mRNA_E-fasciculatus_F_contig14097.2993.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14097.2993.1
Unique NamemRNA_E-fasciculatus_F_contig14097.2993.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14097.2993.1 vs. uniprot
Match: D7G6T3_ECTSI (Alpha,alpha-trehalase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T3_ECTSI)

HSP 1 Score: 352 bits (904), Expect = 4.970e-118
Identity = 204/242 (84.30%), Postives = 209/242 (86.36%), Query Frame = 1 
Query:   16 VAGFSGACHELAAAAESGWDFSSRWAGLSSRERSSSTAASSEGRDKSMSSMEEDGEQGEEEGEAFRLCETATTSVVPVDLNAFLHRAELNIARLHHALAGHRTNRKEAGSSSEAAAAEDGHLTLTTLPTMPPLLSLDGIQRRFLSRRRCSMKSWSSMSSTLMEKLARQGELGFGSEEADTTSPTASGGGSXXDGGLGLESRPLSRKAMLFAAAARARAKAMEQTMWDGRSALWRDLLLPTGE 741
             AG SGACHELAAAAESGWDFSSRWAGLSSR RS+STAASSE RDKS   ME +    EEEG AFRL  TATTSVVPVDLNAFLHRAELNIARLHHALAGHRTNRK+A SSSE A      +  T  PTMPPLLSL+GIQRRFLSRRRCSMKSWSSMSSTLMEKLARQGELGFGSEEADTTSPTASGG  XX   LGLESRPLSRKAMLFAAAARARAKAMEQTMWDGRSA WRDLLLPTGE
Sbjct:    6 AAGLSGACHELAAAAESGWDFSSRWAGLSSRGRSASTAASSEDRDKSTXXMEGEDXXXEEEGGAFRLSATATTSVVPVDLNAFLHRAELNIARLHHALAGHRTNRKQASSSSETA------VDPTPPPTMPPLLSLNGIQRRFLSRRRCSMKSWSSMSSTLMEKLARQGELGFGSEEADTTSPTASGGSXXXX--LGLESRPLSRKAMLFAAAARARAKAMEQTMWDGRSAFWRDLLLPTGE 239
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BLAST of mRNA_E-fasciculatus_F_contig14097.2993.1 vs. uniprot
Match: A0A6H5JSC8_9PHAE (Alpha,alpha-trehalase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC8_9PHAE)

HSP 1 Score: 330 bits (847), Expect = 2.210e-104
Identity = 193/242 (79.75%), Postives = 198/242 (81.82%), Query Frame = 1 
Query:   16 VAGFSGACHELAAAAESGWDFSSRWAGLSSRERSSSTAASSEGRDKSMSSMEEDGEQGEEEGEAFRLCETATTSVVPVDLNAFLHRAELNIARLHHALAGHRTNRKEAGSSSEAAAAEDGHLTLTTLPTMPPLLSLDGIQRRFLSRRRCSMKSWSSMSSTLMEKLARQGELGFGSEEADTTSPTASGGGSXXDGGLGLESRPLSRKAMLFAAAARARAKAMEQTMWDGRSALWRDLLLPTGE 741
             AG SGACHELAAAAESGWDFSSRWAGLSSR R++STAASSE RDKS  S           G+AFRL  TATTSVVPVDLNAFLHRAELNIARLHHALAGHRTNRKE  SS  +   +D      T PTMPPLLSLD IQRRFL RR CSMKSWSSMSSTLMEKL RQGEL FGSEEADTTSPTASGGG   DGGLGLESR LSRK MLFAAAARARAKAMEQTMWDGRSA WRDLLLPTGE
Sbjct:  453 AAGLSGACHELAAAAESGWDFSSRWAGLSSRGRTASTAASSEDRDKSTLSXXXXXXXXXXXGDAFRLSATATTSVVPVDLNAFLHRAELNIARLHHALAGHRTNRKEPVSSETS---DD-----PTPPTMPPLLSLDEIQRRFLCRRHCSMKSWSSMSSTLMEKLTRQGELEFGSEEADTTSPTASGGG---DGGLGLESRALSRKVMLFAAAARARAKAMEQTMWDGRSAFWRDLLLPTGE 683
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BLAST of mRNA_E-fasciculatus_F_contig14097.2993.1 vs. uniprot
Match: A0A4Q3QI18_9BURK (Alpha,alpha-trehalase TreF n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A4Q3QI18_9BURK)

HSP 1 Score: 54.7 bits (130), Expect = 5.420e-5
Identity = 36/85 (42.35%), Postives = 43/85 (50.59%), Query Frame = 1 
Query:   43 ELAAAAESGWDFSSRWAGLSSRERSSSTAASSEGRDKSMSSMEEDGEQGEEEGEAFRLCETATTSVVPVDLNAFLHRAELNIARL 297
            +L AAAESGWDFSSRWA            +   GRD+ +                  LC   TTS+VPVDLNA LH+ E  +ARL
Sbjct:  287 DLRAAAESGWDFSSRWAD-----------SQESGRDRKV-----------------MLCGLRTTSIVPVDLNALLHKLETTVARL 343
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14097.2993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G6T3_ECTSI4.970e-11884.30Alpha,alpha-trehalase n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JSC8_9PHAE2.210e-10479.75Alpha,alpha-trehalase n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A4Q3QI18_9BURK5.420e-542.35Alpha,alpha-trehalase TreF n=1 Tax=Comamonadaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14097contigE-fasciculatus_F_contig14097:2489..3229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score357.5
Seed ortholog evalue5.2e-96
Seed eggNOG ortholog2880.D7G6T3
KEGG rclassRC00049
KEGG koko:K01194
KEGG ReactionR00010
KEGG Pathwayko00500,ko01100,map00500,map01100
GOsGO:0003674,GO:0003824,GO:0004553,GO:0004555,GO:0005575,GO:0005623,GO:0005886,GO:0005975,GO:0005984,GO:0005991,GO:0005993,GO:0008150,GO:0008152,GO:0009056,GO:0009311,GO:0009313,GO:0009987,GO:0015927,GO:0016020,GO:0016052,GO:0016787,GO:0016798,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044275,GO:0044464,GO:0046352,GO:0071704,GO:0071944,GO:1901575
EggNOG free text desc.alpha,alpha-trehalase activity
EggNOG OGsCOG1626@1,KOG0602@2759
EC3.2.1.28
COG Functional cat.G
CAZyGH37
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00537,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTrehalase C-terminal fragment, family GH37
Ec32 orthologEc-00_010170.1
Exons1
Model size741
Cds size741
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927899.5619168-CDS-E-fasciculatus_F_contig14097:2488..32291622927899.5619168-CDS-E-fasciculatus_F_contig14097:2488..3229Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14097 2489..3229 +
1695995744.0715835-CDS-E-fasciculatus_F_contig14097:2488..32291695995744.0715835-CDS-E-fasciculatus_F_contig14097:2488..3229Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14097 2489..3229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14097.2993.1prot_E-fasciculatus_F_contig14097.2993.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14097 2489..3229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14097.2993.1

>prot_E-fasciculatus_F_contig14097.2993.1 ID=prot_E-fasciculatus_F_contig14097.2993.1|Name=mRNA_E-fasciculatus_F_contig14097.2993.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=247bp
VAGEGVAGFSGACHELAAAAESGWDFSSRWAGLSSRERSSSTAASSEGRD
KSMSSMEEDGEQGEEEGEAFRLCETATTSVVPVDLNAFLHRAELNIARLH
HALAGHRTNRKEAGSSSEAAAAEDGHLTLTTLPTMPPLLSLDGIQRRFLS
RRRCSMKSWSSMSSTLMEKLARQGELGFGSEEADTTSPTASGGGSGGDGG
LGLESRPLSRKAMLFAAAARARAKAMEQTMWDGRSALWRDLLLPTGE
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mRNA from alignment at E-fasciculatus_F_contig14097:2489..3229+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14097.2993.1 ID=mRNA_E-fasciculatus_F_contig14097.2993.1|Name=mRNA_E-fasciculatus_F_contig14097.2993.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=741bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14097:2489..3229+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCGCCGGCGAGGGGGTGGCGGGATTCAGCGGGGCGTGCCACGAGCTTGC
CGCCGCGGCGGAGTCAGGGTGGGACTTCAGCTCCCGGTGGGCCGGGCTGT
CGTCGAGGGAAAGGAGTTCGTCGACGGCGGCATCATCGGAGGGCAGGGAC
AAGAGCATGTCATCTATGGAGGAGGACGGGGAACAGGGGGAGGAGGAGGG
CGAGGCGTTCCGTCTTTGCGAGACCGCGACTACCTCTGTGGTTCCCGTAG
ACCTCAACGCCTTCTTGCACCGGGCGGAGCTGAACATCGCCCGGCTTCAC
CACGCGCTGGCGGGCCACCGCACGAACAGGAAAGAGGCGGGCTCTTCTTC
GGAGGCCGCCGCCGCCGAGGATGGTCATCTGACTCTGACAACACTGCCGA
CGATGCCGCCGCTTTTGTCCCTGGATGGGATCCAGCGGAGGTTCCTATCC
CGCCGCCGGTGCAGCATGAAGTCCTGGTCGTCGATGTCCAGCACCCTCAT
GGAGAAACTTGCTCGCCAGGGGGAGCTGGGCTTTGGGTCTGAGGAGGCGG
ACACGACGTCGCCAACGGCATCCGGCGGCGGCAGCGGCGGCGACGGCGGG
TTGGGGTTAGAGAGCCGGCCGTTAAGCCGGAAGGCGATGCTCTTCGCGGC
GGCGGCTCGGGCGAGGGCGAAGGCTATGGAGCAGACCATGTGGGACGGGA
GGTCGGCGCTCTGGAGGGACCTCCTGCTGCCGACAGGTGAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14097:2489..3229+

