mRNA_E-fasciculatus_F_contig14123.3019.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14123.3019.1
Unique NamemRNA_E-fasciculatus_F_contig14123.3019.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14123.3019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14123contigE-fasciculatus_F_contig14123:2496..3103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size610
Cds size348
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927903.896861-UTR-E-fasciculatus_F_contig14123:2495..27551622927903.896861-UTR-E-fasciculatus_F_contig14123:2495..2755Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14123 2496..2755 +
1695995745.626092-UTR-E-fasciculatus_F_contig14123:2495..27551695995745.626092-UTR-E-fasciculatus_F_contig14123:2495..2755Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14123 2496..2755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927903.9183874-CDS-E-fasciculatus_F_contig14123:2755..31031622927903.9183874-CDS-E-fasciculatus_F_contig14123:2755..3103Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14123 2756..3103 +
1695995745.634699-CDS-E-fasciculatus_F_contig14123:2755..31031695995745.634699-CDS-E-fasciculatus_F_contig14123:2755..3103Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14123 2756..3103 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14123.3019.1prot_E-fasciculatus_F_contig14123.3019.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14123 2756..3103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14123.3019.1

>prot_E-fasciculatus_F_contig14123.3019.1 ID=prot_E-fasciculatus_F_contig14123.3019.1|Name=mRNA_E-fasciculatus_F_contig14123.3019.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=116bp
MLCVSTSGRRSTNVSDMGARAFPRSSPLVAPYGFAEGVCHRFVDRQSSST
RQLTHCSSIDVFFLRLPSLLQGPKLWCFENGQFLRTKQRGALCSGRRSKS
IPFHIHRNTSLSSVVR
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mRNA from alignment at E-fasciculatus_F_contig14123:2496..3103+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14123.3019.1 ID=mRNA_E-fasciculatus_F_contig14123.3019.1|Name=mRNA_E-fasciculatus_F_contig14123.3019.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=608bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14123:2496..3103+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACGGATCTATCGTCTCCGAAAGCGTGGAGGTAACAGGCGGTGGTGGTGA
ACGTTTTGTATGAAATAACAGCTTGTAGGTGCTCATGCCGTGCGGCAGTA
TGGGTGGGCTTGGTCGACGTCTGCAAGGCGGCGTCTTTTTGTGGAACTCG
GGTTGCTCCGTGCAAAACGCAGCAAGCGCTGAAGACGTGGACACGAAACC
TATGACGTGGTATTTTTTCGGGCGCGTTGGTGGCCATTCTCCTTTATCAA
GCCTCTTACTATGCTTTGTGTGAGTACCTCGGGGCGTCGAAGCACGAATG
TTAGCGATATGGGCGCAAGGGCCTTCCCACGGTCTTCTCCTCTTGTAGCG
CCTTACGGTTTTGCAGAAGGCGTCTGTCATCGCTTCGTTGACCGCCAAAG
CTCTTCCACAAGGCAACTAACTCACTGTAGCTCCATAGATGTGTTCTTTC
TTCGTTTACCGTCATTGTTGCAGGGCCCAAAATTGTGGTGCTTTGAAAAT
GGACAATTCTTGCGCACAAAGCAAAGGGGAGCGTTGTGCAGTGGTCGTCG
GTCGAAATCGATTCCCTTTCACATTCACCGCAACACCTCTCTCTCCTCGG
TTGTTCGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14123:2496..3103+

>mRNA_E-fasciculatus_F_contig14123.3019.1 ID=mRNA_E-fasciculatus_F_contig14123.3019.1|Name=mRNA_E-fasciculatus_F_contig14123.3019.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=696bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14123:2496..3103+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTTTGTGTGAGTACCTCGGGGCGTCGAAGCACGAATGTTAGCGATAT
GGGCGCAAGGGCCTTCCCACGGTCTTCTCCTCTTGTAGCGCCTTACGGTT
TTGCAGAAGGCGTCTGTCATCGCTTCGTTGACCGCCAAAGCTCTTCCACA
AGGCAACTAACTCACTGTAGCTCCATAGATGTGTTCTTTCTTCGTTTACC
GTCATTGTTGCAGGGCCCAAAATTGTGGTGCTTTGAAAATGGACAATTCT
TGCGCACAAAGCAAAGGGGAGCGTTGTGCAGTGGTCGTCGGTCGAAATCG
ATTCCCTTTCACATTCACCGCAACACCTCTCTCTCCTCGGTTGTTCGCAT
GCTTTGTGTGAGTACCTCGGGGCGTCGAAGCACGAATGTTAGCGATATGG
GCGCAAGGGCCTTCCCACGGTCTTCTCCTCTTGTAGCGCCTTACGGTTTT
GCAGAAGGCGTCTGTCATCGCTTCGTTGACCGCCAAAGCTCTTCCACAAG
GCAACTAACTCACTGTAGCTCCATAGATGTGTTCTTTCTTCGTTTACCGT
CATTGTTGCAGGGCCCAAAATTGTGGTGCTTTGAAAATGGACAATTCTTG
CGCACAAAGCAAAGGGGAGCGTTGTGCAGTGGTCGTCGGTCGAAATCGAT
TCCCTTTCACATTCACCGCAACACCTCTCTCTCCTCGGTTGTTCGC
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