mRNA_E-fasciculatus_F_contig14107.3007.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14107.3007.1
Unique NamemRNA_E-fasciculatus_F_contig14107.3007.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14107.3007.1 vs. uniprot
Match: A0A6H5L522_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L522_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 3.140e-7
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 2 
Query:    5 APNAERGLEGARGLLGPAPRESTPSVGDVLRENAHREPAS 124
            AP+  RGLEGARGLLGPAPRE TPS G + RE AH E A+
Sbjct:   90 APSTGRGLEGARGLLGPAPREHTPSEGGISREGAHSEQAA 129
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BLAST of mRNA_E-fasciculatus_F_contig14107.3007.1 vs. uniprot
Match: A0A6H5L579_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L579_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 4.230e-7
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 2 
Query:    5 APNAERGLEGARGLLGPAPRESTPSVGDVLRENAHREPAS 124
            AP+  RGLEGARGLLGPAPRE TPS G + RE AH E A+
Sbjct:   90 APSTGRGLEGARGLLGPAPREHTPSEGGISREGAHSEQAA 129
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14107.3007.1 vs. uniprot
Match: A0A6H5KEJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ7_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.770e-6
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 2 
Query:    5 APNAERGLEGARGLLGPAPRESTPSVGDVLRENAHREPASMAR 133
            AP+  RGLEGARGLLGPAPRE TPS G + R+ A  E A+ ++
Sbjct:   90 APSTGRGLEGARGLLGPAPREHTPSEGGISRKGAQSEQAAWSK 132
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14107.3007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L522_9PHAE3.140e-770.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L579_9PHAE4.230e-770.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KEJ7_9PHAE1.770e-660.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14107contigE-fasciculatus_F_contig14107:1072..1801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size409
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927902.4357443-CDS-E-fasciculatus_F_contig14107:1071..11731622927902.4357443-CDS-E-fasciculatus_F_contig14107:1071..1173Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14107 1072..1173 -
1695995744.8978379-CDS-E-fasciculatus_F_contig14107:1071..11731695995744.8978379-CDS-E-fasciculatus_F_contig14107:1071..1173Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14107 1072..1173 -
1622927902.4487622-CDS-E-fasciculatus_F_contig14107:1495..18011622927902.4487622-CDS-E-fasciculatus_F_contig14107:1495..1801Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14107 1496..1801 -
1695995744.9063098-CDS-E-fasciculatus_F_contig14107:1495..18011695995744.9063098-CDS-E-fasciculatus_F_contig14107:1495..1801Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14107 1496..1801 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14107.3007.1prot_E-fasciculatus_F_contig14107.3007.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14107 1072..1801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14107.3007.1

>prot_E-fasciculatus_F_contig14107.3007.1 ID=prot_E-fasciculatus_F_contig14107.3007.1|Name=mRNA_E-fasciculatus_F_contig14107.3007.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=136bp
PSAKRRTRARGSERTAWTGSTRVHAVCGRRLARKRSPRASQHGARSNRRL
CPGLAASRVCSLERVHHPARGEPEETRRWSARRRSKKKTGGDEEAHAASN
GAAVHETRRCLFGPPCSSQWLSYRLMQEASLHDKH*
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mRNA from alignment at E-fasciculatus_F_contig14107:1072..1801-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14107.3007.1 ID=mRNA_E-fasciculatus_F_contig14107.3007.1|Name=mRNA_E-fasciculatus_F_contig14107.3007.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=730bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14107:1072..1801- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCAAGCGCCAAACGCCGAACGAGGGCTCGAGGGAGCGAGAGGACTGCTTG
GACCGGCTCCACGAGAGTCCACGCCGTCTGTGGGAGACGTCTTGCGCGAA
AACGCTCACCGCGAGCCAGCCAGCATGGCGCGCGCTCGAACAGACGTTTG
TGCCCTGGACTGGCGGCGAGCAGAGTTTGCTCATTGGAACGTGTGCATCA
CCCGGCAAGAGGAGAGCCAGAGGAGACAAGGAGATGGTCGGCGAGAAGAC
GGTCGAAGAAGAAAACCGGGGGGGACGAAGAGGCACACGCGGCAAGTAAT
GGGGCTGCTGTCCGATGTCACGTGAAAACATTGCGCATCGAATGCTGTCG
TAGCGAGTGAAACTGTAAGGGCCGTGTTCGGAGTACAGTTGACGAAGTAG
ACGTCAAGGTCGAAGCAATTTGTTTGATAGTAGGTCTCGGTGTGTTGCCT
TTCCTCGCACACAACTGCCTTTACCCCCTGCGCGTGTACAATTCAGTCGG
TTATTTTCTATGAAACGCCGCCTCCGACTGTCCGATGATGGGACTGCTGT
TGGAAACCTTGTGGGTGCCAGAATGTTCCAGGTGTATTATTTTCTTGCTG
TGTTCTTGTGGTTTGAGCTGGTGCGCAGGCAGTCCACGAAACTCGACGTT
GCTTGTTCGGTCCTCCATGCTCATCTCAGTGGCTGTCGTACAGGTTGATG
CAAGAGGCGTCCTTGCATGATAAACATTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14107:1072..1801-

>mRNA_E-fasciculatus_F_contig14107.3007.1 ID=mRNA_E-fasciculatus_F_contig14107.3007.1|Name=mRNA_E-fasciculatus_F_contig14107.3007.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=816bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14107:1072..1801- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCAAGCGCCAAACGCCGAACGAGGGCTCGAGGGAGCGAGAGGACTGCTTG
GACCGGCTCCACGAGAGTCCACGCCGTCTGTGGGAGACGTCTTGCGCGAA
AACGCTCACCGCGAGCCAGCCAGCATGGCGCGCGCTCGAACAGACGTTTG
TGCCCTGGACTGGCGGCGAGCAGAGTTTGCTCATTGGAACGTGTGCATCA
CCCGGCAAGAGGAGAGCCAGAGGAGACAAGGAGATGGTCGGCGAGAAGAC
GGTCGAAGAAGAAAACCGGGGGGGACGAAGAGGCACACGCGGCAAGTAAT
GGGGCTCCAAGCGCCAAACGCCGAACGAGGGCTCGAGGGAGCGAGAGGAC
TGCTTGGACCGGCTCCACGAGAGTCCACGCCGTCTGTGGGAGACGTCTTG
CGCGAAAACGCTCACCGCGAGCCAGCCAGCATGGCGCGCGCTCGAACAGA
CGTTTGTGCCCTGGACTGGCGGCGAGCAGAGTTTGCTCATTGGAACGTGT
GCATCACCCGGCAAGAGGAGAGCCAGAGGAGACAAGGAGATGGTCGGCGA
GAAGACGGTCGAAGAAGAAAACCGGGGGGGACGAAGAGGCACACGCGGCA
AGTAATGGGGCTGCAGTCCACGAAACTCGACGTTGCTTGTTCGGTCCTCC
ATGCTCATCTCAGTGGCTGTCGTACAGGTTGATGCAAGAGGCGTCCTTGC
ATGATAAACATTGAGCAGTCCACGAAACTCGACGTTGCTTGTTCGGTCCT
CCATGCTCATCTCAGTGGCTGTCGTACAGGTTGATGCAAGAGGCGTCCTT
GCATGATAAACATTGA
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