mRNA_E-fasciculatus_F_contig141.2996.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig141.2996.1 vs. uniprot
Match: D7G6Z9_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z9_ECTSI) HSP 1 Score: 398 bits (1023), Expect = 9.140e-139 Identity = 207/226 (91.59%), Postives = 212/226 (93.81%), Query Frame = 1
Query: 1 CTFIFPMIPAPSALGDLPPGALTEAVSAENAAGATCSPADEVGDDFSILKYEDPVLARPDIAFDMRMGHDSLPQYISLYASDERRPDEAAQRLAGVGATAPGSAK-TTRRPRGGGDDLTAVLKAILPNKEYADVAGEWVQTVSGTVRTRGELENVQKKVEARLATLQARPGAVCAVRESVFSELYDEVVREITLQSPERGLLLLRLRDETRMNLDTYAEIYRCLRL 675
C FIFPMIP PSALGDLP GALTEAVSAE+AAG TCS ADEV DDFSILKYEDPVLARPDIAFDMRMGHDSLPQYISLYASDERRPDEA QRLAGVGA APGS + TTRRPRGGGDD+TAVLKAILPNKEYAD AGEWVQTVSGTVR+RGELE VQ KVEARLATLQARPGAVCAVRESVFSELYDEV+REITLQSPERGLLLLRLRDETRMNLDTYAEIYRCL L
Sbjct: 13 CIFIFPMIPEPSALGDLPLGALTEAVSAESAAGPTCSSADEVDDDFSILKYEDPVLARPDIAFDMRMGHDSLPQYISLYASDERRPDEATQRLAGVGAAAPGSTRNTTRRPRGGGDDITAVLKAILPNKEYADAAGEWVQTVSGTVRSRGELEKVQNKVEARLATLQARPGAVCAVRESVFSELYDEVIREITLQSPERGLLLLRLRDETRMNLDTYAEIYRCLML 238
BLAST of mRNA_E-fasciculatus_F_contig141.2996.1 vs. uniprot
Match: D8LS54_ECTSI (p28, 28 kDa light chain of axonemal inner dynein arms n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS54_ECTSI) HSP 1 Score: 102 bits (255), Expect = 2.820e-23 Identity = 56/149 (37.58%), Postives = 84/149 (56.38%), Query Frame = 1
Query: 214 LPQYISLYASDERRPDEAAQRLAGVGATAPGSAKTTRRPRGGGDDLTAVLKAILPNKEYADVAGEWVQTVSGTVRTRGELENVQKKVEARLATLQARPGAVCAVRESVFSELYDEVVREITLQSPERGLLLLRLRDETRMNLDTYAEIY 660
+P + SL D G GA G A T RP +D+ L +ILP +E+ D WVQ VS T TR ++ N+Q++++ +L QAR +C VRE ++S+ +DE++R++T+ ERGLLLLR+RDE M + Y +Y
Sbjct: 2 IPPHNSLVKYDNPILVSTTGNRGGKGAKKKGQAPTVERPSSQTEDI---LNSILPPREWTDDGQLWVQYVSSTPATRLDVTNLQEQLDQKLQQRQARETGICPVREELYSQCFDELIRQVTINCAERGLLLLRVRDEIHMTIAAYQTMY 147
BLAST of mRNA_E-fasciculatus_F_contig141.2996.1 vs. uniprot
Match: F0Y5N0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5N0_AURAN) HSP 1 Score: 102 bits (253), Expect = 2.910e-23 Identity = 45/101 (44.55%), Postives = 70/101 (69.31%), Query Frame = 1
Query: 358 VLKAILPNKEYADVAGEWVQTVSGTVRTRGELENVQKKVEARLATLQARPGAVCAVRESVFSELYDEVVREITLQSPERGLLLLRLRDETRMNLDTYAEIY 660
++ ++LP +E+ +G W+Q VS TR ++ ++Q+ ++ RL QAR +C VRE ++S+ YDE++R+ITL PERGLLLLR+RDE RM +D Y +Y
Sbjct: 1 MVNSMLPPREWTQTSGTWMQYVSKKTATRMDVISLQEDLDKRLLDRQARDAGICPVREDLYSQCYDELIRQITLDGPERGLLLLRVRDEIRMTIDAYKVLY 101
BLAST of mRNA_E-fasciculatus_F_contig141.2996.1 vs. uniprot
Match: A0A7S2UXS2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXS2_9STRA) HSP 1 Score: 102 bits (254), Expect = 8.120e-23 Identity = 46/106 (43.40%), Postives = 74/106 (69.81%), Query Frame = 1
Query: 343 DDLTAVLKAILPNKEYADVAGEWVQTVSGTVRTRGELENVQKKVEARLATLQARPGAVCAVRESVFSELYDEVVREITLQSPERGLLLLRLRDETRMNLDTYAEIY 660
DD+ + +++P +E+ DV+G W+Q +S TR ++ +Q++++ RL QAR +C VRE ++S+ +DE++R +TL SPERGLLLLR+RDE RM +D Y +Y
Sbjct: 61 DDM---MNSMIPPREWTDVSGTWMQYISKESATRLDVITLQEQLDKRLVERQARETDICPVREDLYSQCFDELIRHVTLDSPERGLLLLRVRDEIRMTIDAYKTLY 163
BLAST of mRNA_E-fasciculatus_F_contig141.2996.1 vs. uniprot
Match: A0A024UXY1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UXY1_9STRA) HSP 1 Score: 100 bits (250), Expect = 9.580e-23 Identity = 53/134 (39.55%), Postives = 82/134 (61.19%), Query Frame = 1
Query: 289 GATAPGSAKTTRRPRGGGDDLTAVLKAILPNKEYADVAGEWVQTVSGTVRTRGELENVQKKVEARLATLQARPGAVCAVRESVFSELYDEVVREITLQSPERGLLLLRLRDETRMNLDTYAEIYRCLRLTLPSQ 690
GA +TTR G +LKA+LP++E+ D G+W Q VS +R E+ +Q+ + + L QA+ +CA RE + ++L+DE++R++TL PERGLLL+R+RDE RM + Y +Y RL+LP +
Sbjct: 49 GAVTESKQQTTRGTTGQSLVSPEILKAMLPSREWKDENGKWQQNVSMEPSSRAEVLELQETLASNLVKEQAKQVGICANRERLHAQLFDEIIRQVTLACPERGLLLMRVRDEIRMTIAVYQALYNT-RLSLPKR 181
BLAST of mRNA_E-fasciculatus_F_contig141.2996.1 vs. uniprot
Match: A0A7S4NUJ5_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NUJ5_GUITH) HSP 1 Score: 99.4 bits (246), Expect = 1.400e-22 Identity = 46/101 (45.54%), Postives = 70/101 (69.31%), Query Frame = 1
Query: 358 VLKAILPNKEYADVAGEWVQTVSGTVRTRGELENVQKKVEARLATLQARPGAVCAVRESVFSELYDEVVREITLQSPERGLLLLRLRDETRMNLDTYAEIY 660
VL +ILP +E+ + WVQ VS T TR ++ N+Q++++++L T QAR +C VRE +F + +DEV+R++T+ ERGLLLLR+RDE RM + Y +Y
Sbjct: 57 VLNSILPPREWTEDGQLWVQFVSSTPATRLDVINLQEELDSKLQTRQARETGICPVREELFRQTFDEVIRQVTINCAERGLLLLRVRDEIRMRIAAYQTLY 157
BLAST of mRNA_E-fasciculatus_F_contig141.2996.1 vs. uniprot
Match: A0A7S1GAQ8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GAQ8_9STRA) HSP 1 Score: 101 bits (251), Expect = 1.850e-22 Identity = 48/108 (44.44%), Postives = 75/108 (69.44%), Query Frame = 1
Query: 340 GDDLTAVLKAILPNKEYADV-AGEWVQTVSGTVRTRGELENVQKKVEARLATLQARPGAVCAVRESVFSELYDEVVREITLQSPERGLLLLRLRDETRMNLDTYAEIY 660
G + VL +ILP + +AD A +W+Q VS T +R ++ N+Q+ ++ +L QAR +C VRE ++S+ +DE++R++T+ SPERGLLLLR+RDE RM +D Y +Y
Sbjct: 46 GGHIEEVLNSILPPRMWADEGAADWMQYVSKTPASRLDVINLQEALDEKLMERQAREMGICPVREDLYSQCFDELIRQVTINSPERGLLLLRVRDEIRMTIDAYKTLY 153
BLAST of mRNA_E-fasciculatus_F_contig141.2996.1 vs. uniprot
Match: A0A1S3K7C8_LINUN (33 kDa inner dynein arm light chain, axonemal n=11 Tax=Bilateria TaxID=33213 RepID=A0A1S3K7C8_LINUN) HSP 1 Score: 101 bits (251), Expect = 2.610e-22 Identity = 60/176 (34.09%), Postives = 94/176 (53.41%), Query Frame = 1
Query: 139 SILKYEDPVLARPDIAFDMRMGHDSLPQYISLYASDERRPDEAAQRLAGVGATAPGSAKTTRRP--RGGGDDLTAVLKAILPNKEYADVAGEWVQTVSGTVRTRGELENVQKKVEARLATLQARPGAVCAVRESVFSELYDEVVREITLQSPERGLLLLRLRDETRMNLDTYAEIY 660
S++KY++PVL R P+ +L S + PD+ G + PG K P +L +ILP +E+ + WVQ VS T TR ++ N+Q++++ RL QAR +C VR ++S+ +DE++R++T+ ERGLLLLR+RDE RM + Y +Y
Sbjct: 7 SLVKYDNPVLVS-------RNTDKKTPRARALKVSSPQPPDQ------GPVPSPPGGKKGAVPPIDAKAAQQTDEILNSILPPREWTENGQLWVQQVSSTPATRLDVVNLQEELDRRLQQRQARETGICPVRRELYSQCFDELIRQVTINCAERGLLLLRVRDEIRMTIAAYQTLY 169
BLAST of mRNA_E-fasciculatus_F_contig141.2996.1 vs. uniprot
Match: A0A6G0XVN6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVN6_9STRA) HSP 1 Score: 100 bits (248), Expect = 4.190e-22 Identity = 44/101 (43.56%), Postives = 70/101 (69.31%), Query Frame = 1
Query: 358 VLKAILPNKEYADVAGEWVQTVSGTVRTRGELENVQKKVEARLATLQARPGAVCAVRESVFSELYDEVVREITLQSPERGLLLLRLRDETRMNLDTYAEIY 660
VL A+LP + + + G W++ VS TR ++ +Q++++A+L QAR +C VRE ++S+ +DE++R++T+ SPERGLLLLR+RDE RM D Y +Y
Sbjct: 44 VLNAMLPAQSWKEDTGFWMRYVSAEPSTRFDVIKLQEQMDAKLIKRQARESGICPVREDIYSQCFDELIRQVTINSPERGLLLLRIRDEIRMTTDAYKTLY 144
BLAST of mRNA_E-fasciculatus_F_contig141.2996.1 vs. uniprot
Match: A0A1V9YGG0_9STRA (Dynein light chain intermediate polypeptide n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YGG0_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 6.250e-22 Identity = 43/101 (42.57%), Postives = 70/101 (69.31%), Query Frame = 1
Query: 358 VLKAILPNKEYADVAGEWVQTVSGTVRTRGELENVQKKVEARLATLQARPGAVCAVRESVFSELYDEVVREITLQSPERGLLLLRLRDETRMNLDTYAEIY 660
VL A+LP +++ + G W++ S TR ++ +Q++++A+L QAR +C VRE ++++ +DE++RE+T+ SPERGLLLLR+RDE RM D Y +Y
Sbjct: 46 VLNAMLPPQQWKEDTGYWMRYTSAEPSTRFDVIKLQEQMDAKLIKRQARESGICPVREDIYAQCFDELIREVTINSPERGLLLLRIRDEIRMTTDAYKTLY 146 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig141.2996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig141.2996.1 >prot_E-fasciculatus_F_contig141.2996.1 ID=prot_E-fasciculatus_F_contig141.2996.1|Name=mRNA_E-fasciculatus_F_contig141.2996.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=225bp MIPAPSALGDLPPGALTEAVSAENAAGATCSPADEVGDDFSILKYEDPVLback to top mRNA from alignment at E-fasciculatus_F_contig141:3979..5511- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig141.2996.1 ID=mRNA_E-fasciculatus_F_contig141.2996.1|Name=mRNA_E-fasciculatus_F_contig141.2996.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1533bp|location=Sequence derived from alignment at E-fasciculatus_F_contig141:3979..5511- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig141:3979..5511- >mRNA_E-fasciculatus_F_contig141.2996.1 ID=mRNA_E-fasciculatus_F_contig141.2996.1|Name=mRNA_E-fasciculatus_F_contig141.2996.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1350bp|location=Sequence derived from alignment at E-fasciculatus_F_contig141:3979..5511- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |