mRNA_E-fasciculatus_F_contig14094.2992.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14094.2992.1 vs. uniprot
Match: A0A6H5KHD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD4_9PHAE) HSP 1 Score: 646 bits (1667), Expect = 4.360e-212 Identity = 451/656 (68.75%), Postives = 467/656 (71.19%), Query Frame = 1
Query: 1 QVCTFLAPLLQEGLVKAHAEAVCDLPGLGKFAEVPLMLSIEIEEGLFALDPEEELYRNAYCLLQFAHTGHIDQEQPKSQQAAPA--EKGKADHQQAQKPLTMQERNGEGQQEEEXXDVREEDVKELYDDETQLCEMPEARDPRLFVDGLALRRYQRQALAWMIQREKKRYVTEEDCTGLSSAVAVGAGEGAAXXXXXXXXXX----VTIRDGRVRVASWGGASSANTKQGGSGDCGGGAGVAMHPLWERRAAASV---VVRKEASGDCLGLFGGNGAEGDXXXXXXXXXXDKGAPQLVLSQPEAFFVNVYSRRFQRKFPPASLGCRGGILADEMGMGKTVMLLSLILSDKERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDALATADLPRXXXXXXXXXXEAVPXXXXXXXXXXXXXXXXXXXXXXXXRLDVSSSDGG--SSGGESDFMPTPESSDGGXXXXXXXXXXXXXXXXDSDFEPIADNGKSRAVAANGGPPKRRRGETGKRVGGANGKGRXXXXXXXXXXAGSDPSALLLDPYAVGAQGSNGAERVASGRGAGKGGGTLVVCPLSLIGQWRGELESKTRKGAITVGFHYGAGRSR 1935
+VC FLAPLLQEGL KAHAEAVCDLPGLGKFAEVPLMLSIEIEEGLFALDP+EELYR+AYCLLQFAHTGHI+QEQPKSQQAA A EKGKADHQQA++ L +ERN XX VREED+KELY+DETQLCEMPEARDPRLFVDGLALRRYQRQALAWMIQREKKRYVTEEDCTGLS+ A XXXXXXXXXX V IRDGRVRVASWGGASS NTKQGGS DCGGG GVAMHPLWERRAAAS+ VVRKEASGD L LFG +G + +KG PQLVLSQPEAFFVNVYSRRFQR+FPPASLGCRGGILADEMGMGKTVMLLSLILSDKERXXXXXXXX XXXXXXXX XXX DALA ADLP EAVP XXXXXXXXX LDVS SS GESDFM TPES XXXXXXXXXX EP A GKSRAVAANGGP KRRRGETGKRVG ANGKG AG DPSALLLDPYAVGAQ SNG ERVASGRGAGKGGGTLVVCPLSLIGQWRGELESKTRKGAI+VGFHYGAGRSR
Sbjct: 276 EVCAFLAPLLQEGLAKAHAEAVCDLPGLGKFAEVPLMLSIEIEEGLFALDPDEELYRSAYCLLQFAHTGHIEQEQPKSQQAAAAAAEKGKADHQQAERTLAKEERNXXXXXXXXXXXVREEDLKELYNDETQLCEMPEARDPRLFVDGLALRRYQRQALAWMIQREKKRYVTEEDCTGLSTVTAAXXXXXXXXXXXXXXXXXXXXDVAIRDGRVRVASWGGASSVNTKQGGSADCGGGPGVAMHPLWERRAAASIASIVVRKEASGDSLDLFGDSGMDDGDDGDNARSGEEKGTPQLVLSQPEAFFVNVYSRRFQREFPPASLGCRGGILADEMGMGKTVMLLSLILSDKERXXXXXXXXNGVXXXXXXXXGEKGQEEGEGPATVGRDSSLVVCLDDXXXGDSASAAEHDFNGKPKLGSGGPGGLNAAVSSPE--DALAIADLPSRGKRRSPAVTEAVPSLAGSVAAGTKRXXXXXXXXX----LDVSXXXXXXXSSDGESDFMLTPES----------XXXXXXXXXXXXXXEPTAGKGKSRAVAANGGPSKRRRGETGKRVG-ANGKGCSGGGRWGGGKAGFDPSALLLDPYAVGAQESNGGERVASGRGAGKGGGTLVVCPLSLIGQWRGELESKTRKGAISVGFHYGAGRSR 914
BLAST of mRNA_E-fasciculatus_F_contig14094.2992.1 vs. uniprot
