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Homology
BLAST of mRNA_E-fasciculatus_F_contig141.2999.1 vs. uniprot
Match: D7G702_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G702_ECTSI) HSP 1 Score: 501 bits (1291), Expect = 7.160e-172 Identity = 312/356 (87.64%), Postives = 315/356 (88.48%), Query Frame = 2
Query: 251 MFDMLASKIGEAQAFADGLVNLDVINMDRLLEEQEREXXXXXXSLRLLRSSDETXXXXXXXXXXXXXXXXXXXXRAEREVNSLGRAGALGDIEIPQLRQEENAELRSHPSPRGSASEHSSFGDRFASMEDGGVNFEDEFDPILASIRKPQQPPASTTTAARGMSPRGRXXXXXXXXXXXXXXXXREANDAGRPTTGSSLAAGFLSMLPGDMRAKAGEVMAQSSARISDSANAFRSALGPGGAAQSATDKSKRRQSDPTYRGVDGGDRELGEGRGDEDDVRLMNVNEVLSEEERQQLASFAGGAGAGRFCGWRRLRKYIPVFVGIGLLGLFYLWRWTTLLVGKDTANGVKVLGSERM 1318
MFDMLASKIGEAQAFADGLVNLDVINMDRLLEEQER XXXXXX LRL XXXXXXXXXXXXXXXXXXXX GDIEIPQLRQE+NAELRSHPSPRGS SEHSSFGDRFASMEDGGVNFEDEFDPILASIRKPQQPPASTT AA MSPRGRXXXXXXXXX REANDAGRPTTGSSLAAGFLSMLPGDMRAKAGEVMAQSSARIS+SANAFRSALGPGGAAQSATDKSKRRQSD T RGVDGGD EL EGRGDEDDVRLMNVNEVLSEEERQQLASFAGGAGAGRFCGWRRLRKY+PVFVGIGLLGL YLWRWTTLLVGKDTAN VKVLGSERM
Sbjct: 1 MFDMLASKIGEAQAFADGLVNLDVINMDRLLEEQERXXXXXXXXLRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDIEIPQLRQEDNAELRSHPSPRGSTSEHSSFGDRFASMEDGGVNFEDEFDPILASIRKPQQPPASTTAAASSMSPRGRXXXXXXXXXPSGRERGREANDAGRPTTGSSLAAGFLSMLPGDMRAKAGEVMAQSSARISESANAFRSALGPGGAAQSATDKSKRRQSDHTCRGVDGGDHELEEGRGDEDDVRLMNVNEVLSEEERQQLASFAGGAGAGRFCGWRRLRKYVPVFVGIGLLGLLYLWRWTTLLVGKDTANEVKVLGSERM 356
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_011590.1 |
| Exons | 4 |
| Model size | 1859 |
| Cds size | 1071 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig141.2999.1 >prot_E-fasciculatus_F_contig141.2999.1 ID=prot_E-fasciculatus_F_contig141.2999.1|Name=mRNA_E-fasciculatus_F_contig141.2999.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=357bp
MFDMLASKIGEAQAFADGLVNLDVINMDRLLEEQEREERSKEESLRLLRS
SDETTDASSSQDSSGTSTTAPTAGRAEREVNSLGRAGALGDIEIPQLRQE
ENAELRSHPSPRGSASEHSSFGDRFASMEDGGVNFEDEFDPILASIRKPQ
QPPASTTTAARGMSPRGRPAAATTTAPQSGGDRGREANDAGRPTTGSSLA
AGFLSMLPGDMRAKAGEVMAQSSARISDSANAFRSALGPGGAAQSATDKS
KRRQSDPTYRGVDGGDRELGEGRGDEDDVRLMNVNEVLSEEERQQLASFA
GGAGAGRFCGWRRLRKYIPVFVGIGLLGLFYLWRWTTLLVGKDTANGVKV
LGSERM* back to topmRNA from alignment at E-fasciculatus_F_contig141:26492..30487+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig141.2999.1 ID=mRNA_E-fasciculatus_F_contig141.2999.1|Name=mRNA_E-fasciculatus_F_contig141.2999.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3996bp|location=Sequence derived from alignment at E-fasciculatus_F_contig141:26492..30487+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGTGTGCGTGATTACGTGCGTGCTCGCAGGTACAGAAACCTCCGCCATT
TGCCCACCCGGAAGACCCAGACGGCTGCGTGCTTCACGCGAGACAGGAGC
GCCGAGGCGGCGGAAATACAAGCAGTACAACCTCTCTGCGCTTCTGGGGG
GCATGCCAGTAGGGGACCGCAGAGCAGGACGGCCCTAGCAACGCCATATT
CGAAGTAGACAAGCGCGTCCTCTGCGTAGTTGGGCGAGCGACTGTGGAAG
ATGTTCGACATGCTAGCATCCAAGATTGGCGAGGCGCAAGCTTTTGCGGA
TGGTCTGGTGAACCTCGATGTTATCAACATGGACAGGTAGGTGATGCCTA
AGGCAGCGGTGCGCCATTCAGCACACACAGCAGGAACAGTTTATCGCCAA
TGGGCGCATGCGTGCCTCTTGTAGTGTCCTGCTGTTTTTTACGATATGCC
GTCCTCGAAGATTAGAACTGAACCCACTTCCTTGGTTCCGTGTTCCGTGT
GTAGGCGATGCGGCAATGAAGAAGTTTGAAAGCGCCATCATTACGTAGTT
CCACCGCTTTCATTTGAAGCAGCCCCTTGTCCCCTGAATTGTTGAGGAAT
TTGGACCAGAGATCCATGTGCCCTCAGCTGACCCCCCAGGCGCGGCCTCC
TCAGGGTGTGAGGGGGGAGGCCCAGCCACAGACCCTCATAGGGTAGGGTA
CAACTTCTTCTTCAAGTACATGATTTTGCATGATTTGTTCAGGGGTCCAA
TGGATGGGATAACGGAAGGGTACCGTCATCATCGCCAGATCCTACGATCC
AAGTCCCCAGCAGTAACCCGGTCTACTAGTGCCCACACCCCTTTCTTTCT
TTCGGTGTACCCCTCAGTACCAATAAAACATGTTATTTCTTTGCAGCTAC
AATACATGTACTGCTCGCCTGCCCTCGTATATGTATGTGTATAGCAGTAC
TGCTGTAGACTAGTCAACCACTGAAATCCCCTGGAAACGTTCGACGAAAT
TGTTTTACACGAGTTTGGACAAGTCAGGGACGGCATGCCCCAATTCACTC
GACGACGGTAACATTCTTACAATGTTCGGTGCATTGAGGGAACCCCTGAA
ATTCCGTTAATTCTGTCGAATCACACCCCGTCACAGCCCGTATTTGCTTG
CGTCGCTTAACAAGAGGCTGGGATGGTGTGCATGGCCGTTGACGAGCTTG
GCGTGCATTGGATAGATACTCGCCGTGTGCGACCGTAGTCATTTTGTACG
TACGGAAGCGGGACACCAGAATGTGTCGACAGAAATACCTTGGCATGGCC
GGTATGCACGCGCTTCCTGGCCATAGGTTCATCCGCTACCATTCGGAATT
TATCGCAAAATTTCCCGTATCCCTTCACCTCTGACACCCACCCCTCTTGT
CATATCGGGTGTCCCGCGATGCGTGTACCGCACCCACAAACTACATTTTG
TAGATTGCTCGAAGAGCAAGAGAGGGAGGAGAGGTCCAAAGAAGAATCGC
TCCGGCTCCTGAGAAGCTCGGACGAGACGACCGACGCGTCTTCCTCCCAG
GACTCCTCGGGCACGAGCACCACGGCGCCAACGGCGGGGAGGGCGGAGAG
GGAGGTCAACAGCCTTGGTAGAGCGGGCGCGCTCGGCGATATTGAGATCC
CACAGCTCCGGCAAGAAGAAAATGCCGAACTTCGTAGTCACCCGTCGCCG
AGGGGTAGCGCGAGCGAGCACAGCAGTTTCGGCGACAGGTTTGCCTCAAT
GGAGGACGGCGGGGTAAACTTCGAGGACGAGTTCGACCCCATCTTGGCGT
CGATACGGAAACCGCAGCAGCCGCCGGCGAGCACGACAACTGCGGCGAGA
GGCATGTCGCCGAGAGGTCGTCCTGCGGCAGCGACAACAACGGCGCCCCA
GTCCGGCGGAGACAGAGGGCGAGAGGCAAACGATGCAGGAAGGCCTACCA
CCGGATCCTCCCTGGCAGCGGGCTTCTTGTCTATGCTCCCGGGGGACATG
CGGGCGAAAGCCGGAGAGGTGATGGCGCAGTCTAGCGCACGTATCTCCGA
