mRNA_E-fasciculatus_F_contig1411.3010.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1411.3010.1 vs. uniprot
Match: A0A6H5L3N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3N7_9PHAE) HSP 1 Score: 503 bits (1294), Expect = 1.080e-171 Identity = 259/308 (84.09%), Postives = 270/308 (87.66%), Query Frame = 3
Query: 15 MPSRQQGMVDFKMLVPLGLAAAVLLTTSEAFFSSAGRLGASSQRHLLLPSCAGRHGGVALDKVAKMVNAT---------------ALPNALQARGGKISGSSV---IVAEDKGKGARRRLSVAWGRYLGALNDQPLLTKALSSGVVSGTANVIEQTLSAAKFDWGGWVVFSLTGIVFKGMFLHYWYNILDRLGNSKVVTSRVPGKWGRVSFQVMVDTIIGATLLNCGYFAVHEIFSAITTGRVFPLPGLGSRIVEKISSRYSVMMVANCRVWPPVVFLNFAFVPPDLRVLVSNFVAVFWGYLLSKWCR 884
MPSR+ GMVDFKMLVPLGL A VL T SEAFF+SAGRL ASSQRHLLLPSCAGRH G ALD VAKM N T ALPNALQ RGG IS SS +VAEDKG+ ARRRLSV WGRYLGALNDQPLLTKALSSGVVSGTAN+IEQTLSAAKF+W GWVVFSLTGIVFKGMFLHYWYNILDRLGN+K VTSRVPGKWGRVSFQV+VDTIIGATLLNCGYFAVHEIFS+ITTGR+FPLPGLG RIVEKI+SRYSVMMVANCRVWPPVVFLNFAFVPPDLRVLVSNFVAVFWGYLLSKWCR
Sbjct: 15 MPSRR-GMVDFKMLVPLGLTALVLSTASEAFFTSAGRLRASSQRHLLLPSCAGRHRGAALDTVAKMANVTVGDCVDPMLPCASRVALPNALQTRGGTISSSSSNSSVVAEDKGRSARRRLSVVWGRYLGALNDQPLLTKALSSGVVSGTANIIEQTLSAAKFNWEGWVVFSLTGIVFKGMFLHYWYNILDRLGNAKAVTSRVPGKWGRVSFQVLVDTIIGATLLNCGYFAVHEIFSSITTGRLFPLPGLGLRIVEKIASRYSVMMVANCRVWPPVVFLNFAFVPPDLRVLVSNFVAVFWGYLLSKWCR 321
BLAST of mRNA_E-fasciculatus_F_contig1411.3010.1 vs. uniprot
Match: D7FZH5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH5_ECTSI) HSP 1 Score: 369 bits (947), Expect = 3.360e-120 Identity = 192/254 (75.59%), Postives = 198/254 (77.95%), Query Frame = 3
Query: 201 VAKMVNATALPNALQARGGKISGSSVIVAEDKGKGA--RRRLSVAWGRYLGALNDQPLLTKALSSGVVSGTANVIEQTLSAAKFDWGGWVVFSLTGIVFKGMFLHYWYNILDRL------------------------GNSKVVTSRVPGKWGRVSFQVMVDTIIGATLLNCGYFAVHEIFSAITTGRVFPLPGLGSRIVEKISSRYSVMMVANCRVWPPVVFLNFAFVPPDLRVLVSNFVAVFWGYLLSKWCR 884
VA + TALP ALQ RGG I RRR SV WGRYL ALNDQPLLTKALSSGVVSGTAN+IEQTLSAAKFDWGGWVVFSLTGIVFKGMFLHYWYNILDR GN+K VTSRVPGKWGRVSFQ MVDTIIGATLLNCGYFAVHEIFSAITTGR+FPLP LG RIV+KI+SRYSVMMVANCRVWPPVVFLNFAFVPPDLRVLVSNFVAVFWGYLLSKWCR
Sbjct: 18 VAVRASRTALPKALQTRGGTIISXXXXXXXXXXXXXXXRRRFSVVWGRYLNALNDQPLLTKALSSGVVSGTANIIEQTLSAAKFDWGGWVVFSLTGIVFKGMFLHYWYNILDRALACCTRWPSLPLLLRGVKSHGQVEGNAKGVTSRVPGKWGRVSFQGMVDTIIGATLLNCGYFAVHEIFSAITTGRLFPLPELGLRIVKKIASRYSVMMVANCRVWPPVVFLNFAFVPPDLRVLVSNFVAVFWGYLLSKWCR 271
BLAST of mRNA_E-fasciculatus_F_contig1411.3010.1 vs. uniprot
Match: D7FZH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZH3_ECTSI) HSP 1 Score: 279 bits (713), Expect = 4.430e-85 Identity = 160/289 (55.36%), Postives = 194/289 (67.13%), Query Frame = 3
