mRNA_E-fasciculatus_F_contig14108.3008.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14108.3008.1
Unique NamemRNA_E-fasciculatus_F_contig14108.3008.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14108.3008.1 vs. uniprot
Match: D7G4E7_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E7_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 5.290e-61
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:   28 MSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 303
            MSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD
Sbjct:    1 MSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 92
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14108.3008.1 vs. uniprot
Match: A0A6H5K2P5_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P5_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 4.590e-59
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 1 
Query:    4 QVKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 303
            QVKWLARVMS+LDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD
Sbjct: 2259 QVKWLARVMSELDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 2358
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14108.3008.1 vs. uniprot
Match: A0A835Z7D6_9STRA (HECT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7D6_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.470e-34
Identity = 65/100 (65.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:    4 QVKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 303
            QV  L  V+S+LD   RR FL FVTG+PRLP+GGF AL+PRLTVV+K+        PD HLPSCSTCQVYLKLPAYT +A L AKL  AI EG++HFALD
Sbjct:  244 QVAALVEVLSELDAAQRRAFLSFVTGSPRLPLGGFAALQPRLTVVRKDTP-----RPDEHLPSCSTCQVYLKLPAYTCKAVLRAKLLQAINEGREHFALD 338
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14108.3008.1 vs. uniprot
Match: A0A2R5GSN0_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GSN0_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.390e-30
Identity = 60/100 (60.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:    4 QVKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 303
            Q++ L  V+S+LD   RR F++F+TG+PRLP+GGFG LRPRLTVV+K V       PD  LPSCSTCQVYLKLP Y+SR  L+ +L  A+ EGQ HFALD
Sbjct: 2699 QIRDLVHVLSELDGSDRRLFMQFLTGSPRLPVGGFGELRPRLTVVRKNV----ADDPDGILPSCSTCQVYLKLPPYSSREVLKRRLLQAVREGQGHFALD 2794
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14108.3008.1 vs. uniprot
Match: A0A7S1CCF7_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCF7_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.200e-25
Identity = 56/98 (57.14%), Postives = 69/98 (70.41%), Query Frame = 1 
Query:    7 VKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 300
            V+ L  V+SDLD   RRQFL F TG+PRLP+GGF AL PRLT+V+K+   LPG +PD+ LPS STC  YLKLP YTS+  +  +L  AIT+G   F L
Sbjct: 2026 VQMLVEVLSDLDPVLRRQFLLFTTGSPRLPVGGFNALLPRLTIVQKKP--LPGRSPDASLPSASTCTNYLKLPQYTSKEIMHERLVRAITDGAGAFHL 2121
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14108.3008.1 vs. uniprot
Match: A0A7S1G2E8_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G2E8_9STRA)

HSP 1 Score: 107 bits (267), Expect = 6.000e-25
Identity = 54/101 (53.47%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 PQVKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 303
            PQV+ L  +MS+  T+ RR FLRFVTG PRLP+GGF +LRP LT+VK      PG   D  +P+C  C VYLKLPAYT    L  KL  AI +GQ+ F +D
Sbjct: 2810 PQVQQLVSIMSEFTTQERRLFLRFVTGAPRLPMGGFASLRPPLTIVKTVPP--PGRIADEMMPTCMVCSVYLKLPAYTEPVVLRDKLHMAIRDGQESFEMD 2908
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14108.3008.1 vs. uniprot
Match: A0A482RGR4_9ARCH (HECT domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RGR4_9ARCH)

HSP 1 Score: 99.8 bits (247), Expect = 2.370e-24
Identity = 54/105 (51.43%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:    7 VKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVK------KEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 303
            V+ L  V+ +     RR F+RF+TG PRLP GGFGAL+P LT+V+      +E D L        LP+CSTC VYLKLPAY+S+  L AKL  AI EGQ+ FA D
Sbjct:   79 VRALLEVLHEFSAAERRLFMRFITGAPRLPSGGFGALQPPLTIVRTAAHDREEADAL--------LPTCSTCHVYLKLPAYSSKTQLRAKLLLAIREGQEVFAFD 175
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14108.3008.1 vs. uniprot
Match: A0A4P9ZF83_9ASCO (HECT-type E3 ubiquitin transferase n=1 Tax=Metschnikowia bicuspidata TaxID=27322 RepID=A0A4P9ZF83_9ASCO)

HSP 1 Score: 103 bits (257), Expect = 1.320e-23
Identity = 52/98 (53.06%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:    7 VKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 300
            +K L  ++SD     RRQFL+F+TG+PRLPIGGF AL P+LT+VKK VD   G   D HLPS  TC  YLK+P Y+ R  ++AK+  A+ EG D F L
Sbjct: 1300 IKHLLSIISDFSKVERRQFLQFLTGSPRLPIGGFAALNPKLTIVKKHVD--SGQKTDDHLPSVMTCANYLKMPDYSLRDIMKAKILQAMREGSDSFHL 1395
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14108.3008.1 vs. uniprot
Match: A0A814GCM7_9BILA (E3 ubiquitin-protein ligase n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814GCM7_9BILA)

HSP 1 Score: 103 bits (257), Expect = 1.340e-23
Identity = 53/98 (54.08%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:    7 VKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 300
            VKWL  +M D D + RR FL+FVTG+PRLP+GGF  L P LTVV+K V+      PD++LPS  TC  YLKLP YTS+  ++ KL  AI +GQ  F L
Sbjct: 2285 VKWLFEIMIDFDIDERRAFLQFVTGSPRLPVGGFRTLHPPLTVVRKTVE---NDNPDNYLPSVMTCVNYLKLPDYTSKDIMKTKLLTAIRDGQFAFLL 2379
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14108.3008.1 vs. uniprot
Match: Q5DF45_SCHJA (E3 ubiquitin-protein ligase n=1 Tax=Schistosoma japonicum TaxID=6182 RepID=Q5DF45_SCHJA)

HSP 1 Score: 99.4 bits (246), Expect = 1.360e-23
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    7 VKWLARVMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 300
            +++L  +MS+   E RR F++FVTG+PRLP+GGF AL+P L +V K      G   D+HLPS  TCQ YLKLP Y+S+A + +KL +AI EGQ+ F L
Sbjct:  140 IRFLFEIMSEFTAEQRRLFVQFVTGSPRLPVGGFRALKPPLKIVMKRET---GENADNHLPSVMTCQNYLKLPDYSSKALMLSKLLYAINEGQNAFHL 234
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14108.3008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4E7_ECTSI5.290e-61100.00HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K2P5_9PHAE4.590e-5999.00HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835Z7D6_9STRA1.470e-3465.00HECT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A2R5GSN0_9STRA2.390e-3060.00HECT-type E3 ubiquitin transferase n=1 Tax=Hondaea... [more]
A0A7S1CCF7_9STRA3.200e-2557.14HECT-type E3 ubiquitin transferase n=1 Tax=Bicosoe... [more]
A0A7S1G2E8_9STRA6.000e-2553.47HECT-type E3 ubiquitin transferase n=1 Tax=Bicosoe... [more]
A0A482RGR4_9ARCH2.370e-2451.43HECT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A4P9ZF83_9ASCO1.320e-2353.06HECT-type E3 ubiquitin transferase n=1 Tax=Metschn... [more]
A0A814GCM7_9BILA1.340e-2354.08E3 ubiquitin-protein ligase n=1 Tax=Didymodactylos... [more]
Q5DF45_SCHJA1.360e-2351.02E3 ubiquitin-protein ligase n=1 Tax=Schistosoma ja... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14108contigE-fasciculatus_F_contig14108:59..1171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.7
Seed ortholog evalue3.2e-46
Seed eggNOG ortholog2880.D7G4E7
KEGG koko:K03874,ko:K10590
KEGG Pathwayko04120,map04120
EggNOG free text desc.negative regulation of histone ubiquitination
EggNOG OGsCOG5021@1,KOG0170@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHECT
Ec32 orthologEc-13_002660.1
Exons2
Model size306
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14108.3008.1prot_E-fasciculatus_F_contig14108.3008.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14108 86..1171 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927902.627406-UTR-E-fasciculatus_F_contig14108:58..851622927902.627406-UTR-E-fasciculatus_F_contig14108:58..85Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14108 59..85 +
1695995744.9154303-UTR-E-fasciculatus_F_contig14108:58..851695995744.9154303-UTR-E-fasciculatus_F_contig14108:58..85Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14108 59..85 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927902.6416688-CDS-E-fasciculatus_F_contig14108:85..2651622927902.6416688-CDS-E-fasciculatus_F_contig14108:85..265Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14108 86..265 +
1695995744.9283478-CDS-E-fasciculatus_F_contig14108:85..2651695995744.9283478-CDS-E-fasciculatus_F_contig14108:85..265Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14108 86..265 +
1622927902.6521382-CDS-E-fasciculatus_F_contig14108:1072..11711622927902.6521382-CDS-E-fasciculatus_F_contig14108:1072..1171Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14108 1073..1171 +
1695995744.9379687-CDS-E-fasciculatus_F_contig14108:1072..11711695995744.9379687-CDS-E-fasciculatus_F_contig14108:1072..1171Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14108 1073..1171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14108.3008.1

>prot_E-fasciculatus_F_contig14108.3008.1 ID=prot_E-fasciculatus_F_contig14108.3008.1|Name=mRNA_E-fasciculatus_F_contig14108.3008.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=93bp
MSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPD
SHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD*
back to top

mRNA from alignment at E-fasciculatus_F_contig14108:59..1171+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14108.3008.1 ID=mRNA_E-fasciculatus_F_contig14108.3008.1|Name=mRNA_E-fasciculatus_F_contig14108.3008.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1113bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14108:59..1171+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGCAGGTCAAGTGGTTGGCGCGAGTGATGTCCGACCTCGACACCGAGGG
CCGTCGGCAGTTCCTCCGCTTCGTGACCGGAACTCCTCGCCTTCCGATAG
GGGGGTTCGGGGCTCTCCGGCCCCGCCTTACGGTGGTGAAGAAGGAGGTG
GACGTGCTTCCGGGGGGCACTCCGGACAGCCACCTCCCCAGCTGCTCGAC
GTGCCAGGTATGTATGCCTGCCTGCCTGCATGCATGCAAGTAGGCCGGCC
GGCCGGCCTTGGTAGGAAGTTTCGTCTTCTACCAGTGCAGGATTCGGTAG
ATAATAGCCTTGACAGGGTTTTTTGTTGTTCAGGGAATATGCTGGATAAA
GTGTTACAATCGGGGGGTTAGGGTTAGGGTTAGGGTTAGGGAATAGGGTT
CTGTCTGCGTATCCCCTTCCTGTTCTTTTTCCTCATGGCTTTATCATACT
TAAGTTCCCGCGAAGGAGGTCCGCAGTTGACCCATTTCCATTTCCATCAG
AGGACCTCCCGGGTTCCCAGTAAACGGACCGGTTGTAGACTTGGATGGCG
AATGAAGGACGGTATATTTTTGAAGATCGGTATGTAATATAAGTATGGGT
TTGTTTTGTTTAATTAATTGTTTTTCTTTTGGGTTGGTTTGGGATTGTTG
TATTATTTATTTTTGGGAATTGGGGAGGCAATACATGCCTACATGAAAGC
TTTTCTTGTGCTGTTCTGGTGAAGACAACATAAAATCAGCTCTATCCACA
GGACAGAGTCAGTCCATAAAAAAAAACATGTAACGATGCTATACACAATT
GTGTTGACTTTCAATCAACGTGGTACGAAACTGCTGTGTGTACGTCGAAA
TTCCTCTTGGGCATAAATACACGAAAAACAATCAAGATGAGTTTTCAAAT
CAATCCAGTAAACGTCAAAACCCCCTTCGGCCTAAACAACAGGTGTACCT
GAAGCTTCCGGAGTACCCTAACCCTAACCCTAACCCTAACCCTAACCCTA
ACCCTAAACAACAGGTGTACCTGAAGCTTCCGGCGTACACTTCGAGGGCG
GCGCTGGAGGCCAAGCTCAAGCACGCCATCACGGAGGGACAGGATCACTT
TGCTCTCGACTAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14108:59..1171+

>mRNA_E-fasciculatus_F_contig14108.3008.1 ID=mRNA_E-fasciculatus_F_contig14108.3008.1|Name=mRNA_E-fasciculatus_F_contig14108.3008.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=558bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14108:59..1171+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCCGACCTCGACACCGAGGGCCGTCGGCAGTTCCTCCGCTTCGTGAC
CGGAACTCCTCGCCTTCCGATAGGGGGGTTCGGGGCTCTCCGGCCCCGCC
TTACGGTGGTGAAGAAGGAGGTGGACGTGCTTCCGGGGGGCACTCCGGAC
AGCCACCTCCCCAGCTGCTCGACGTGCCAGATGTCCGACCTCGACACCGA
GGGCCGTCGGCAGTTCCTCCGCTTCGTGACCGGAACTCCTCGCCTTCCGA
TAGGGGGGTTCGGGGCTCTCCGGCCCCGCCTTACGGTGGTGAAGAAGGAG
GTGGACGTGCTTCCGGGGGGCACTCCGGACAGCCACCTCCCCAGCTGCTC
GACGTGCCAGGTGTACCTGAAGCTTCCGGCGTACACTTCGAGGGCGGCGC
TGGAGGCCAAGCTCAAGCACGCCATCACGGAGGGACAGGATCACTTTGCT
CTCGACTAGGTGTACCTGAAGCTTCCGGCGTACACTTCGAGGGCGGCGCT
GGAGGCCAAGCTCAAGCACGCCATCACGGAGGGACAGGATCACTTTGCTC
TCGACTAG
back to top