TTCTGCGAACGCGTTTCGGTCTGCTTTAGGCCCCGGCGGCGCGGCGCAAT
CAGCGACCGATAAGTCGAAGAGGAGACAATCAGACCCGACCTACCGCGGG
GTGGATGGCGGTGATCGCGAGCTTGGAGAGGGAAGAGGGGACGAGGACGA
TGTGCGGCTGATGAACGTGAACGAGGTGCTGAGCGAGGAGGAGGTGAGGA
CATCTACAAGGGACGGGATGTAGCGGTTTGTCTCTCTGCTGCAAGTGCAG
CACACATGAAGTTGCAGCTTGGTTTGGAGGTAGAACCATGAGCTACAATC
TTATGGAATGCGCTGTACGTTTGGCTTGCAGAACCTTACCGCGATTTGAA
CCATATGAATCAAAGGAAGTCAGAACACTTGTAAGTCCATCGTGCGGCAA
TGATGAGCATAACATACGGGTACACGCTATCGGGATGGTGAGGCTCGAAC
CAACGTTGACCAGAAACAGAGTTGCCCAAAGCCCGCAACAGTTTAACCGT
GTAGAGTTTCATGCGTGTAGCACGCCGAAGTCGCACTTTTGGCGGGATGC
ACCATCGCGGCTGCAGCTGGGGCCGCACAAGGCTTATCAAAGGTCCCCAC
GGAGAAGACAGATTATTGGCTTATTGGCCCCCGTTCAGATACTACAGTTA
TTTTCAGACAAGTTTTTTCTAGCGGTTATTGTGTACATGGCCGGAAACAC
GTGTAAGCGAGCGTTGGGCCGGTCGATTATTGGATCGGGCCTGAGTACCT
GCGGTTGGTTGGTGTTGCCCGTCGCACGTGGCACACAACTTTGTTGAGAA
GCTCACTCATTTCGGCTGGCGAGTGCCGGTTGAATGAATAGCGTGTCCAA
GCTGGCTTGCTATCTCTTTGATTGTGCCATGCCTATCGTGGCGTGTGTCG
TCTATTGTTGTACTGCACTCAACCCTTTGCCCCTGTCTCGCTCTTCCACG
CTCCTCCAATCCCAGAGGCAACAACTTGCATCTTTTGCGGGGGGAGCTGG
GGCAGGGAGATTTTGTGGATGGCGGAGGCTCCGAAAGTACATTCCTGTTT
TTGTTGGTGAGCGGAAGGTACCTTGTGTACGTTTGATGTATCCCCATCAG
AGCCAATCTCGACCGATGAAGCATCACATCAAAACGTTTGGCCCGTCGAT
CATTGACTTCTGTTTTTTTCTTCTGGTAGATGCATTCGTGTTGTTTTTAT
TTCGGTCTATGGGCCAGAATCGGCGCGTTTTCTATACGCCAACATCACAC
CAGTAGTAATTTCCACTCCTCCCGGTCCTCCCCTGCTTGTGTACCGCGCC
ACAGGCATCGGGCTACTCGGCTTGTTTTACCTCTGGCGATGGACCACGTT
GCTTGTAGGCAAGGACACCGCGAACGGAGTCAAGGTGTTGGGCTCGGAAA
GGATGTGACCACTTGTCCATCCATGTTACGATTGCTGGGAACTAAGTAGT
TGTAGCACGTTATGGCTTCATGTTTTGTGGGTCGGGATTTGTTCATCAGT
GGATCGGATGTATATACTGGTTGGCGTTGATGCCGTTGGGGGCACCTCGT
GAAAGCACTGCAACATTTCGAGACGCTTTCTCGCGGTTTTTTTCCGTTCT
GCCACCAAGGCTTGCTTCGAACCCGCAAGGAGGGAGGATAGGTGTGAAGC
TGCCGCCGCTGCTTTTCTTGTGCCGTTTCTCAAGTAAATGCATAGCGTAG
GGCGGAGTCACTCTAACCACTGAATTTGCTGTGTGTCGACTGGACGAACG
AATTAATTCTTGTTTGGCCGCCCAACAGGAATTACGAAAAATGCTCTCAC
GGGTGTGTCTCGCAGGTAATTTTCCGAGTGTCAATTTTTAAAATCTTGCA
TGTAGCTGCTCCGATGAACGGGCGGAACAAAACAAAGACACGTCTCGATA
GTTCTGCCGAAGATTTGTTCCTGGAATCGTTTTTTGTGGTCTGAAG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig141:26492..30487+ >mRNA_E-fasciculatus_F_contig141.2999.1 ID=mRNA_E-fasciculatus_F_contig141.2999.1|Name=mRNA_E-fasciculatus_F_contig141.2999.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2142bp|location=Sequence derived from alignment at E-fasciculatus_F_contig141:26492..30487+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTCGACATGCTAGCATCCAAGATTGGCGAGGCGCAAGCTTTTGCGGA
TGGTCTGGTGAACCTCGATGTTATCAACATGGACAGATGTTCGACATGCT
AGCATCCAAGATTGGCGAGGCGCAAGCTTTTGCGGATGGTCTGGTGAACC
TCGATGTTATCAACATGGACAGATTGCTCGAAGAGCAAGAGAGGGAGGAG
AGGTCCAAAGAAGAATCGCTCCGGCTCCTGAGAAGCTCGGACGAGACGAC
CGACGCGTCTTCCTCCCAGGACTCCTCGGGCACGAGCACCACGGCGCCAA
CGGCGGGGAGGGCGGAGAGGGAGGTCAACAGCCTTGGTAGAGCGGGCGCG
CTCGGCGATATTGAGATCCCACAGCTCCGGCAAGAAGAAAATGCCGAACT
TCGTAGTCACCCGTCGCCGAGGGGTAGCGCGAGCGAGCACAGCAGTTTCG
GCGACAGGTTTGCCTCAATGGAGGACGGCGGGGTAAACTTCGAGGACGAG
TTCGACCCCATCTTGGCGTCGATACGGAAACCGCAGCAGCCGCCGGCGAG
CACGACAACTGCGGCGAGAGGCATGTCGCCGAGAGGTCGTCCTGCGGCAG
CGACAACAACGGCGCCCCAGTCCGGCGGAGACAGAGGGCGAGAGGCAAAC
GATGCAGGAAGGCCTACCACCGGATCCTCCCTGGCAGCGGGCTTCTTGTC
TATGCTCCCGGGGGACATGCGGGCGAAAGCCGGAGAGGTGATGGCGCAGT
CTAGCGCACGTATCTCCGATTCTGCGAACGCGTTTCGGTCTGCTTTAGGC
CCCGGCGGCGCGGCGCAATCAGCGACCGATAAGTCGAAGAGGAGACAATC
AGACCCGACCTACCGCGGGGTGGATGGCGGTGATCGCGAGCTTGGAGAGG
GAAGAGGGGACGAGGACGATGTGCGGCTGATGAACGTGAACGAGGTGCTG
AGCGAGGAGGAGATTGCTCGAAGAGCAAGAGAGGGAGGAGAGGTCCAAAG
AAGAATCGCTCCGGCTCCTGAGAAGCTCGGACGAGACGACCGACGCGTCT
TCCTCCCAGGACTCCTCGGGCACGAGCACCACGGCGCCAACGGCGGGGAG
GGCGGAGAGGGAGGTCAACAGCCTTGGTAGAGCGGGCGCGCTCGGCGATA
TTGAGATCCCACAGCTCCGGCAAGAAGAAAATGCCGAACTTCGTAGTCAC
CCGTCGCCGAGGGGTAGCGCGAGCGAGCACAGCAGTTTCGGCGACAGGTT
TGCCTCAATGGAGGACGGCGGGGTAAACTTCGAGGACGAGTTCGACCCCA
TCTTGGCGTCGATACGGAAACCGCAGCAGCCGCCGGCGAGCACGACAACT
GCGGCGAGAGGCATGTCGCCGAGAGGTCGTCCTGCGGCAGCGACAACAAC
GGCGCCCCAGTCCGGCGGAGACAGAGGGCGAGAGGCAAACGATGCAGGAA
GGCCTACCACCGGATCCTCCCTGGCAGCGGGCTTCTTGTCTATGCTCCCG
GGGGACATGCGGGCGAAAGCCGGAGAGGTGATGGCGCAGTCTAGCGCACG
TATCTCCGATTCTGCGAACGCGTTTCGGTCTGCTTTAGGCCCCGGCGGCG
CGGCGCAATCAGCGACCGATAAGTCGAAGAGGAGACAATCAGACCCGACC
TACCGCGGGGTGGATGGCGGTGATCGCGAGCTTGGAGAGGGAAGAGGGGA
CGAGGACGATGTGCGGCTGATGAACGTGAACGAGGTGCTGAGCGAGGAGG
AGAGGCAACAACTTGCATCTTTTGCGGGGGGAGCTGGGGCAGGGAGATTT
TGTGGATGGCGGAGGCTCCGAAAGTACATTCCTGTTTTTGTTGAGGCAAC
AACTTGCATCTTTTGCGGGGGGAGCTGGGGCAGGGAGATTTTGTGGATGG
CGGAGGCTCCGAAAGTACATTCCTGTTTTTGTTGGCATCGGGCTACTCGG
CTTGTTTTACCTCTGGCGATGGACCACGTTGCTTGTAGGCAAGGACACCG
CGAACGGAGTCAAGGTGTTGGGCTCGGAAAGGATGTGAGCATCGGGCTAC
TCGGCTTGTTTTACCTCTGGCGATGGACCACGTTGCTTGTAGGCAAGGAC
ACCGCGAACGGAGTCAAGGTGTTGGGCTCGGAAAGGATGTGA back to top
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