymerase II 36 kDa polypeptide A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK59_9STRA) HSP 1 Score: 171 bits (433), Expect = 1.600e-50 Identity = 82/113 (72.57%), Postives = 97/113 (85.84%), Query Frame = 1
Query: 1 VEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQYEYNYDCDCEDFCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVS 339
V+FVLS+TDTSVANALRRVMIAEVPTMAIDLVTI +NSS LQDEFL+HRLGL+PL +PG ++ YN DCDCED C++CS +LDVSW+ KA GRP+H +D PV VTS+DLVS
Sbjct: 19 VKFVLSDTDTSVANALRRVMIAEVPTMAIDLVTITENSSALQDEFLAHRLGLVPLRCEPGTKFVYNLDCDCEDNCEQCSVTLSLDVSWESKAAGRPDHEKDLPVFVTSSDLVS 131
BLAST of mRNA_E-fasciculatus_F_contig14127.3021.1 vs. uniprot
Match: A0A7S2Y381_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y381_9STRA) HSP 1 Score: 147 bits (370), Expect = 7.090e-41 Identity = 72/116 (62.07%), Postives = 93/116 (80.17%), Query Frame = 1
Query: 1 VEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPG--VQYEYNYDCDCEDFCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVSS 342
+ F LS+TD SVANALRRVMIAE PT+AIDLVTI N+SV+QDEFL+HRLGLIP+ G ++ +NYDCDCED+C +C+ +F+LDVS+D++A RP+H D P+ VTS DLVS+
Sbjct: 20 IRFELSDTDISVANALRRVMIAETPTLAIDLVTIETNTSVMQDEFLAHRLGLIPIRYHRGDVSKFRFNYDCDCEDYCHQCAVLFSLDVSFDQRAAMRPDHESDLPLTVTSQDLVSN 135
BLAST of mRNA_E-fasciculatus_F_contig14127.3021.1 vs. uniprot
Match: K0SEJ9_THAOC (RPOLD domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SEJ9_THAOC) HSP 1 Score: 122 bits (305), Expect = 2.330e-31 Identity = 63/123 (51.22%), Postives = 84/123 (68.29%), Query Frame = 1
Query: 1 VEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPG---------VQYEYNYDCDCEDFCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVSS 342
+ FVLS TDTS+AN LRR+MIAEVPT+AIDLV H+NSSVL DE+++HRLGLIP+ P + + +C C D C +CS F LDV++DK + RPE +D P+ VTS DL+++
Sbjct: 19 ITFVLSETDTSMANTLRRIMIAEVPTLAIDLVEYHENSSVLNDEYIAHRLGLIPIRYSPDGTLKGGDCHQAFVPHRECVCYDRCPRCSVEFDLDVNFDKVNMSRPEQERDLPLTVTSRDLIAN 141
BLAST of mRNA_E-fasciculatus_F_contig14127.3021.1 vs. uniprot
Match: A0A7S3Q1R6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q1R6_9STRA) HSP 1 Score: 121 bits (303), Expect = 4.700e-31 Identity = 64/123 (52.03%), Postives = 86/123 (69.92%), Query Frame = 1
Query: 1 VEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPL---------AADPGVQYEYNYDCDCEDFCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVSS 342
++F+LS TDTSVAN LRR+MIAEVPT+AIDLV I +NS+VL DE+++HRLGLIPL D + + +C C + C +CS F LDVS+D+K + RPE+ +D P VTS D+VS+
Sbjct: 19 IKFILSETDTSVANTLRRIMIAEVPTLAIDLVEIAENSTVLNDEYIAHRLGLIPLRYVAPDAVRGGDCHGAFLPHRECVCYERCPRCSVEFVLDVSFDEKVMDRPENERDLPFTVTSNDMVSN 141
BLAST of mRNA_E-fasciculatus_F_contig14127.3021.1 vs. uniprot
Match: UPI001E1D519E (DNA-directed RNA polymerase II subunit RPB3-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D519E) HSP 1 Score: 119 bits (299), Expect = 6.420e-31 Identity = 66/115 (57.39%), Postives = 79/115 (68.70%), Query Frame = 1
Query: 1 VEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGV-QYEYNYDCDCEDFCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVSS 342
++F+L +TD SVANALRRV IAEVPTMAID V I NS+VL DEF+SHR+GLIPL +D V + +Y+ DC CE+FC CS FTLDV D HVTSADL+SS
Sbjct: 19 IKFILEDTDLSVANALRRVCIAEVPTMAIDWVQIESNSTVLFDEFISHRIGLIPLTSDDVVDRMQYSRDCTCEEFCPDCSVEFTLDVKC----------QDDATRHVTSADLISS 123
BLAST of mRNA_E-fasciculatus_F_contig14127.3021.1 vs. uniprot
Match: A0A7S3M8K8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8K8_9STRA) HSP 1 Score: 119 bits (299), Expect = 2.090e-30 Identity = 57/116 (49.14%), Postives = 84/116 (72.41%), Query Frame = 1
Query: 1 VEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAA--DPGVQ-YEYNYDCDCEDFCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVS 339
+ F L++TD S+ANALRR+M+AE P + IDLV DN++VLQDEF++HRLGLIPL A D G+ + Y+++CDC+++C KCSA FT+D ++ P H Q+ + +T+ DL+S
Sbjct: 35 INFELTDTDISMANALRRIMMAETPILCIDLVEFEDNTTVLQDEFIAHRLGLIPLRATRDGGMAAWNYHFECDCDNYCQKCSATFTIDCDFNDIVSRLPMHQQEVAISITTRDLIS 150
BLAST of mRNA_E-fasciculatus_F_contig14127.3021.1 vs. uniprot
Match: A0A7K7NAE6_HALAL (RPB3 polymerase (Fragment) n=42 Tax=Neognathae TaxID=8825 RepID=A0A7K7NAE6_HALAL) HSP 1 Score: 114 bits (285), Expect = 2.140e-30 Identity = 61/115 (53.04%), Postives = 81/115 (70.43%), Query Frame = 1
Query: 1 VEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGV-QYEYNYDCDCEDFCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVSS 342
V+F++ NTD +VAN++RRV IAEVP +AID V I NSSVL DEF++HRLGLIPL +D V + +Y+ DC C++FC +CS FTLDV + +DQ HVTS DL+S+
Sbjct: 19 VKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKMQYSRDCTCDEFCPECSVEFTLDVRCN----------EDQTRHVTSRDLISN 123
BLAST of mRNA_E-fasciculatus_F_contig14127.3021.1 vs. uniprot
Match: UPI000FCD3A5F (DNA-directed RNA polymerase II subunit RPB3 isoform X2 n=1 Tax=Neopelma chrysocephalum TaxID=114329 RepID=UPI000FCD3A5F) HSP 1 Score: 116 bits (291), Expect = 3.530e-30 Identity = 62/115 (53.91%), Postives = 82/115 (71.30%), Query Frame = 1
Query: 1 VEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGV-QYEYNYDCDCEDFCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVSS 342
V+F++ NTD +VAN++RRV IAEVPT+AID V I NSSVL DEF++HRLGLIPL +D V + +Y+ DC C++FC +CS FTLDV + +DQ HVTS DL+S+
Sbjct: 19 VKFIIENTDLAVANSIRRVFIAEVPTIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKMQYSRDCTCDEFCPECSVEFTLDVRCN----------EDQTRHVTSRDLISN 123
BLAST of mRNA_E-fasciculatus_F_contig14127.3021.1 vs. uniprot
Match: A0A4Y2AAR6_ARAVE (DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2AAR6_ARAVE) HSP 1 Score: 113 bits (283), Expect = 6.790e-30 Identity = 62/115 (53.91%), Postives = 77/115 (66.96%), Query Frame = 1
Query: 1 VEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGVQ-YEYNYDCDCEDFCDKCSAVFTLDVSWDKKALGRPEHMQDQPVHVTSADLVSS 342
V+F + +TD SVAN+LRRV IAEVP +AID V + NSSVL DEF++HRLGLIPL +D V+ +Y+ DC C DFC CS FTLDV +DQ HVT+AD+ SS
Sbjct: 19 VKFFIEDTDLSVANSLRRVFIAEVPMLAIDWVQLEANSSVLHDEFIAHRLGLIPLTSDDSVERMQYSRDCTCSDFCPDCSIEFTLDVKC----------TEDQTRHVTTADMKSS 123 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14127.3021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14127.3021.1 >prot_E-fasciculatus_F_contig14127.3021.1 ID=prot_E-fasciculatus_F_contig14127.3021.1|Name=mRNA_E-fasciculatus_F_contig14127.3021.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=81bp MTTLASSKTSSYPTASASSPSRQTRGCSTSTTTTATAKTSATSARPCSRWback to top mRNA from alignment at E-fasciculatus_F_contig14127:398..2441- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14127.3021.1 ID=mRNA_E-fasciculatus_F_contig14127.3021.1|Name=mRNA_E-fasciculatus_F_contig14127.3021.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2044bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14127:398..2441- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14127:398..2441- >mRNA_E-fasciculatus_F_contig14127.3021.1 ID=mRNA_E-fasciculatus_F_contig14127.3021.1|Name=mRNA_E-fasciculatus_F_contig14127.3021.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=486bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14127:398..2441- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |