mRNA_E-fasciculatus_F_contig14116.3014.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14116.3014.1
Unique NamemRNA_E-fasciculatus_F_contig14116.3014.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14116.3014.1 vs. uniprot
Match: D7FTW8_ECTSI (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW8_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 6.810e-27
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1
Query:    7 KGAVGDCWFLAGLAVVSERADLIGRVVGSNGPLADELGCFEVNLFKDGRWE 159
            +GAVGDCWFLAGLAVVSERADLIGRVVGSNGPLADELGCFEVNLFKDGRWE
Sbjct:  280 QGAVGDCWFLAGLAVVSERADLIGRVVGSNGPLADELGCFEVNLFKDGRWE 330          
BLAST of mRNA_E-fasciculatus_F_contig14116.3014.1 vs. uniprot
Match: A0A5B8MKZ2_9CHLO (Calpain-type cysteine proteinase n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MKZ2_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 1.060e-7
Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    7 KGAVGDCWFLAGLAVVSERADLIGRVVGSNGPLA--DELGCFEVNLFKDGRWE 159
            +GAVGDCWFL+GLAV++ER DL+ R+     P+   ++ G +E   + DG+WE
Sbjct:  242 QGAVGDCWFLSGLAVIAERKDLVERIF----PVTQRNDEGVYECKFYIDGQWE 290          
BLAST of mRNA_E-fasciculatus_F_contig14116.3014.1 vs. uniprot
Match: A0A7R9UAM0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAM0_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.460e-7
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 1
Query:    1 LPKGAVGDCWFLAGLAVVSERADLIGRVVGSNGPLADELGCFEVNLFKDGRWE 159
            + +G VGDCWFLA LA +SER DL+  +V +     +  G +++ LF DGRW+
Sbjct:  162 IQQGKVGDCWFLAALATISERRDLLENLVVTRE--VNAAGIYQIRLFIDGRWQ 212          
BLAST of mRNA_E-fasciculatus_F_contig14116.3014.1 vs. uniprot
Match: UPI00106A7332 (calpain-15-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A7332)

HSP 1 Score: 50.8 bits (120), Expect = 6.260e-6
Identity = 21/50 (42.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    7 KGAVGDCWFLAGLAVVSERADLIGRVVGSNGPLADELGCFEVNLFKDGRW 156
            +G +GDCW L+ LAV++ER +L+ +++ +   + DE G +++ L KDGRW
Sbjct:  352 QGVLGDCWLLSALAVLTERPNLLEKIIVTR-KICDE-GAYQIRLCKDGRW 399          
BLAST of mRNA_E-fasciculatus_F_contig14116.3014.1 vs. uniprot
Match: UPI001F0412CA (calpain-15-like isoform X1 n=2 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F0412CA)

HSP 1 Score: 50.4 bits (119), Expect = 8.540e-6
Identity = 21/50 (42.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:    7 KGAVGDCWFLAGLAVVSERADLIGRVVGSNGPLADELGCFEVNLFKDGRW 156
            +G +GDCW L+ LAV++ER +LI +++ +    A+  G +++ L KDGRW
Sbjct:  354 QGVLGDCWLLSALAVLTERPNLIQKIIITRELCAE--GAYQIRLCKDGRW 401          
BLAST of mRNA_E-fasciculatus_F_contig14116.3014.1 vs. uniprot
Match: A0A1D2MY43_ORCCI (Calpain-D n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2MY43_ORCCI)

HSP 1 Score: 49.3 bits (116), Expect = 2.190e-5
Identity = 20/49 (40.82%), Postives = 33/49 (67.35%), Query Frame = 1
Query:   10 GAVGDCWFLAGLAVVSERADLIGRVVGSNGPLADELGCFEVNLFKDGRW 156
            GA+G+CWF+A LA++ ER +L+ +++ +     +  G + V LFKDG W
Sbjct:  150 GALGNCWFVAALALLCERKELLAKILATG--QINAAGVYIVRLFKDGNW 196          
BLAST of mRNA_E-fasciculatus_F_contig14116.3014.1 vs. uniprot
Match: UPI001458E140 (calpain-B-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458E140)

HSP 1 Score: 49.3 bits (116), Expect = 2.190e-5
Identity = 24/53 (45.28%), Postives = 32/53 (60.38%), Query Frame = 1
Query:    1 LPKGAVGDCWFLAGLAVVSERADLIGRVVGSNGPL-ADELGCFEVNLFKDGRW 156
            L +G++GDCWF+AG AVV+    LI RVV S+     D  G F  N +  G+W
Sbjct:   77 LDQGSLGDCWFIAGAAVVATHGKLIERVVPSDQDFDVDYAGIFHFNFWWYGKW 129          
BLAST of mRNA_E-fasciculatus_F_contig14116.3014.1 vs. uniprot
Match: A0A0B7JWG9_BIOOC (Calpain catalytic domain-containing protein n=2 Tax=Bionectria ochroleuca TaxID=29856 RepID=A0A0B7JWG9_BIOOC)