Match: D7FJC4_ECTSI (DNA repair helicase rad5,16, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC4_ECTSI) HSP 1 Score: 520 bits (1339), Expect = 2.470e-172 Identity = 419/651 (64.36%), Postives = 432/651 (66.36%), Query Frame = 1
Query: 1 QVCTFLAPLLQEGLVKAHAEAVCDLPGLGKFAEVPLMLSIEIEEGLFALDPEEELYRNAYCLLQFAHTGHIDQEQPKSQQA--APAEKGKAD-HQQAQKPLTMQERNGEGQQEEEXXDVREEDVKELYDDETQLCEMPEARDPRLFVDGLALRRYQRQALAWMIQREKKRYVTEEDCTGLSSAVAVGAGEGAAXXXXXXXXXX--VTIRDGRVRVASWGGASSANTKQGGSGDCGGGAGVAMHPLWERRAAASVVVRKEASGDCLGLFGGNGAEGDXXXXXXXXXXDKGAPQLVLSQPEAFFVNVYSRRFQRKFPPASLGCRGGILADEMGMGKTVMLLSLILSDKERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-DALATADLPRXXXXXXXXXXEAVPXXXXXXXXXXXXXXXXXXXXXXXXRLDVSSSDGGSSGGESDFMPTPESSDGGXXXXXXXXXXXXXXXXDSDFEPIADNGKSRAVAANGGPPKRRRGETGKRVGGANGKGRXXXXXXXXXXAGSDPSALLLDPYAVGAQGSNGAERVASGRGAGKGGGTLVVCPLSLIGQWRGELESKTRKGAITVGFHYGAGRSR 1935
+VC FLAPLLQEGLVKAHAEAVCDLPGLGKFAEVPLMLSIEIEEGLFAL+PEEELYRNAYCLLQFAHTGHI+QEQPKSQQA A AEKGKAD HQQA+K L XX VREEDVKELYDDETQLCEMPEARDPRLFVDGLALRRYQRQALAWMIQREKKRYVTEEDCTGLSS A XXXXXXXXXX V IRDGRVRVASWGGASS NTKQGGSGDCGGG GVAMHPLWERRAAAS+VVRKEASGDCL LFGG+G XXXXXXXXXXD APQLVLSQPEAFFVNVYSRRFQR+FPPASLGCRGGILADEMGMGKTVMLLSLILSDKE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DALA ADLP EAVP SS G +VAA + LD + + G +RVA GRG GKGGGTLVVCPLSLIGQWRGELESKTRKGAI+VGFHYGAGRSR
Sbjct: 20 EVCAFLAPLLQEGLVKAHAEAVCDLPGLGKFAEVPLMLSIEIEEGLFALEPEEELYRNAYCLLQFAHTGHIEQEQPKSQQAVAAAAEKGKADDHQQAEKTLAKXXXXXXXXXXXXXXXVREEDVKELYDDETQLCEMPEARDPRLFVDGLALRRYQRQALAWMIQREKKRYVTEEDCTGLSSVTAXXXXXXXXXXXXXXXXXXXXVAIRDGRVRVASWGGASS-NTKQGGSGDCGGGPGVAMHPLWERRAAASIVVRKEASGDCLDLFGGSGMGDXXXXXXXXXXXDNRAPQLVLSQPEAFFVNVYSRRFQREFPPASLGCRGGILADEMGMGKTVMLLSLILSDKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSANAAEHVSKGKQKLGSGGPGGRNAATSSPEDALANADLPSRGKRRSPAVTEAVP----------------------------------SSAG--------------------------------------------SVAAG------------------------------MKRXXXXXXXVRLD------ESNGGGKRVARGRGVGKGGGTLVVCPLSLIGQWRGELESKTRKGAISVGFHYGAGRSR 555
BLAST of mRNA_E-fasciculatus_F_contig14094.2992.1 vs. uniprot
Match: A0A836CF42_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF42_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 2.050e-13 Identity = 129/453 (28.48%), Postives = 164/453 (36.20%), Query Frame = 1
Query: 4 VCTFLAPLLQEGLVKAHAEAVCDLPGLGKFAEVPLMLSIEIEEGLFALDPEE--ELYRNAYCLLQFAHTGHIDQ-------------------------EQPKSQQAAPAEKG----------KADHQQAQKPLTMQERNGEGQQEEEXXDVREEDVKELYDDETQLCEMPEARDPRLFVDGLALRRYQRQALAWMIQREKKRYVTEEDCTG--------------------------------------------------------LSSAVAVGAGEGAAXXXXXXXXXXVTIRDGRVRVASWGGASSANTKQGGSGD---CGGGAGV-----------------AMHPLWERRAAASVVVRKEASGDCLGLFGGNGAEGDXXXXXXXXXXDKGAPQLVLSQPEAFFVNVYSRRFQRKFPPASLGCRGGILADEMGMGKTVMLLSLILSDK 1023
+C LAPLL+ GL++ A + F+ VPL+L + + GLFA D L A+ LL F TG +D K+ +AA A G K D Q + L+ E +PEA DP + GL+LRRYQRQALAWM++RE+ +T G VG A XXXXXXXXXX + + V + S G A + T+ + D C GV AMHPLWER A+V EGD P F++N +SRR Q FPPA+ CRGG+L DEMGMGKTVMLLSLIL+DK
Sbjct: 245 LCGALAPLLEAGLMEIAARCALPVASTAHFSRVPLLLRVAVRPGLFAFDAARAPRLSAAAFQLLLFGATGEVDPGALPPPEAXXXXXXXXXXXXXXXXXXXXKALRAAAAHSGDEAGADGAEAKVDAAQVESLLSTMEPRA----------------------------LPEAPDPPQ-LRGLSLRRYQRQALAWMLERER---ITHNSSAGGTXXXXXXXXXXXXXXXXXXXXXXXXNGSXXXXXXXXXXXSXXXXXXXXXXXXXXXXXXXXIVGENGSAXXXXXXXXXXXXSASEDVVIIGS-GQAGATATRAAAADDGAPCRVSGGVVRADGXXXXXXXDEGEGAMHPLWERHFLATV-------------------EGDGRAH----------------SPVPFYLNKFSRRCQLAFPPAARRCRGGMLCDEMGMGKTVMLLSLILADK 629
BLAST of mRNA_E-fasciculatus_F_contig14094.2992.1 vs. uniprot
Match: A0A7R9UCR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCR3_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 5.050e-13 Identity = 102/353 (28.90%), Postives = 146/353 (41.36%), Query Frame = 1
Query: 1 QVCTFLAPLLQEGLVKAHAEAVCDLPGLGKFAEVPLMLSIEIEEGLFALDPEEELYRNAYCLLQFAHTGHIDQEQPKSQQAAPAEKGKADHQQAQKPLTMQERNGEGQQEEEXXDVRE---EDVKELYDDE---TQLCEMPEARDPRLFVDGLALRRYQRQALAWMIQRE---KKRYVTE--EDCTGLSSAVAVGAGEGAAXXXXXXXXXXVTIRDGRVRVASWGGASSANTKQGGSGDCGGGAGVAMHPLWERRAAASVVVRKEASGDCLGLFGGNGAEGDXXXXXXXXXXDKGAPQ-LVLSQPEAFFVNVYSRRFQRKFPPASLGCRGGILADEMGMGKTVMLLSLILSDK 1023
+V FL L+++G V+ A A+ +P +G F +V + L + +F P E N + ++ G + P + +A A+ PL N +G EE E ED++ + DD +P P V GL ++ YQRQAL W+ +RE + + E ED L+S G+ G + DG V+V GD G ++P+W AS + +E G L APQ L L P F+VN Y++ PPA C+GGILADEMGMGKT+ LLSLIL DK
Sbjct: 278 EVSWFLPELVRKGHVEIVARALETVPRVGHFTKVAVQLVFFVGSSMFQEPPRSESVYNFFQFIKHGVEGV----------SVPTQLAQAAESTAESPLATHPDNDDGSDSEEPEAGAERVAEDMEGVVDDVYGGVARRSLPLTEQPSQLV-GLTMKTYQRQALHWLYKRETDPESAVIIEVAEDGKVLTSVRNNGSRTGKTTTCR--------VVDGEVQV---------------QGDLSGLLPELVNPMWRPCFLAS--LNEEMPGSVLH-----------------------APQELDLVSPFVFYVNKYTKAVSVAPPPAPQPCKGGILADEMGMGKTIELLSLILHDK 571
BLAST of mRNA_E-fasciculatus_F_contig14094.2992.1 vs. uniprot
Match: UPI00098E5E09 (transcription termination factor 2-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E5E09) HSP 1 Score: 55.8 bits (133), Expect = 6.050e-6 Identity = 22/39 (56.41%), Postives = 32/39 (82.05%), Query Frame = 1
Query: 1816 GGTLVVCPLSLIGQWRGELESKTRKGAITVGFHYGAGRS 1932
GGTL+VCP++L+GQW+ ELE+ +R G+I+V HYG R+
Sbjct: 29 GGTLIVCPMALLGQWKDELETHSRPGSISVFIHYGCDRT 67
BLAST of mRNA_E-fasciculatus_F_contig14094.2992.1 vs. uniprot
Match: A0A392Q214_9FABA (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392Q214_9FABA) HSP 1 Score: 53.9 bits (128), Expect = 2.130e-5 Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 1
Query: 889 FVNVYSRRFQRKFPPASLGCRGGILADEMGMGKTVMLLSLILSDKER 1029
+VN+++ +KFP A+ RGGILAD MG+GKTVM ++LILS+ R
Sbjct: 4 YVNIFTGEAAKKFPQATQMARGGILADAMGLGKTVMTIALILSNPGR 50
BLAST of mRNA_E-fasciculatus_F_contig14094.2992.1 vs. uniprot
Match: A0A7S4MFN1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MFN1_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 2.220e-5 Identity = 75/216 (34.72%), Postives = 87/216 (40.28%), Query Frame = 1
Query: 415 DPRLFVD-GLALRRYQRQALAWMIQREKKRYVTEEDCTGLSSAVAVGAGEGAAXXXXXXXXXXVTIRDGRVRVASWGGASSANTKQGG---SGDCGGGAGVAM--------HPLWERRAAASVVVRKEASGDCLGLFGGNGAEGDXXXXXXXXXXDKGAPQLVLSQPEAFFVNVYSRRFQRKFPPASLGCRGGILADEMGMGKTVMLLSLILSDKE 1026
DP FV GL LR YQRQAL WM RE + L + G+ XXXXXX T D G + + +G S D G A+ HPLW+RR A+ G GGN L P AF+VN P CRGGILAD MG+GKTVMLL+LIL DKE
Sbjct: 206 DPSGFVQPGLELRPYQRQALHWMHSRENDSQNADTVRRELEFLSELHVATGSNKGGGXXXXXXTTPVDASYPFPEADGGNGVSCDRGPVTVSPDYSVGTIPALDGTLDPHVHPLWKRRYLAADADSTSGEG------GGN-----------------------LHFPVAFYVNELLGTASATPPHPPKQCRGGILADAMGLGKTVMLLALILRDKE 392
BLAST of mRNA_E-fasciculatus_F_contig14094.2992.1 vs. uniprot
Match: A0A2K3MG20_TRIPR (Putative DNA repair helicase rad516 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MG20_TRIPR) HSP 1 Score: 56.6 bits (135), Expect = 2.920e-5 Identity = 21/39 (53.85%), Postives = 33/39 (84.62%), Query Frame = 1
Query: 1816 GGTLVVCPLSLIGQWRGELESKTRKGAITVGFHYGAGRS 1932
GGTL+VCP++L+GQW+ ELE+ ++ G+I++ HYG GR+
Sbjct: 169 GGTLIVCPMALLGQWKDELETHSKPGSISIFVHYGGGRT 207
BLAST of mRNA_E-fasciculatus_F_contig14094.2992.1 vs. uniprot
Match: A0A1V9ZG98_9STRA (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZG98_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 2.920e-5 Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query: 874 QPEAFFVNVYSRRFQRKFPPASLGCRGGILADEMGMGKTVMLLSLILSDK 1023
QP ++VNV+ R + PP + CRGGILAD+MGMGKT+M+L+L+ + K
Sbjct: 377 QPVPYYVNVFERLASLQPPPPPVPCRGGILADDMGMGKTIMVLALVAARK 426
BLAST of mRNA_E-fasciculatus_F_contig14094.2992.1 vs. uniprot
Match: A0A448Z872_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z872_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 3.140e-5 Identity = 59/209 (28.23%), Postives = 87/209 (41.63%), Query Frame = 1
Query: 418 PRLFVDGLALRRYQRQALAWMIQREKKRYVTEEDCTGLSSAVAVGAGEGAAXXXXXXXXXXVTIRDGRVRVASWGGASSANTKQGGSGDCGGGAGVAMHPLWERRAAASVVVRKEASGDCL--GLFGGNGAEGDXXXXXXXXXXDKGAPQLVLSQPE----AFFVNVYSRRFQRKFPPASLGCRGGILADEMGMGKTVMLLSLILSDKE 1026
PR F +G+ LR YQ+Q+L WM QREKK ++ L +A + RV + ++G S DCG P+ VV + C+ G + +G+ + + + + +FFV R + PP+ L CRGGILAD MG+GKTV LL+L+ SDK+
Sbjct: 480 PRGFREGIDLRPYQKQSLYWMTQREKKSPSGRKELVRLLQRLA-----------------RESSTTHRVGIQHDDEVCLLGPRKGISCDCG--------PV--------VVDTNQVEAPCIARGFLHESDKDGNEESEDQELDHPLWERRFLCNNHQTKAFSFFVQPSFRNAAPEPPPSPLPCRGGILADSMGLGKTVQLLALVQSDKD 655 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14094.2992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14094.2992.1 >prot_E-fasciculatus_F_contig14094.2992.1 ID=prot_E-fasciculatus_F_contig14094.2992.1|Name=mRNA_E-fasciculatus_F_contig14094.2992.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=645bp QVCTFLAPLLQEGLVKAHAEAVCDLPGLGKFAEVPLMLSIEIEEGLFALDback to top mRNA from alignment at E-fasciculatus_F_contig14094:285..3193+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14094.2992.1 ID=mRNA_E-fasciculatus_F_contig14094.2992.1|Name=mRNA_E-fasciculatus_F_contig14094.2992.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2909bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14094:285..3193+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14094:285..3193+ >mRNA_E-fasciculatus_F_contig14094.2992.1 ID=mRNA_E-fasciculatus_F_contig14094.2992.1|Name=mRNA_E-fasciculatus_F_contig14094.2992.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3870bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14094:285..3193+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |