mRNA_E-fasciculatus_F_contig14104.3005.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14104.3005.1
Unique NamemRNA_E-fasciculatus_F_contig14104.3005.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14104.3005.1 vs. uniprot
Match: D7G2J7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2J7_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 2.860e-41
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 MAQETLILTEENVVAVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKTTV 204
            MAQETLILTEENVVAVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKTTV
Sbjct:    1 MAQETLILTEENVVAVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKTTV 68
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BLAST of mRNA_E-fasciculatus_F_contig14104.3005.1 vs. uniprot
Match: A0A6H5JIN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN5_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 4.440e-40
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 MAQETLILTEENVVAVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKTTV 204
            MAQETLILTEENVVAVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKTTV
Sbjct:   93 MAQETLILTEENVVAVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKTTV 160
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BLAST of mRNA_E-fasciculatus_F_contig14104.3005.1 vs. uniprot
Match: A0A0G4GKJ3_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GKJ3_VITBC)

HSP 1 Score: 86.3 bits (212), Expect = 9.970e-20
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    7 QETLILTEENVVAVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKTTV 204
            ++ LILTEENV   L   ++ELS LFGN+ EN +VGITGD EF  LDGP V++RL GRFWH + TV
Sbjct:   73 EDQLILTEENVEKTLEACRQELSALFGNSEENRSVGITGDVEFAGLDGPLVILRLKGRFWHSRATV 138
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BLAST of mRNA_E-fasciculatus_F_contig14104.3005.1 vs. uniprot
Match: A0A7S3T494_EMIHU (Hypothetical protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T494_EMIHU)

HSP 1 Score: 86.7 bits (213), Expect = 1.020e-19
Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:   16 LILTEENVVAVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKTTV 204
            L+LTEENV AVL EA+R+L T+FG+N E+ AVGITG  + V LDGP+VV+RL+GRFWH +  V
Sbjct:   71 LVLTEENVQAVLDEAERDLGTMFGSNPESAAVGITGRADLVELDGPTVVIRLSGRFWHARARV 133
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BLAST of mRNA_E-fasciculatus_F_contig14104.3005.1 vs. uniprot
Match: A0A7S2W728_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W728_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.010e-18
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:   13 TLILTEENVVAVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKTTV 204
            +L LTEEN+  +L   ++E+ T+FG +AEN  VGITG  +FV LDGPSVV+RL GRFWHE++TV
Sbjct:   85 SLPLTEENIQGLLQACRQEIETVFGYSAENRGVGITGGVDFVELDGPSVVLRLKGRFWHERSTV 148
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BLAST of mRNA_E-fasciculatus_F_contig14104.3005.1 vs. uniprot
Match: A0A7S2KV23_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KV23_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.500e-17
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:   22 LTEENVVAVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKTTV 204
            LTEEN+  VLA  + E+ TLFG +AEN  VGITG  +F+ LDGP VV++L GRFWH++ TV
Sbjct:   63 LTEENIEGVLAACREEIGTLFGYSAENRGVGITGGVDFLYLDGPCVVLKLKGRFWHQRPTV 123
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BLAST of mRNA_E-fasciculatus_F_contig14104.3005.1 vs. uniprot
Match: A0A7S3EC75_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EC75_9RHOD)

HSP 1 Score: 80.1 bits (196), Expect = 1.560e-17
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:   13 TLILTEENVVAVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKTTV 204
            T  L+EEN+  VL EAK EL TLFGN+ EN  VGITGD     LDG +VV+RLTGRFWH+++ V
Sbjct:   47 TTYLSEENINIVLEEAKIELGTLFGNSEENREVGITGDVSLAELDGVTVVLRLTGRFWHKRSDV 110
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BLAST of mRNA_E-fasciculatus_F_contig14104.3005.1 vs. uniprot
Match: A0A1Z5JYD7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JYD7_FISSO)

HSP 1 Score: 81.3 bits (199), Expect = 1.640e-17
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:   16 LILTEENVVAVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKTTV 204
            L L+EENV+ VLA  ++E+ TLFG  AEN  VGITG  + V LDGP++++RL GRFWHE+ TV
Sbjct:  101 LELSEENVLGVLAACRQEVGTLFGYTAENRGVGITGGVDLVDLDGPTIILRLKGRFWHERKTV 163
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BLAST of mRNA_E-fasciculatus_F_contig14104.3005.1 vs. uniprot
Match: R7QDY0_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDY0_CHOCR)

HSP 1 Score: 80.1 bits (196), Expect = 1.880e-17
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    4 AQETLILTEENVVAVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKTTV 204
            A +TL+LTEENVV  L E + +L ++FGN+AEN  VGITGD     LDGP VV+ L GRFWH++  V
Sbjct:   71 ADDTLVLTEENVVQALNEVRVKLGSVFGNSAENRGVGITGDVSLSELDGPIVVLSLKGRFWHKRADV 137
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BLAST of mRNA_E-fasciculatus_F_contig14104.3005.1 vs. uniprot
Match: A0A6U6F287_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6F287_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.050e-17
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:   16 LILTEENVVAVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKTTV 204
            L LT ENV  VLA  + E+ T+FG +AEN  VGITG  +FV LDGPSVV+ L GRFWH++TTV
Sbjct:  150 LPLTVENVQGVLAACREEIGTMFGYSAENRGVGITGGVDFVDLDGPSVVLHLKGRFWHQRTTV 212
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14104.3005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2J7_ECTSI2.860e-41100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIN5_9PHAE4.440e-40100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0G4GKJ3_VITBC9.970e-2060.61Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S3T494_EMIHU1.020e-1963.49Hypothetical protein n=3 Tax=Emiliania huxleyi Tax... [more]
A0A7S2W728_9STRA3.010e-1859.38Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2KV23_9STRA1.500e-1759.02Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3EC75_9RHOD1.560e-1760.94Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A1Z5JYD7_FISSO1.640e-1758.73Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
R7QDY0_CHOCR1.880e-1756.72Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A6U6F287_9STRA2.050e-1761.90Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14104contigE-fasciculatus_F_contig14104:2516..3405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.8
Seed ortholog evalue4.7e-31
Seed eggNOG ortholog2880.D7G2J7
EggNOG OGs2BCYA@1,2S115@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_002490.1
Exons2
Model size204
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927902.2952938-CDS-E-fasciculatus_F_contig14104:2515..25721622927902.2952938-CDS-E-fasciculatus_F_contig14104:2515..2572Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14104 2516..2572 +
1695995744.8343732-CDS-E-fasciculatus_F_contig14104:2515..25721695995744.8343732-CDS-E-fasciculatus_F_contig14104:2515..2572Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14104 2516..2572 +
1622927902.3114653-CDS-E-fasciculatus_F_contig14104:3258..34051622927902.3114653-CDS-E-fasciculatus_F_contig14104:3258..3405Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14104 3259..3405 +
1695995744.8440382-CDS-E-fasciculatus_F_contig14104:3258..34051695995744.8440382-CDS-E-fasciculatus_F_contig14104:3258..3405Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14104 3259..3405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14104.3005.1prot_E-fasciculatus_F_contig14104.3005.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14104 2516..3405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14104.3005.1

>prot_E-fasciculatus_F_contig14104.3005.1 ID=prot_E-fasciculatus_F_contig14104.3005.1|Name=mRNA_E-fasciculatus_F_contig14104.3005.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=68bp
MAQETLILTEENVVAVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDG
PSVVVRLTGRFWHEKTTV
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mRNA from alignment at E-fasciculatus_F_contig14104:2516..3405+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14104.3005.1 ID=mRNA_E-fasciculatus_F_contig14104.3005.1|Name=mRNA_E-fasciculatus_F_contig14104.3005.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=890bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14104:2516..3405+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGCAAGAGACCCTCATCCTTACGGAGGAGAACGTCGTCGCTGTGCT
GGCCGAAGTGAGGAGTATGCCTGTCAACATGTCGCGTTATAGAAGATATG
ATATACTGCTGCAGTACTGCCGTACTCTGAGATGTGGTAGAGCTTTGGAC
TGCTGTACCGTCAGCGGACGGCTGGTTGTCCAGTGGTCATATTGCTTTTC
AACAGGGACGACCTGTACCGCTGCGTCGTTACGACGGGTGTGCGCAGACG
AGGGGCGGAAGCTGGGTCGTGGCTTCAGCAAACGCAGCACACAGACCAAA
GGCAGTGCTTGCCACTTGGTCGAAACTGGTGAAAATTGGACGGTCTCCAT
GTCGGGCCGCGATCCGTACCAGCTGGCCTCTGGCATGTAGTTTTTTTCCA
GTGCAAGCCGACCTGCAGCAGTAGGTCCCATCCATGAATGGGGTGAATTG
CTGCTGTCTTTCACGCTTTAGTCAACATCGGGAAACCCGTAGCACACGGA
CTTTCCCACAGCCAGACGGCACATACGTCTCGAAATAGTCGATAGTTCCC
CACTCGATATGCTCTTTCTCAGGAGCACAACATGAGTTCGTCACCCACTT
GCCTGGCTCTAGCGCCCTTCAACAAAGCTGAACCTCTGCAACTGCTGCTG
TTTTCTGGAACCAAGGAACCAAGTCTCGATTGCGTGTGGACTCTTTTGCC
CTACCCCATGAGGACCCTTTCGCACTCCATCCATGCACAACAGGCGAAAC
GAGAGCTCAGCACGTTGTTTGGCAACAACGCGGAGAACACGGCCGTTGGG
ATTACGGGCGACTGCGAGTTCGTGTGCCTGGATGGGCCCAGCGTGGTAGT
GCGTCTAACCGGAAGATTCTGGCACGAAAAGACCACGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14104:2516..3405+

>mRNA_E-fasciculatus_F_contig14104.3005.1 ID=mRNA_E-fasciculatus_F_contig14104.3005.1|Name=mRNA_E-fasciculatus_F_contig14104.3005.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=408bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14104:2516..3405+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGCAAGAGACCCTCATCCTTACGGAGGAGAACGTCGTCGCTGTGCT
GGCCGAAATGGCGCAAGAGACCCTCATCCTTACGGAGGAGAACGTCGTCG
CTGTGCTGGCCGAAGCGAAACGAGAGCTCAGCACGTTGTTTGGCAACAAC
GCGGAGAACACGGCCGTTGGGATTACGGGCGACTGCGAGTTCGTGTGCCT
GGATGGGCCCAGCGTGGTAGTGCGTCTAACCGGAAGATTCTGGCACGAAA
AGACCACGGTGGCGAAACGAGAGCTCAGCACGTTGTTTGGCAACAACGCG
GAGAACACGGCCGTTGGGATTACGGGCGACTGCGAGTTCGTGTGCCTGGA
TGGGCCCAGCGTGGTAGTGCGTCTAACCGGAAGATTCTGGCACGAAAAGA
CCACGGTG
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