mRNA_E-fasciculatus_F_contig14117.3015.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14117.3015.1
Unique NamemRNA_E-fasciculatus_F_contig14117.3015.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14117.3015.1 vs. uniprot
Match: D7FHB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB0_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 4.810e-59
Identity = 105/134 (78.36%), Postives = 114/134 (85.07%), Query Frame = 1 
Query:  124 VVELGDWVPWDFQSEDEEALSKSEDPHEIVPSPPLGGK-DGLMGEQKPPKAEPEGTQGGRNENTGGGNGEEKTLGEKPHQIYRKIRLRTSVSSPFGASHSDALQGHTLREGEDEVTYTETDCISGLPMFRGDLV 522
            VVE+GDWVPW+FQ EDEE LSKSE+  EIVPSPP GGK  GL GEQKPP AEP+  + G+N N GGG+GEEKT GEKP QIYRKIRLRTSVSSPFG SH+DALQGHTL E EDEVTYTETDCIS LPMFRG+LV
Sbjct: 1003 VVEIGDWVPWEFQCEDEEVLSKSEELQEIVPSPPRGGKYGGLKGEQKPPNAEPKRPEVGKNNNIGGGHGEEKTSGEKPRQIYRKIRLRTSVSSPFGTSHNDALQGHTLSESEDEVTYTETDCISKLPMFRGNLV 1136
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BLAST of mRNA_E-fasciculatus_F_contig14117.3015.1 vs. uniprot
Match: D7FHA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA9_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 2.560e-42
Identity = 103/243 (42.39%), Postives = 122/243 (50.21%), Query Frame = 1 
Query:   16 QLDTTLSITVATFARLARSPEFYRSTRPSTAHSKQQVVELGDWVPWDFQSEDEEALSKSEDPHEIVPSPPL-----------GGKDGLMGEQKPPKAEPEGTQGGRNENTG------------------------------GGNGEEKTLG---------------------------------EKPHQIYRKIRLRTSVSSPFGASHSDALQGHTLREGEDEVTYTETDCISGLPMFRGDLV 522
            QLDTTL I+   FARLARS EFYRSTR  T  SKQQV+ELGDWV W+FQ+EDEEA   S +  E+VP PPL           GG  GL G    P + P  T G   + T                                G G +  +                                   +P Q+YRK+RL+ +VSSP G+S ++  QGHTLREGEDEVTYTETDCISGLPMFRG+LV
Sbjct:   14 QLDTTLPISAEMFARLARSQEFYRSTRAETKLSKQQVMELGDWVVWEFQNEDEEAPRSSRNSEEVVPYPPLDRIRPVCLGLEGG--GLQGR---PGSHPSATTGQGAQQTAVVADTKMQMVRNLRRIYAAASSPTHSPPQPDGAGAQTAVSVAHNMFSNVVARRPGPFLRPHRHQXXXXXXXXXSEPQQMYRKVRLKYAVSSPIGSSQNEGAQGHTLREGEDEVTYTETDCISGLPMFRGNLV 251
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14117.3015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHB0_ECTSI4.810e-5978.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHA9_ECTSI2.560e-4242.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14117contigE-fasciculatus_F_contig14117:3..2087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLipid transfer domain protein
Ec32 orthologEc-03_004130.1
Exons4
Model size522
Cds size522
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14117.3015.1prot_E-fasciculatus_F_contig14117.3015.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14117 3..2087 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927903.2930744-CDS-E-fasciculatus_F_contig14117:2..841622927903.2930744-CDS-E-fasciculatus_F_contig14117:2..84Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14117 3..84 -
1695995745.261655-CDS-E-fasciculatus_F_contig14117:2..841695995745.261655-CDS-E-fasciculatus_F_contig14117:2..84Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14117 3..84 -
1622927903.3079207-CDS-E-fasciculatus_F_contig14117:868..9781622927903.3079207-CDS-E-fasciculatus_F_contig14117:868..978Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14117 869..978 -
1695995745.2717674-CDS-E-fasciculatus_F_contig14117:868..9781695995745.2717674-CDS-E-fasciculatus_F_contig14117:868..978Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14117 869..978 -
1622927903.3201807-CDS-E-fasciculatus_F_contig14117:1333..15401622927903.3201807-CDS-E-fasciculatus_F_contig14117:1333..1540Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14117 1334..1540 -
1695995745.284932-CDS-E-fasciculatus_F_contig14117:1333..15401695995745.284932-CDS-E-fasciculatus_F_contig14117:1333..1540Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14117 1334..1540 -
1622927903.3302047-CDS-E-fasciculatus_F_contig14117:1964..20871622927903.3302047-CDS-E-fasciculatus_F_contig14117:1964..2087Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14117 1965..2087 -
1695995745.3017511-CDS-E-fasciculatus_F_contig14117:1964..20871695995745.3017511-CDS-E-fasciculatus_F_contig14117:1964..2087Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14117 1965..2087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14117.3015.1

>prot_E-fasciculatus_F_contig14117.3015.1 ID=prot_E-fasciculatus_F_contig14117.3015.1|Name=mRNA_E-fasciculatus_F_contig14117.3015.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=174bp
SPAGGQLDTTLSITVATFARLARSPEFYRSTRPSTAHSKQQVVELGDWVP
WDFQSEDEEALSKSEDPHEIVPSPPLGGKDGLMGEQKPPKAEPEGTQGGR
NENTGGGNGEEKTLGEKPHQIYRKIRLRTSVSSPFGASHSDALQGHTLRE
GEDEVTYTETDCISGLPMFRGDLV
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mRNA from alignment at E-fasciculatus_F_contig14117:3..2087-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14117.3015.1 ID=mRNA_E-fasciculatus_F_contig14117.3015.1|Name=mRNA_E-fasciculatus_F_contig14117.3015.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2085bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14117:3..2087- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCCCAGCGGGAGGTCAGCTGGACACCACTTTGTCCATAACTGTCGCGAC
ATTTGCCCGGCTAGCGCGATCACCAGAGTTCTACCGGAGCACCAGGCCGT
CCACCGCCCACTCCAAACAGCAGGTGAAAATCCTCATTCATCTTGTCAAG
CTCCGATAACTCGTGGTGGGACAAGTATCACAGAATCGGTCACAACGTTG
TGCACTCGCCGTGTCAACAAAACCGTCCTAACAACCGTACGGGTGGCGGT
GAAGAGGTCGTAGTCACAGGTTACCATTGAGAATTTTCCGACCCTCACCC
GATGGAAATCAGACATAGACTAGTCTACATCGGTGTATTTCAGTCACAGG
CAAATAACTGTGCATACGTACACCCGCGTTGTGGTAGTTGGGCAAGCTTC
ATGACCCGAGTATTCACGTTTTTTTATCGCTCTGACGAGCAAGAGCGCCC
TCATGAAATTGCTTAACTCGCGAAGGACCAGTGGATGACGACAACACCCG
AAACTAACGTTGACGACGGCTGCGCCCCGTGCTTTTATCTCCGGCAGGTG
GTCGAGCTAGGCGACTGGGTTCCATGGGACTTCCAGAGCGAGGACGAGGA
AGCACTGTCTAAGAGCGAGGATCCCCACGAGATTGTACCGTCGCCCCCCC
TTGGGGGGAAAGACGGGCTTATGGGAGAACAGAAGCCCCCAAAAGCAGAG
CCCGAAGGGACACAAGGGGGAAGAAACGAAAACACCGGCGGCGGAAATGG
CGAGGTACTGTACAGAAGCACGTATGTGCTTTCGCGAGACAGACAGGAAC
ACTCAGTCAATAAAGGTATTGATCGATTGCCGCGAACCATCGCTGCTTGT
TTGCAGTGAGCCGAAGATGATTTTTTTTTCCGTTGTCGCTTGTGTCGGAG
TCTCTGCTTCCTTCGAACAGCTTCCTGCTGCTGCAGCACCAACATATTCC
CGCGACCCACATCGCTAACTCATTTCCAGTTCACTCTCCCCTCGCTATGA
TACTGAGCACTTGGAAATATTTCCGGCACGAGTCGTTCCCTTTTGTTTCA
TGTGCACAGTGAACTGGACGCTCGCTGCCCCCAACATTCCCGGTAACCTT
AAACAACAGGAGAAGACTTTGGGGGAGAAACCTCACCAGATATATCGCAA
GATCCGTCTGAGAACGTCGGTATCCTCGCCGTTCGGAGCTTCCCACAGCG
ACGCTCTTCAAGGACACACGTGAGAGGCGTGTGCTTCCTGGGGTTGCCTG
CCATGCGTGAAACACACCCTAACCGCAGACTTGAAGGTCTCGATGTCGGT
CGGTTGAGGCTTACGCACGCGTGTCCTCACGCTATGGTCATTTCACACGA
CCAAGGGAATCCATTCACTACCGGCACAGCTTACAGCTGGTTTTGGCGCG
CCGCGCGCTCGAAGACTGTCACTCCGTTCGTCACGAAGCGCCAGAGAACG
CTCTTCTTAGATAACGTTCTCTCAGAGAACACTTTCTTGATTCTCACGAA
TAACGGAAGAGTGAATATTCTCTCGTTGTTGTTGTTGTTGTTGTTGTTGC
TGCTGCACTCGCCCCTCTCCGAGCTCGTTGGCTACAATGTGCCACCCGGT
TTCCGTATGCCGCAAGTTAATCGCTGTGCGTGAGTGATTGCGAGGTAAAG
CCGCGCCGTTTGCACTTTGTACTTCGTGATAGTGTCGGACTTACCTTGCA
ATCATCTGACACGATACTGAGGCGTGACTTTGTCATATTGGAACCCAACG
ATAGCTAGGAACGAAGTGCCCGGCGCCACATATCGACCACACAGTTGAAG
ACTGTCTCCCAGGCTTCTCTATGCACGGCGGTATCGGGTCCACGCTTTCT
CGTTTTCACGGACGGCCGTGGATGCAACAATATTACATAGAACAACTGTT
ATTGGCAAACAAACAGGTTCGTCTCTCTGCGTCACTTTTTGTCTTGTTCA
CCAGTCCATTTATTGCGGTTCTTCCCCCGTGCCTTATTTTCTTCTTGGAT
CAGGTTGCGCGAGGGCGAGGACGAGGTGACCTACACGGAGACCGACTGCA
TCTCCGGGCTGCCCATGTTCCGCGGCGACCTGGTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14117:3..2087-

>mRNA_E-fasciculatus_F_contig14117.3015.1 ID=mRNA_E-fasciculatus_F_contig14117.3015.1|Name=mRNA_E-fasciculatus_F_contig14117.3015.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1044bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14117:3..2087- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCCCAGCGGGAGGTCAGCTGGACACCACTTTGTCCATAACTGTCGCGAC
ATTTGCCCGGCTAGCGCGATCACCAGAGTTCTACCGGAGCACCAGGCCGT
CCACCGCCCACTCCAAACAGCAGAGCCCAGCGGGAGGTCAGCTGGACACC
ACTTTGTCCATAACTGTCGCGACATTTGCCCGGCTAGCGCGATCACCAGA
GTTCTACCGGAGCACCAGGCCGTCCACCGCCCACTCCAAACAGCAGGTGG
TCGAGCTAGGCGACTGGGTTCCATGGGACTTCCAGAGCGAGGACGAGGAA
GCACTGTCTAAGAGCGAGGATCCCCACGAGATTGTACCGTCGCCCCCCCT
TGGGGGGAAAGACGGGCTTATGGGAGAACAGAAGCCCCCAAAAGCAGAGC
CCGAAGGGACACAAGGGGGAAGAAACGAAAACACCGGCGGCGGAAATGGC
GAGGTGGTCGAGCTAGGCGACTGGGTTCCATGGGACTTCCAGAGCGAGGA
CGAGGAAGCACTGTCTAAGAGCGAGGATCCCCACGAGATTGTACCGTCGC
CCCCCCTTGGGGGGAAAGACGGGCTTATGGGAGAACAGAAGCCCCCAAAA
GCAGAGCCCGAAGGGACACAAGGGGGAAGAAACGAAAACACCGGCGGCGG
AAATGGCGAGGAGAAGACTTTGGGGGAGAAACCTCACCAGATATATCGCA
AGATCCGTCTGAGAACGTCGGTATCCTCGCCGTTCGGAGCTTCCCACAGC
GACGCTCTTCAAGGACACACGAGAAGACTTTGGGGGAGAAACCTCACCAG
ATATATCGCAAGATCCGTCTGAGAACGTCGGTATCCTCGCCGTTCGGAGC
TTCCCACAGCGACGCTCTTCAAGGACACACGTTGCGCGAGGGCGAGGACG
AGGTGACCTACACGGAGACCGACTGCATCTCCGGGCTGCCCATGTTCCGC
GGCGACCTGGTCGTTGCGCGAGGGCGAGGACGAGGTGACCTACACGGAGA
CCGACTGCATCTCCGGGCTGCCCATGTTCCGCGGCGACCTGGTC
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