HSP 1 Score: 48.5 bits (114), Expect = 4.100e-5
Identity = 20/52 (38.46%), Postives = 32/52 (61.54%), Query Frame = 1
Query:    1 LPKGAVGDCWFLAGLAVVSERADLIGRVVGSNGPLADELGCFEVNLFKDGRW 156
            + +GA+GDCW+LAGL  ++ R DL+ +V  +     +E G +    F+DG W
Sbjct:  139 IAQGALGDCWWLAGLGTIAHRKDLMDKVCVARN---EECGVYGFVFFRDGEW 187          
BLAST of mRNA_E-fasciculatus_F_contig14116.3014.1 vs. uniprot
Match: A0A6J8B1U3_MYTCO (CAPN15 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8B1U3_MYTCO)

HSP 1 Score: 48.5 bits (114), Expect = 4.110e-5
Identity = 22/51 (43.14%), Postives = 33/51 (64.71%), Query Frame = 1
Query:    7 KGAVGDCWFLAGLAVVSERADLIGRVVGSNGPLADELGCFEVNLFKDGRWE 159
            +G +G+CWF+  LAVVSER +L+ R+V +     +  G + V L KDG W+
Sbjct:  320 QGEIGNCWFICALAVVSERKNLVERIVVTKDYCPE--GAYVVRLCKDGIWK 368          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14116.3014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FTW8_ECTSI6.810e-2798.04Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A5B8MKZ2_9CHLO1.060e-747.17Calpain-type cysteine proteinase n=2 Tax=Chloropic... [more]
A0A7R9UAM0_9STRA1.460e-745.28Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
UPI00106A73326.260e-642.00calpain-15-like n=1 Tax=Dendronephthya gigantea Ta... [more]
UPI001F0412CA8.540e-642.00calpain-15-like isoform X1 n=2 Tax=Xenia sp. Carne... [more]
A0A1D2MY43_ORCCI2.190e-540.82Calpain-D n=1 Tax=Orchesella cincta TaxID=48709 Re... [more]
UPI001458E1402.190e-545.28calpain-B-like n=1 Tax=Pecten maximus TaxID=6579 R... [more]
A0A0B7JWG9_BIOOC4.100e-538.46Calpain catalytic domain-containing protein n=2 Ta... [more]
A0A6J8B1U3_MYTCO4.110e-543.14CAPN15 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14116contigE-fasciculatus_F_contig14116:2711..2869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue1.4e-22
Seed eggNOG ortholog2880.D7FTW8
KEGG koko:K08582
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927903.2590332-CDS-E-fasciculatus_F_contig14116:2710..28691622927903.2590332-CDS-E-fasciculatus_F_contig14116:2710..2869Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14116 2711..2869 +
1695995745.2463772-CDS-E-fasciculatus_F_contig14116:2710..28691695995745.2463772-CDS-E-fasciculatus_F_contig14116:2710..2869Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14116 2711..2869 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14116.3014.1prot_E-fasciculatus_F_contig14116.3014.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14116 2711..2869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14116.3014.1

>prot_E-fasciculatus_F_contig14116.3014.1 ID=prot_E-fasciculatus_F_contig14116.3014.1|Name=mRNA_E-fasciculatus_F_contig14116.3014.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=53bp
LPKGAVGDCWFLAGLAVVSERADLIGRVVGSNGPLADELGCFEVNLFKDG
RWE
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mRNA from alignment at E-fasciculatus_F_contig14116:2711..2869+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14116.3014.1 ID=mRNA_E-fasciculatus_F_contig14116.3014.1|Name=mRNA_E-fasciculatus_F_contig14116.3014.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=159bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14116:2711..2869+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTCCCAAGGGGGCGGTGGGAGACTGTTGGTTCCTGGCTGGACTCGCGGT AGTGTCGGAACGTGCCGACCTGATTGGGCGGGTGGTGGGCAGCAATGGTC CTCTGGCTGACGAGTTGGGGTGCTTCGAAGTCAACCTCTTCAAGGACGGG CGCTGGGAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14116:2711..2869+

>mRNA_E-fasciculatus_F_contig14116.3014.1 ID=mRNA_E-fasciculatus_F_contig14116.3014.1|Name=mRNA_E-fasciculatus_F_contig14116.3014.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=318bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14116:2711..2869+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTCCCAAGGGGGCGGTGGGAGACTGTTGGTTCCTGGCTGGACTCGCGGT
AGTGTCGGAACGTGCCGACCTGATTGGGCGGGTGGTGGGCAGCAATGGTC
CTCTGGCTGACGAGTTGGGGTGCTTCGAAGTCAACCTCTTCAAGGACGGG
CGCTGGGAACTTCCCAAGGGGGCGGTGGGAGACTGTTGGTTCCTGGCTGG
ACTCGCGGTAGTGTCGGAACGTGCCGACCTGATTGGGCGGGTGGTGGGCA
GCAATGGTCCTCTGGCTGACGAGTTGGGGTGCTTCGAAGTCAACCTCTTC
AAGGACGGGCGCTGGGAA
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