Query: 36 MVDFKMLVPLGLAA-AVLLTTSEAFFSSAG--RLGASSQRHLLLPSCAGRHGGVALDKV-AKMVNAT-ALP-NALQARGGKISGSSVIVAEDKGKGARRRLSVAWGRYLGALNDQPLLTKALSSGVVSGTANVIEQTLSAAKFDWGGWVVFSLTGIVFKGMFLHYWYNILDRLGNSKVVTSRVPGKWGRVSFQVMVDTIIGATLLNCGYFAVHEIFSAITTGRVFPLPGLGSRIVEKISSRYSVMMVANCRVWPPVVFLNFAFVPPDLRVLVSNFVAVFWGYLLSKWCR 884
M +M + + L+A A TT +A SSAG R RH L +G H AL KV M NA ALP +A + + G SG V ED GK R +S WGRYL AL ++PLLTK+LSSGV+SGTAN+IEQTLS A F W F+L G VF G LH+WY L+R+GNS+V+TSR+ KWGRV QV++D IGA+L+N GYFA H + A TGR FPLP LGS IVEK++SRY VMM+ N R+WP V F+NFAF+P DLRVLVSNFVAV WGYL+SKWCR
Sbjct: 4 MSALRMCLLVALSALAFSTTTGDALVSSAGAGRWSGGHCRHHLQSRSSGWHRAAALGKVETTMTNAAEALPADASRFQAGGASGGGV---EDAGKIKGRGVSRMWGRYLHALENRPLLTKSLSSGVISGTANLIEQTLSPAAFSLVDWSAFTLVGAVFIGTVLHHWYGFLERMGNSEVITSRIKSKWGRVVLQVVLDQTIGASLVNSGYFACHTVCLAGLTGRAFPLPELGSSIVEKVTSRYVVMMMNNFRLWPWVSFVNFAFIPADLRVLVSNFVAVLWGYLMSKWCR 289
BLAST of mRNA_E-fasciculatus_F_contig1411.3010.1 vs. uniprot
Match: A0A835YMP8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP8_9STRA) HSP 1 Score: 150 bits (379), Expect = 2.230e-37 Identity = 80/198 (40.40%), Postives = 112/198 (56.57%), Query Frame = 3
Query: 300 KGARRRLSVAWGRYLGALNDQPLLTKALSSGVVSGTANVIEQTLSAAK------FDWGGWVVFSLTGIVFKGMFLHYWYNILDRLGNSKVVT-SRVPGKWGRVSFQVMVDTIIGATLLNCGYFAVHEIFSAITTGRVFPLPGLGSRIVEKISSRYSVMMVANCRVWPPVVFLNFAFVPPDLRVLVSNFVAVFWGYLLS 872
+GA ++L W +YLG L+ +PL+TKA +S ++ + I Q L A FD ++ + +HYWYN LD+ KV + V GKW RV Q+ VD +G T+LN G++ VH I SA+ GRVFPL L I K+S M++ N ++WP F+NF+ VPP LRVL +NFVA+FW LS
Sbjct: 69 RGAPQQL---WNKYLGQLDRRPLITKAWTSTIIGCIGDTIAQVLEARTKGIPFVFDTQRTAIYIFCAVAIGSTAVHYWYNFLDQ----KVANPNTVKGKWNRVFRQLAVDQTVGCTVLNAGFYIVHTIVSAVVMGRVFPLGALADTITGKLSREMWPMLINNWKLWPAANFINFSLVPPQLRVLFANFVAIFWNIYLS 259
BLAST of mRNA_E-fasciculatus_F_contig1411.3010.1 vs. uniprot
Match: PX24B_DICDI (PXMP2/4 family protein 2 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=PX24B_DICDI) HSP 1 Score: 96.3 bits (238), Expect = 3.880e-19 Identity = 59/190 (31.05%), Postives = 92/190 (48.42%), Query Frame = 3
Query: 330 WGRYLGALNDQPLLTKALSSGVVSGTANVIEQTL--------SAAKFDWGGWVVFSLTGIVFKGMFLHYWYNILDRLGNSKVVTSRVPGKWGRVSFQVM-VDTIIGATLLNCGYFAVHEIFSAITTGRVFPLPGLGSRIVEKISSRYSVMMVANCRVWPPVVFLNFAFVPPDLRVLVSNFVAVFWGYLLS 872
WG YLG L++ PL+TK+LS+G + GT +++ Q L S K D+ S GI + G LHYWY LD + V G+ V + M +D ++ A + G+ V + G + + +E + + N +WP +NF+ VPP+LRVL S+ +++FWG LS
Sbjct: 5 WGLYLGLLDNHPLVTKSLSTGFLMGTGDILAQRLEHKFKDEKSQFKLDYKRVATMSTVGIFYSGPMLHYWYRSLDIM---------VKGEGRSVIIKKMLIDQLLFAPVAIGGFMTVTNFIN--NKGEL--------KNLENFTKELFYAVKINWLIWPAAQIINFSLVPPNLRVLYSSIISIFWGMFLS 175
BLAST of mRNA_E-fasciculatus_F_contig1411.3010.1 vs. uniprot
Match: A0A1Y1IBF0_KLENI (Mpv17 / PMP22 family domain containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IBF0_KLENI) HSP 1 Score: 90.9 bits (224), Expect = 2.370e-17 Identity = 57/182 (31.32%), Postives = 96/182 (52.75%), Query Frame = 3
Query: 318 LSVAWGRYLGALNDQPLLTKALSSGVVSGTANVIEQTLSAAK-FDWGGWVVFSLTGIVFKGMFLHYWYNILDRLGNSKVVTSRVPGKWGRVSFQVMVDTIIGATLLNCGYFAVHEIFSAITTGRVFPLPGLGSRIVE-KISSRYSVMMVANCRVWPPVVFLNFAFVPPDLRVLVSNFVAVFW 857
L VAW RYL +L +PL+TKA++SG ++ A+V+ Q + AK + ++ G+ F G H+++ I+DR+ +K S V K V+V+ + + N AI T R + + GL + K+ Y + ++WP V F+N++F+PP LRVL +N +++FW
Sbjct: 5 LVVAWQRYLHSLGKRPLITKAITSGTLAAVADVLAQKMGGAKHLQPKKSALMAVYGLCFGGPTYHFFHKIMDRVFGAKTDPSTVIQK-------VVVEQLTFGVMYNL----------AILTYRAYVVEGLTWAATKAKVRRDYWGVQKQGWKLWPLVAFINYSFLPPQLRVLFANVLSIFW 169
BLAST of mRNA_E-fasciculatus_F_contig1411.3010.1 vs. uniprot
Match: A0A7M3QA12_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3QA12_SPIER) HSP 1 Score: 95.9 bits (237), Expect = 2.510e-17 Identity = 64/190 (33.68%), Postives = 93/190 (48.95%), Query Frame = 3
Query: 327 AWGRYLGALNDQPLLTKALSSGVVSGTANVIEQTLSAAKFDWGG--WVVFSLTGIVFKGMFLHYWYNILDRL--GNSKVVTSRVPGKWGRVSFQVMVDTIIGATLLNCGYFAVHEIFSAITTGRVFPLPGLGSRIVEKISSRYSVMMVANCRVWPPVVFLNFAFVPPDLRVLVSNFVAVFWGYLLSKWCR 884
AW YL L+ PL T+ +S+ ++ T ++I Q + + ++ + F + G+ F G H WYN +DRL G + T ++ + MV +IIG L + ++ E TG +S+ Y M+ N RVWPPV F+NF FVP LRVLV NFVA+FW LS R
Sbjct: 49 AWSGYLHLLSKYPLRTQCVSTALIMSTGDIIAQKIVERQPNYSPSRTLKFGMIGMCFVGPTFHCWYNFIDRLYTGTKLIRTVKMVASDQLIMAPCMVFSIIGLVGLTKNW-SIEE----AKTG---------------LSNNYIQAMLMNIRVWPPVQFINFTFVPLHLRVLVVNFVALFWNTYLSYKAR 218
BLAST of mRNA_E-fasciculatus_F_contig1411.3010.1 vs. uniprot
Match: A0A8J5FSH3_ZINOF (Uncharacterized protein n=3 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FSH3_ZINOF) HSP 1 Score: 93.2 bits (230), Expect = 3.900e-17 Identity = 59/178 (33.15%), Postives = 91/178 (51.12%), Query Frame = 3
Query: 339 YLGALNDQPLLTKALSSGVVSGTANVIEQTLSAAKFDWGGWVVFSLTGIVFKGMFLHYWYNILDRLGNSKVVTSRVPGKWGRVSFQVMVDTIIGATLLNCGYFAVHEIFSAITTGRVFPLPGLGSRIVEKISSRYSVMMVANCRVWPPVVFLNFAFVPPDLRVLVSNFVAVFWGYLLS 872
YL AL+ P++TKA++S +++ ++I Q L K DW +VF+ G+V G L +WY L +L V S G + R+ ++D F IF + V L G S+I K+ + ++AN ++W P FLNF FVP + +VL +NFVA+ W +LS
Sbjct: 132 YLTALDKHPVITKAITSALLTLVGDLICQVL---KLDWKRTIVFTFLGLVLVGPTLQFWYLYLSKL----VTLSGASGAFSRL----LLDQ-----------FIFSPIFIGVFLSSVVALEGRPSQIKLKLQQEWFSAVIANWQLWLPFQFLNFRFVPQNFQVLAANFVALAWNVILS 287
BLAST of mRNA_E-fasciculatus_F_contig1411.3010.1 vs. uniprot
Match: A0A7J8U408_9ROSI (Uncharacterized protein n=1 Tax=Gossypium klotzschianum TaxID=34286 RepID=A0A7J8U408_9ROSI) HSP 1 Score: 89.4 bits (220), Expect = 9.610e-17 Identity = 56/187 (29.95%), Postives = 92/187 (49.20%), Query Frame = 3
Query: 318 LSVAWGRYLGALNDQPLLTKALSSGVVSGTANVIEQTL--SAAKFDWGGWVVFSLTGIVFKGMFLHYWYNILDRLGNSKVVTSRVPGKWGRVSFQVMVDTIIGATLLNCGYFAVHEIFSAITTGRVFPLPGLGSRIVEKISSRYSVMMVANCRVWPPVVFLNFAFVPPDLRVLVSNFVAVFWGYLLS 872
L + RYL L P+LTKA++S +++ ++I Q A D +F+L G+V G LH+WY L L ++PG G + ++++D F IF + + L G S+++ K+ + ++AN ++W P FLNF FVP +VL +NF+A+ W +LS
Sbjct: 15 LCCLFNRYLALLAKHPVLTKAVTSALLTCVGDLICQLAIDHAPSLDVKRTFLFTLLGLVLVGPTLHFWYLCLSNL-------VKLPGASGAI-LRLLLDQ-----------FMFSPIFIGVFLSTLVTLEGKPSQVIPKLRQEWFSAVIANWQLWIPFQFLNFRFVPQQFQVLAANFIALVWNVILS 182
BLAST of mRNA_E-fasciculatus_F_contig1411.3010.1 vs. uniprot
Match: A0A0X3PLH9_SCHSO (Protein Mpv17 n=4 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0X3PLH9_SCHSO) HSP 1 Score: 89.0 bits (219), Expect = 1.050e-16 Identity = 61/190 (32.11%), Postives = 90/190 (47.37%), Query Frame = 3
Query: 327 AWGRYLGALNDQPLLTKALSSGVVSGTANVIEQTLSAAK--FDWGGWVVFSLTGIVFKGMFLHYWYNILDRL-GNSKVVTS-RVPGKWGRVSFQVMVDTIIGATLLNCGYFAVHEIFSAITTGRVFPLPGLGSRIVEKISSRYSVMMVANCRVWPPVVFLNFAFVPPDLRVLVSNFVAVFWGYLLSKWCR 884
AW YL L PL T+ +S+ ++ + ++I Q + + + + F + G+ F G HYWYN +DR+ +KVV S ++ + MV +IIG L + ++ E TG + Y M N R+WPP+ F+NF VP LRVLV NFVA+FW LS R
Sbjct: 9 AWSGYLRLLKKYPLQTQCISTAIIMSSGDIIAQKIVERQPTYSPSRTLKFGMIGMCFVGPTFHYWYNFIDRIYTGTKVVRSLKMVASDQFLMAPCMVFSIIGLVGLTKNW-SIDE----AKTG---------------LKDNYIRAMFMNIRIWPPIQFINFTVVPVHLRVLVVNFVALFWNTYLSYKAR 178 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1411.3010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1411.3010.1 >prot_E-fasciculatus_F_contig1411.3010.1 ID=prot_E-fasciculatus_F_contig1411.3010.1|Name=mRNA_E-fasciculatus_F_contig1411.3010.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=291bp MPSRQQGMVDFKMLVPLGLAAAVLLTTSEAFFSSAGRLGASSQRHLLLPSback to top mRNA from alignment at E-fasciculatus_F_contig1411:10666..18128+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1411.3010.1 ID=mRNA_E-fasciculatus_F_contig1411.3010.1|Name=mRNA_E-fasciculatus_F_contig1411.3010.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=7463bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1411:10666..18128+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1411:10666..18128+ >mRNA_E-fasciculatus_F_contig1411.3010.1 ID=mRNA_E-fasciculatus_F_contig1411.3010.1|Name=mRNA_E-fasciculatus_F_contig1411.3010.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1746bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1411:10666..18128+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |