mRNA_E-fasciculatus_F_contig14112.3012.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14112.3012.1
Unique NamemRNA_E-fasciculatus_F_contig14112.3012.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14112.3012.1 vs. uniprot
Match: D8LBX4_ECTSI (Lipoxygenase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX4_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 2.100e-43
Identity = 69/78 (88.46%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    1 TPIFTPEDGNNWLIAKACFESADFIIHEVVSHLGNTHVVLEAPMVAMNRCLPKEHPVYDLLKPHTEGTAIINWGAQNV 234
            TPIFTPEDGNNWLIAKACFESADFI+HEVVSHLG+TH+VLE PMVA+NRCLPKEHPVYDLLKPH EGTA+INWGAQ++
Sbjct:  303 TPIFTPEDGNNWLIAKACFESADFIMHEVVSHLGSTHIVLEGPMVAVNRCLPKEHPVYDLLKPHMEGTALINWGAQDL 380
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BLAST of mRNA_E-fasciculatus_F_contig14112.3012.1 vs. uniprot
Match: A0A6H5K920_9PHAE (Lipoxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K920_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.640e-35
Identity = 61/78 (78.21%), Postives = 67/78 (85.90%), Query Frame = 1 
Query:    1 TPIFTPEDGNNWLIAKACFESADFIIHEVVSHLGNTHVVLEAPMVAMNRCLPKEHPVYDLLKPHTEGTAIINWGAQNV 234
            TPIFTP+DG NW IAKACFE+ADFIIHEVVSHL NTHVVLE PMV+MNR LPKEHPV+ L  PH EGTA+INWGA  +
Sbjct:  327 TPIFTPDDGYNWKIAKACFEAADFIIHEVVSHLSNTHVVLEGPMVSMNRQLPKEHPVHALFAPHVEGTALINWGADEL 404
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BLAST of mRNA_E-fasciculatus_F_contig14112.3012.1 vs. uniprot
Match: A0A6H5KD72_9PHAE (Lipoxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD72_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 4.170e-35
Identity = 58/78 (74.36%), Postives = 68/78 (87.18%), Query Frame = 1 
Query:    1 TPIFTPEDGNNWLIAKACFESADFIIHEVVSHLGNTHVVLEAPMVAMNRCLPKEHPVYDLLKPHTEGTAIINWGAQNV 234
            TPIFTP+DG NW IAKACFE+ADF+IH+VVSHLGNTH+VLEAPMV+M R LPKEHP++ L  PH EGTA+INWGA  +
Sbjct:  255 TPIFTPDDGYNWKIAKACFEAADFVIHQVVSHLGNTHIVLEAPMVSMYRQLPKEHPIHALFAPHVEGTALINWGADEL 332
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BLAST of mRNA_E-fasciculatus_F_contig14112.3012.1 vs. uniprot
Match: A0A1C0VNU0_9NOSO (Lipoxygenase domain-containing protein n=4 Tax=Nostoc TaxID=1177 RepID=A0A1C0VNU0_9NOSO)

HSP 1 Score: 90.9 bits (224), Expect = 1.410e-19
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:    1 TPIFTPEDGNNWLIAKACFESADFIIHEVVSHLGNTHVVLEAPMVAMNRCLPKEHPVYDLLKPHTEGTAIINWGA 225
            +P+FTP  G NWL+AK+  + AD   HE+VSHLG TH+ +E   +A  R LPK HP+  LL+PH EGT +IN+GA
Sbjct:  381 SPVFTPLSGENWLVAKSVVQMADVNYHELVSHLGRTHLFIEPFAIATRRQLPKNHPLRILLEPHLEGTILINYGA 455
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BLAST of mRNA_E-fasciculatus_F_contig14112.3012.1 vs. uniprot
Match: UPI001682E960 (lipoxygenase n=1 Tax=Nostoc parmelioides TaxID=1521621 RepID=UPI001682E960)

HSP 1 Score: 88.2 bits (217), Expect = 1.250e-18
Identity = 40/74 (54.05%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    4 PIFTPEDGNNWLIAKACFESADFIIHEVVSHLGNTHVVLEAPMVAMNRCLPKEHPVYDLLKPHTEGTAIINWGA 225
            PIFTP DG NW+ AK   + AD   HE+ SHL  TH+ +E  ++A NRC  K H V  LLKPH EGT +IN+GA
Sbjct:  368 PIFTPLDGENWMTAKTVLQMADSNYHELFSHLAQTHLFIEPFVLATNRCFDKSHAVRLLLKPHLEGTVLINYGA 441
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BLAST of mRNA_E-fasciculatus_F_contig14112.3012.1 vs. uniprot
Match: A0A1U7HSE0_9NOSO (Lipoxygenase domain-containing protein n=2 Tax=Nostoc TaxID=1177 RepID=A0A1U7HSE0_9NOSO)

HSP 1 Score: 87.4 bits (215), Expect = 2.320e-18
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:    4 PIFTPEDGNNWLIAKACFESADFIIHEVVSHLGNTHVVLEAPMVAMNRCLPKEHPVYDLLKPHTEGTAIINWGAQNV 234
            P+FTP DG NW IAK+  + AD   HE+VSHLG TH+ +E  ++A  R LP +H +  LL+PH EGT +IN+GA  V
Sbjct:  350 PVFTPLDGENWTIAKSIVQMADSNYHELVSHLGRTHLFIEPFVIATKRRLPTKHHLRILLEPHFEGTILINYGAHKV 426
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BLAST of mRNA_E-fasciculatus_F_contig14112.3012.1 vs. uniprot
Match: A0A6P2A0G9_9CYAN (Lipoxygenase n=1 Tax=Nodularia sp. (in: Bacteria) TaxID=2047085 RepID=A0A6P2A0G9_9CYAN)

HSP 1 Score: 86.7 bits (213), Expect = 4.330e-18
Identity = 39/74 (52.70%), Postives = 50/74 (67.57%), Query Frame = 1 
Query:    4 PIFTPEDGNNWLIAKACFESADFIIHEVVSHLGNTHVVLEAPMVAMNRCLPKEHPVYDLLKPHTEGTAIINWGA 225
            PIFTP DG NW+ AK   + AD   HE++SHL  TH+ +E  ++A NRC   +H V  LLKPH EGT +IN+GA
Sbjct:  367 PIFTPLDGENWMTAKTVLQMADSNYHELISHLAQTHLFIEPFVLATNRCFQPDHFVRLLLKPHLEGTILINYGA 440
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BLAST of mRNA_E-fasciculatus_F_contig14112.3012.1 vs. uniprot
Match: A0A1Z4KXJ1_NOSLI (Lipoxygenase n=1 Tax=Nostoc linckia NIES-25 TaxID=1091006 RepID=A0A1Z4KXJ1_NOSLI)

HSP 1 Score: 86.7 bits (213), Expect = 4.340e-18
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:    4 PIFTPEDGNNWLIAKACFESADFIIHEVVSHLGNTHVVLEAPMVAMNRCLPKEHPVYDLLKPHTEGTAIINWGAQNV 234
            P+FTP DG NW IAK+  + AD   HE+VSHLG TH+ +E  ++A  R LP  H +  LL+PH EGT +IN+GA  +
Sbjct:  387 PVFTPLDGENWAIAKSIVQMADSNYHELVSHLGRTHLFIEPFVIATKRRLPANHHLRILLEPHFEGTILINYGAHKI 463
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14112.3012.1 vs. uniprot
Match: A0A2C6W0A5_NOSLI (Lipoxygenase domain-containing protein n=5 Tax=Nostoc TaxID=1177 RepID=A0A2C6W0A5_NOSLI)

HSP 1 Score: 85.9 bits (211), Expect = 8.070e-18
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:    4 PIFTPEDGNNWLIAKACFESADFIIHEVVSHLGNTHVVLEAPMVAMNRCLPKEHPVYDLLKPHTEGTAIINWGAQNV 234
            P+FTP DG NW IAK+  + AD   HE+VSHLG TH+ +E  ++A  R LP  H +  LL+PH EGT +IN+GA  +
Sbjct:  349 PVFTPLDGENWAIAKSIVQMADSNYHELVSHLGRTHLFIEPFVIATKRRLPANHHLRILLEPHFEGTILINYGAHQL 425
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14112.3012.1 vs. uniprot
Match: A0A367QVZ4_9NOSO (Lipoxygenase domain-containing protein n=4 Tax=Nostoc TaxID=1177 RepID=A0A367QVZ4_9NOSO)

HSP 1 Score: 85.9 bits (211), Expect = 8.080e-18
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:    4 PIFTPEDGNNWLIAKACFESADFIIHEVVSHLGNTHVVLEAPMVAMNRCLPKEHPVYDLLKPHTEGTAIINWGAQNV 234
            P+FTP DG NW IAK+  + AD   HE+VSHLG TH+ +E  ++A  R LP  H +  LL+PH EGT +IN+GA  +
Sbjct:  388 PVFTPLDGENWAIAKSIVQMADSNYHELVSHLGRTHLFIEPFVIATKRRLPANHHLRILLEPHFEGTILINYGAHQL 464
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14112.3012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBX4_ECTSI2.100e-4388.46Lipoxygenase n=2 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5K920_9PHAE1.640e-3578.21Lipoxygenase domain-containing protein n=2 Tax=Ect... [more]
A0A6H5KD72_9PHAE4.170e-3574.36Lipoxygenase domain-containing protein n=2 Tax=Ect... [more]
A0A1C0VNU0_9NOSO1.410e-1953.33Lipoxygenase domain-containing protein n=4 Tax=Nos... [more]
UPI001682E9601.250e-1854.05lipoxygenase n=1 Tax=Nostoc parmelioides TaxID=152... [more]
A0A1U7HSE0_9NOSO2.320e-1851.95Lipoxygenase domain-containing protein n=2 Tax=Nos... [more]
A0A6P2A0G9_9CYAN4.330e-1852.70Lipoxygenase n=1 Tax=Nodularia sp. (in: Bacteria) ... [more]
A0A1Z4KXJ1_NOSLI4.340e-1850.65Lipoxygenase n=1 Tax=Nostoc linckia NIES-25 TaxID=... [more]
A0A2C6W0A5_NOSLI8.070e-1850.65Lipoxygenase domain-containing protein n=5 Tax=Nos... [more]
A0A367QVZ4_9NOSO8.080e-1850.65Lipoxygenase domain-containing protein n=4 Tax=Nos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14112contigE-fasciculatus_F_contig14112:429..1101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.5
Seed ortholog evalue2.5e-36
Seed eggNOG ortholog2880.D8LBX4
KEGG rclassRC00561,RC00839,RC02139
KEGG koko:K00461
KEGG ReactionR01595,R03058,R08527
KEGG Pathwayko00590,ko01100,ko04664,ko04726,ko04913,ko05145,map00590,map01100,map04664,map04726,map04913,map05145
EggNOG free text desc.oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
EggNOG OGs28IFU@1,2QQSP@2759
EC1.13.11.34
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927903.1189852-CDS-E-fasciculatus_F_contig14112:428..5021622927903.1189852-CDS-E-fasciculatus_F_contig14112:428..502Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14112 429..502 +
1695995745.1827679-CDS-E-fasciculatus_F_contig14112:428..5021695995745.1827679-CDS-E-fasciculatus_F_contig14112:428..502Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14112 429..502 +
1622927903.1349807-CDS-E-fasciculatus_F_contig14112:941..11011622927903.1349807-CDS-E-fasciculatus_F_contig14112:941..1101Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14112 942..1101 +
1695995745.1934452-CDS-E-fasciculatus_F_contig14112:941..11011695995745.1934452-CDS-E-fasciculatus_F_contig14112:941..1101Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14112 942..1101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14112.3012.1prot_E-fasciculatus_F_contig14112.3012.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14112 429..1101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14112.3012.1

>prot_E-fasciculatus_F_contig14112.3012.1 ID=prot_E-fasciculatus_F_contig14112.3012.1|Name=mRNA_E-fasciculatus_F_contig14112.3012.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=78bp
TPIFTPEDGNNWLIAKACFESADFIIHEVVSHLGNTHVVLEAPMVAMNRC
LPKEHPVYDLLKPHTEGTAIINWGAQNV
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mRNA from alignment at E-fasciculatus_F_contig14112:429..1101+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14112.3012.1 ID=mRNA_E-fasciculatus_F_contig14112.3012.1|Name=mRNA_E-fasciculatus_F_contig14112.3012.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=673bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14112:429..1101+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACCCCGATCTTTACCCCCGAGGACGGTAACAACTGGCTCATTGCCAAGGC
ATGCTTCGAGTCTGCCGATTTCATGTAAGGTCGCTTTCGGAGACTCGTAC
GCGTACAACGTGTTGTGGGTCGGGAAACCGCCCTCCCCCCGTTCATGCAT
CTTGACTTGCAAAAAAAATACACACGAAAAACTTCTCTTTGCCGTATGCT
CGCTGAAAACACACAAAAACAATATTGGAATCAGGGTATACGCGAGGTTT
CTGCTGGCACCACAGGTATCGCATAAGGACCTCACAAACCCCTGAGCCCC
GTTCGCGCCTTTCCTCCCTGCCACTTTTTGCGTCGACGCAGAAGAGTTCT
CCGGCAGTCAAATCTCTTCCCATGGTTCCAATCTTCATAGCTCTCCTCCG
TGATCTTGGTTCGCCCGTATTTTTTCTTTGCTGTCTCCTTTGCATCAACG
CGTGTGTGTCGTCGTCCGTTCTAATCTGAACGTGTGTGCTTCTCTATGAT
TCTTCGTTTCCAGCATTCACGAGGTCGTGTCTCACCTCGGCAACACACAC
GTCGTGCTTGAGGCCCCCATGGTAGCCATGAACCGCTGCCTCCCCAAGGA
ACACCCTGTGTACGACCTCCTCAAGCCCCACACGGAGGGGACCGCCATCA
TCAACTGGGGAGCGCAGAACGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14112:429..1101+

>mRNA_E-fasciculatus_F_contig14112.3012.1 ID=mRNA_E-fasciculatus_F_contig14112.3012.1|Name=mRNA_E-fasciculatus_F_contig14112.3012.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=468bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14112:429..1101+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACCCCGATCTTTACCCCCGAGGACGGTAACAACTGGCTCATTGCCAAGGC
ATGCTTCGAGTCTGCCGATTTCATACCCCGATCTTTACCCCCGAGGACGG
TAACAACTGGCTCATTGCCAAGGCATGCTTCGAGTCTGCCGATTTCATCA
TTCACGAGGTCGTGTCTCACCTCGGCAACACACACGTCGTGCTTGAGGCC
CCCATGGTAGCCATGAACCGCTGCCTCCCCAAGGAACACCCTGTGTACGA
CCTCCTCAAGCCCCACACGGAGGGGACCGCCATCATCAACTGGGGAGCGC
AGAACGTGCATTCACGAGGTCGTGTCTCACCTCGGCAACACACACGTCGT
GCTTGAGGCCCCCATGGTAGCCATGAACCGCTGCCTCCCCAAGGAACACC
CTGTGTACGACCTCCTCAAGCCCCACACGGAGGGGACCGCCATCATCAAC
TGGGGAGCGCAGAACGTG
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