mRNA_E-fasciculatus_F_contig14124.3020.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14124.3020.1
Unique NamemRNA_E-fasciculatus_F_contig14124.3020.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14124.3020.1 vs. uniprot
Match: D7G733_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G733_ECTSI)

HSP 1 Score: 379 bits (974), Expect = 2.980e-129
Identity = 190/196 (96.94%), Postives = 194/196 (98.98%), Query Frame = 1 
Query:    1 ISLISSLLCMAYLSREQPAPVEEGKPKRPPPVKGTRSPVPCYFRWLQHISWVLTCISSMVVLSVFWMTIYSSEVPVTSVYVSATILALLMLLDQFLIATEMKFKYAWLGLYFFVVYIFYNVIYYYEHNVEDRVTFEVFDWDESPGRACLWVFLILAFGVPGFTALHVFVYRLRERMYTSYKHNLEVVEEEEPAPKT 588
            ISLISSLLCMAYLSRE+PAPVEEGKPKRPPPVKGTRSPVPCYFRWLQHISWVLTCISSMVVLSVFWMTIY S+VPVTSVYVS+TILALLMLLDQFLIATEMKFKYAWLGLYFFVVYIFYNVIYYYEHNVEDRVTFEVFDWDE PGRACLWVFLILAFGVPGFTALHVFVYRLRERMYTSYKHNLEV+EEEEPAPKT
Sbjct:   91 ISLISSLLCMAYLSREKPAPVEEGKPKRPPPVKGTRSPVPCYFRWLQHISWVLTCISSMVVLSVFWMTIYESDVPVTSVYVSSTILALLMLLDQFLIATEMKFKYAWLGLYFFVVYIFYNVIYYYEHNVEDRVTFEVFDWDERPGRACLWVFLILAFGVPGFTALHVFVYRLRERMYTSYKHNLEVIEEEEPAPKT 286
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BLAST of mRNA_E-fasciculatus_F_contig14124.3020.1 vs. uniprot
Match: A0A6H5JSI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI9_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 4.440e-23
Identity = 65/185 (35.14%), Postives = 100/185 (54.05%), Query Frame = 1 
Query:    1 ISLISSLLCMAYLS-REQPAPVEEGKP-------KRPPPVKGTRSPVPCYFRWLQHISWVLTCISSMVVLSVFWMTIYSSEVPVTSVYVSATILALLMLLDQFLIATEMKFKYAWLGLYFFVVYIFYNVIYYYEHNVEDRVTFEVFDWDESPGRACLWVFLILAFGVPGFTALHVFVYRLRERMY 531
            +S +S+ LC   ++      PV +G P        RP    G+  PVP   R LQ   W   CI S++V+S+FW  +Y  +   T    +   +A +MLLDQFL+A E K +Y      F V+YIF+NV +YY    +DR+ + + DW+++   AC++ F  +  G P F  +H  ++RLRER+Y
Sbjct:   73 VSALSAFLCWRAIAVTVASGPVRDGDPAFDAPTSSRPSDRTGSPQPVPAALRHLQLALWSTACIVSLIVVSIFWGALYDGDKLTTVDEQAHVFVACIMLLDQFLVADEFKLRYVLFPQAFGVIYIFFNVGWYYLAPDDDRLIYIILDWEDNTLGACIYAFGAILVGAPLFGLVHFGIFRLRERVY 257
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BLAST of mRNA_E-fasciculatus_F_contig14124.3020.1 vs. uniprot
Match: D7G734_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G734_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.960e-16
Identity = 50/150 (33.33%), Postives = 79/150 (52.67%), Query Frame = 1 
Query:   82 RPPPVKGTRSPVPCYFRWLQHISWVLTCISSMVVLSVFWMTIYSSEVPVTSVYVSATILALLMLLDQFLIATEMKFKYAWLGLYFFVVYIFYNVIYYYEHNVEDRVTFEVFDWDESPGRACLWVFLILAFGVPGFTALHVFVYRLRERMY 531
            RP    G+  PVP   R LQ + W   CI S++V+++FW  +                     LLDQFL+A E K +Y      F V+Y+F+NV +YY    +DR+ + + DW+++   AC++ F  +  G P F  +H+ ++RLRE +Y
Sbjct:    4 RPYDRTGSPQPVPAVLRHLQLVLWSTACIGSLIVVTIFWGAL---------------------LLDQFLVADEFKLRYILFPQAFGVIYLFFNVGWYYLAPDDDRLIYIILDWEDNTLGACIYAFGAILVGAPLFGLVHLGLFRLRESVY 132
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14124.3020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G733_ECTSI2.980e-12996.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JSI9_9PHAE4.440e-2335.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G734_ECTSI1.960e-1633.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14124contigE-fasciculatus_F_contig14124:556..3419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_011210.1
Exons4
Model size789
Cds size762
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14124.3020.1prot_E-fasciculatus_F_contig14124.3020.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14124 556..3392 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927903.97417-CDS-E-fasciculatus_F_contig14124:555..8321622927903.97417-CDS-E-fasciculatus_F_contig14124:555..832Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14124 556..832 -
1695995745.6435745-CDS-E-fasciculatus_F_contig14124:555..8321695995745.6435745-CDS-E-fasciculatus_F_contig14124:555..832Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14124 556..832 -
1622927903.9947686-CDS-E-fasciculatus_F_contig14124:1265..15071622927903.9947686-CDS-E-fasciculatus_F_contig14124:1265..1507Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14124 1266..1507 -
1695995745.652313-CDS-E-fasciculatus_F_contig14124:1265..15071695995745.652313-CDS-E-fasciculatus_F_contig14124:1265..1507Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14124 1266..1507 -
1622927904.0126395-CDS-E-fasciculatus_F_contig14124:2114..21771622927904.0126395-CDS-E-fasciculatus_F_contig14124:2114..2177Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14124 2115..2177 -
1695995745.6660986-CDS-E-fasciculatus_F_contig14124:2114..21771695995745.6660986-CDS-E-fasciculatus_F_contig14124:2114..2177Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14124 2115..2177 -
1622927904.0310106-CDS-E-fasciculatus_F_contig14124:3212..33921622927904.0310106-CDS-E-fasciculatus_F_contig14124:3212..3392Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14124 3213..3392 -
1695995745.6760137-CDS-E-fasciculatus_F_contig14124:3212..33921695995745.6760137-CDS-E-fasciculatus_F_contig14124:3212..3392Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14124 3213..3392 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927904.0534253-UTR-E-fasciculatus_F_contig14124:3392..34191622927904.0534253-UTR-E-fasciculatus_F_contig14124:3392..3419Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14124 3393..3419 -
1695995745.6856043-UTR-E-fasciculatus_F_contig14124:3392..34191695995745.6856043-UTR-E-fasciculatus_F_contig14124:3392..3419Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14124 3393..3419 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14124.3020.1

>prot_E-fasciculatus_F_contig14124.3020.1 ID=prot_E-fasciculatus_F_contig14124.3020.1|Name=mRNA_E-fasciculatus_F_contig14124.3020.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=254bp
MAYLSREQPAPVEEGKPKRPPPVKGTRSPVPCYFRWLQHISWVLTCISSM
VVLSVFWMTIYSSEVPVTSVYVSATILALLMLLDQFLIATEMKFKYAWLG
LYFFVVYIFYNVIYYYEHNVEDRVTFEVFDWDESPGRACLWVFLILAFGV
PGFTALHVFVYRLRERMYTSYKHNLEVVEEEEPAPKTEKEEKKEAKKEAK
EEEKKEKKEKKEKKEKKKEEPPPLVVEAPPLAPAAVGGAALGSAAALAAA
PPSQ
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mRNA from alignment at E-fasciculatus_F_contig14124:556..3419-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14124.3020.1 ID=mRNA_E-fasciculatus_F_contig14124.3020.1|Name=mRNA_E-fasciculatus_F_contig14124.3020.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2864bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14124:556..3419- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATATCGTTGATATCGTCGTTACTGTGCATGGCGTACCTTTCTCGAGAACA
ACCGGCACCGGTCGAGGAAGGGAAGCCGAAACGACCACCCCCGGTCAAGG
GCACGAGGTCGCCGGTGCCCTGCTACTTCCGCTGGCTTCAGCACATCAGC
TGGGTGCTGACTTGCATCAGCTCGATGGTGGTGCTGTCGGTCTTCTGGAT
GACAATCGTGAGTTTTTGGAAGGGGGAAGAGAGGAAAAACATGTGTCCGC
TGACTGCACCGTACGGCAGCAGCCCCGCTATTGCATTTTCGCCAACATAG
GAATGTCTCCCACCGAGCCAAAAACCGATACTCGTTCGTTTGTCTGGCTC
CCAGTCCGGCCTGAGTGCTGCTGCAGTGTGTCCTTGATGCACTGAACACG
ACGGAAAGCAACCACCACCCACCCCGTCTCCTTATTTAGAGTAGACAGCA
ATCTTGATCATCTGCGGGCCTACCTACCCCCACCCGACAACGCCACAGGC
ACACCCAAGCTACTCTGCTGTGTGTGAAATCGTGGGCGTGTGGGATGAAT
ACAGTAGATTGATCTCCACTCTCTCTTTTCGGGTGCAAGCAAGCAAGAAA
AGGTCACGCAGATCGTAGAAAACGACTGCTGCAGCGACGAAGACTAACTC
TTGATTTCGAGTATTGTACAACGATTCTGTTTGTTCCAAAATATCTAGAT
CGTCCGAGGCAAGGCCGAAAAGATTTATCGAAAATATCGTTCTCACGCAC
ACGAGGAATATTTCACGCGACGGAAGTCAGTTCAACTTTTTCCTTGCAGA
GGAAACGAGTCTTTCGAAGTTGCCTCCGGGTCGGACGATAGGTATAATTT
TGTTACCCCGGCCATTTGTCCAGAGCCAGGATGTACACGTGTGTCAAAAC
AAACAACGCGCACCATCTTGCTGGAAGAGCATGAACGTGTACCTTTTTAT
CACATGTCCACTGCTGCTGTACGCACATGGGAGCACAGGAGTTCGAAAAT
TCTAGCCTTTGTCTACCGCCATCTTGCCCACCTTCAAGTTGCCTCCACCC
TACTTGTCTTCAAGTCTTCTTCAAGTTGAATGCGGTCCCTCGTGCCAGAC
CCATCGTCGGGGGCGGGGGGGGGGACCAGTACCCCGTATTTGCTTGCATA
CGTGCCTTATGTGTGTCTCACCGCGCCTTCGCACTTCTCATTGGCTCGCC
CTGCCCCCCGCCCGAAAATCGTCATGTTTGTTCGTTCCTCAGTACTCGAG
CGAGGTACCGGTGACCAGCGTCTACGTTAGCGCCACCATCCTGGCGCTCT
TGATGGTGAGTGCACCCAGCGAGGGCAAATAGATGCGGCCTTATAGCGGT
ACATGCAGGGTGAAGAAGACGACGGGTAAGCTGCGCGGAACAAGCACAAA
GGCGTACACGATGCCCTCCAGGCGAAACCGCTCATGTGGGCTGACTGCGG
CTGCTGCGATTGGTGGATAAATTTTTAGAGACTTGTGTCGTGTGTGTTGC
AAGTTAAGTTACAATTCCAGTGAATGAAGCAATCCCTTTGCGGTGCCTAC
TGGGCGGAACAAAAAACGGCAGTGGTTTTCGCTCAGATTCTCCTTTCTCT
TTGTGAGACTCTTGCTGGGTGTATACATGTGAAACAAATCCAGCATGGAG
GTTGGTTCTTGGCGAGGGGTCAGCGTCTAAAACGCAGATCTCGAGACGTG
GATTTCTACATGCATTGGCACCAGCATTGGCAAAACTCCAGTCCCCGCTT
TTCCGAACACGGACACAACGGTAGAGCATTTTCACCGTCGATTCACCGTC
GCCAAGTCCACCCCCCCCCCCCCCCCNNNNNNNNNNCCCCCCCCTCTCCT
TTTTACGGGACCGCCCACTAACTGACTGCGTCGACGTCATGCCGGCGGCT
GTCCCACCCCAGCTGCTGGATCAGTTCCTGATCGCGACGGAGATGAAGTT
CAAGTACGCCTGGCTTGGCCTCTACTTCTTCGTGGTGTACATCTTCTACA
ACGTCATCTACTACTACGAGCACAACGTGGAGGATAGAGTGACCTTCGAG
GTCTTCGATTGGGACGAGAGCCCAGGCAGGGCCTGCCTATGGGTGTTCCT
GATCCTCGCCTTCGGCGTGCCGGGCTTCACGGCCCTTCATGTCTTCGTGT
ACAGGTGTGTTGCTGTCGTGGCGATTCAAAACGACCTTTCATGTCTTGGT
GTAACAGGTGTGTTGTTGTCCTGTTGTGGCCGTTAAAAACGGCCCATGAT
GTCTTGTTGTACGGGTGTGTTGCTGTTCTCTTGTCGCCGAAAAAACGGCT
CTTTCTTATCCTGGTGTACAGGTGTGTTGTTGTCCTGTTGGGACCAGTTG
CCGTATTATGGTGATGCTGTTACGGCCGGGGAAAGTGGTCGATCATTGTG
GCTCGGGGTACGTGTGTCCCTCCTCCCCCACTTGTCAAACCCGTGCTTGT
CCAGCCCCCCCCCGTGTTGAGCCCATGCATATCCAGCCTGGGACCGCTGC
TGTTGTCACCAGCGTTAACCTACCTCGAGCTGTCTGACAAACTCTCAACG
CTCTTTGTTCCTTCCGCCCCAACAACGAATGAATCAGACTTCGCGAGCGA
ATGTACACCTCCTACAAGCACAACCTAGAGGTAGTCGAGGAGGAGGAACC
GGCGCCGAAGACCGAGAAGGAGGAGAAGAAGGAAGCCAAGAAGGAAGCGA
AGGAGGAGGAGAAGAAGGAGAAGAAGGAAAAGAAGGAGAAGAAGGAGAAG
AAGAAGGAGGAGCCGCCGCCGCTAGTGGTAGAGGCACCGCCGCTGGCGCC
TGCAGCTGTTGGCGGGGCGGCGCTAGGCAGTGCGGCGGCGTTGGCGGCGG
CGCCGCCATCCCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14124:556..3419-

>mRNA_E-fasciculatus_F_contig14124.3020.1 ID=mRNA_E-fasciculatus_F_contig14124.3020.1|Name=mRNA_E-fasciculatus_F_contig14124.3020.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1524bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14124:556..3419- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGTACCTTTCTCGAGAACAACCGGCACCGGTCGAGGAAGGGAAGCC
GAAACGACCACCCCCGGTCAAGGGCACGAGGTCGCCGGTGCCCTGCTACT
TCCGCTGGCTTCAGCACATCAGCTGGGTGCTGACTTGCATCAGCTCGATG
GTGGTGCTGTCGGTCTTCTGGATGACAATCATGGCGTACCTTTCTCGAGA
ACAACCGGCACCGGTCGAGGAAGGGAAGCCGAAACGACCACCCCCGGTCA
AGGGCACGAGGTCGCCGGTGCCCTGCTACTTCCGCTGGCTTCAGCACATC
AGCTGGGTGCTGACTTGCATCAGCTCGATGGTGGTGCTGTCGGTCTTCTG
GATGACAATCTACTCGAGCGAGGTACCGGTGACCAGCGTCTACGTTAGCG
CCACCATCCTGGCGCTCTTGATGTACTCGAGCGAGGTACCGGTGACCAGC
GTCTACGTTAGCGCCACCATCCTGGCGCTCTTGATGCTGCTGGATCAGTT
CCTGATCGCGACGGAGATGAAGTTCAAGTACGCCTGGCTTGGCCTCTACT
TCTTCGTGGTGTACATCTTCTACAACGTCATCTACTACTACGAGCACAAC
GTGGAGGATAGAGTGACCTTCGAGGTCTTCGATTGGGACGAGAGCCCAGG
CAGGGCCTGCCTATGGGTGTTCCTGATCCTCGCCTTCGGCGTGCCGGGCT
TCACGGCCCTTCATGTCTTCGTGTACAGCTGCTGGATCAGTTCCTGATCG
CGACGGAGATGAAGTTCAAGTACGCCTGGCTTGGCCTCTACTTCTTCGTG
GTGTACATCTTCTACAACGTCATCTACTACTACGAGCACAACGTGGAGGA
TAGAGTGACCTTCGAGGTCTTCGATTGGGACGAGAGCCCAGGCAGGGCCT
GCCTATGGGTGTTCCTGATCCTCGCCTTCGGCGTGCCGGGCTTCACGGCC
CTTCATGTCTTCGTGTACAGACTTCGCGAGCGAATGTACACCTCCTACAA
GCACAACCTAGAGGTAGTCGAGGAGGAGGAACCGGCGCCGAAGACCGAGA
AGGAGGAGAAGAAGGAAGCCAAGAAGGAAGCGAAGGAGGAGGAGAAGAAG
GAGAAGAAGGAAAAGAAGGAGAAGAAGGAGAAGAAGAAGGAGGAGCCGCC
GCCGCTAGTGGTAGAGGCACCGCCGCTGGCGCCTGCAGCTGTTGGCGGGG
CGGCGCTAGGCAGTGCGGCGGCGTTGGCGGCGGCGCCGCCATCCCAGACT
TCGCGAGCGAATGTACACCTCCTACAAGCACAACCTAGAGGTAGTCGAGG
AGGAGGAACCGGCGCCGAAGACCGAGAAGGAGGAGAAGAAGGAAGCCAAG
AAGGAAGCGAAGGAGGAGGAGAAGAAGGAGAAGAAGGAAAAGAAGGAGAA
GAAGGAGAAGAAGAAGGAGGAGCCGCCGCCGCTAGTGGTAGAGGCACCGC
CGCTGGCGCCTGCAGCTGTTGGCGGGGCGGCGCTAGGCAGTGCGGCGGCG
TTGGCGGCGGCGCCGCCATCCCAG
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