>mRNA_E-fasciculatus_F_contig14097.2993.1 ID=mRNA_E-fasciculatus_F_contig14097.2993.1|Name=mRNA_E-fasciculatus_F_contig14097.2993.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1482bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14097:2489..3229+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCGCCGGCGAGGGGGTGGCGGGATTCAGCGGGGCGTGCCACGAGCTTGC
CGCCGCGGCGGAGTCAGGGTGGGACTTCAGCTCCCGGTGGGCCGGGCTGT
CGTCGAGGGAAAGGAGTTCGTCGACGGCGGCATCATCGGAGGGCAGGGAC
AAGAGCATGTCATCTATGGAGGAGGACGGGGAACAGGGGGAGGAGGAGGG
CGAGGCGTTCCGTCTTTGCGAGACCGCGACTACCTCTGTGGTTCCCGTAG
ACCTCAACGCCTTCTTGCACCGGGCGGAGCTGAACATCGCCCGGCTTCAC
CACGCGCTGGCGGGCCACCGCACGAACAGGAAAGAGGCGGGCTCTTCTTC
GGAGGCCGCCGCCGCCGAGGATGGTCATCTGACTCTGACAACACTGCCGA
CGATGCCGCCGCTTTTGTCCCTGGATGGGATCCAGCGGAGGTTCCTATCC
CGCCGCCGGTGCAGCATGAAGTCCTGGTCGTCGATGTCCAGCACCCTCAT
GGAGAAACTTGCTCGCCAGGGGGAGCTGGGCTTTGGGTCTGAGGAGGCGG
ACACGACGTCGCCAACGGCATCCGGCGGCGGCAGCGGCGGCGACGGCGGG
TTGGGGTTAGAGAGCCGGCCGTTAAGCCGGAAGGCGATGCTCTTCGCGGC
GGCGGCTCGGGCGAGGGCGAAGGCTATGGAGCAGACCATGTGGGACGGGA
GGTCGGCGCTCTGGAGGGACCTCCTGCTGCCGACAGGTGAAGTCGCCGGC
GAGGGGGTGGCGGGATTCAGCGGGGCGTGCCACGAGCTTGCCGCCGCGGC
GGAGTCAGGGTGGGACTTCAGCTCCCGGTGGGCCGGGCTGTCGTCGAGGG
AAAGGAGTTCGTCGACGGCGGCATCATCGGAGGGCAGGGACAAGAGCATG
TCATCTATGGAGGAGGACGGGGAACAGGGGGAGGAGGAGGGCGAGGCGTT
CCGTCTTTGCGAGACCGCGACTACCTCTGTGGTTCCCGTAGACCTCAACG
CCTTCTTGCACCGGGCGGAGCTGAACATCGCCCGGCTTCACCACGCGCTG
GCGGGCCACCGCACGAACAGGAAAGAGGCGGGCTCTTCTTCGGAGGCCGC
CGCCGCCGAGGATGGTCATCTGACTCTGACAACACTGCCGACGATGCCGC
CGCTTTTGTCCCTGGATGGGATCCAGCGGAGGTTCCTATCCCGCCGCCGG
TGCAGCATGAAGTCCTGGTCGTCGATGTCCAGCACCCTCATGGAGAAACT
TGCTCGCCAGGGGGAGCTGGGCTTTGGGTCTGAGGAGGCGGACACGACGT
CGCCAACGGCATCCGGCGGCGGCAGCGGCGGCGACGGCGGGTTGGGGTTA
GAGAGCCGGCCGTTAAGCCGGAAGGCGATGCTCTTCGCGGCGGCGGCTCG
GGCGAGGGCGAAGGCTATGGAGCAGACCATGTGGGACGGGAGGTCGGCGC
TCTGGAGGGACCTCCTGCTGCCGACAGGTGAA
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