mRNA_E-fasciculatus_F_contig14094.2992.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14094.2992.1
Unique NamemRNA_E-fasciculatus_F_contig14094.2992.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14094.2992.1 vs. uniprot
Match: A0A6H5KHD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD4_9PHAE)

HSP 1 Score: 646 bits (1667), Expect = 4.360e-212
Identity = 451/656 (68.75%), Postives = 467/656 (71.19%), Query Frame = 1
Query:    1 QVCTFLAPLLQEGLVKAHAEAVCDLPGLGKFAEVPLMLSIEIEEGLFALDPEEELYRNAYCLLQFAHTGHIDQEQPKSQQAAPA--EKGKADHQQAQKPLTMQERNGEGQQEEEXXDVREEDVKELYDDETQLCEMPEARDPRLFVDGLALRRYQRQALAWMIQREKKRYVTEEDCTGLSSAVAVGAGEGAAXXXXXXXXXX----VTIRDGRVRVASWGGASSANTKQGGSGDCGGGAGVAMHPLWERRAAASV---VVRKEASGDCLGLFGGNGAEGDXXXXXXXXXXDKGAPQLVLSQPEAFFVNVYSRRFQRKFPPASLGCRGGILADEMGMGKTVMLLSLILSDKERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDALATADLPRXXXXXXXXXXEAVPXXXXXXXXXXXXXXXXXXXXXXXXRLDVSSSDGG--SSGGESDFMPTPESSDGGXXXXXXXXXXXXXXXXDSDFEPIADNGKSRAVAANGGPPKRRRGETGKRVGGANGKGRXXXXXXXXXXAGSDPSALLLDPYAVGAQGSNGAERVASGRGAGKGGGTLVVCPLSLIGQWRGELESKTRKGAITVGFHYGAGRSR 1935
            +VC FLAPLLQEGL KAHAEAVCDLPGLGKFAEVPLMLSIEIEEGLFALDP+EELYR+AYCLLQFAHTGHI+QEQPKSQQAA A  EKGKADHQQA++ L  +ERN        XX VREED+KELY+DETQLCEMPEARDPRLFVDGLALRRYQRQALAWMIQREKKRYVTEEDCTGLS+  A        XXXXXXXXXX    V IRDGRVRVASWGGASS NTKQGGS DCGGG GVAMHPLWERRAAAS+   VVRKEASGD L LFG +G +            +KG PQLVLSQPEAFFVNVYSRRFQR+FPPASLGCRGGILADEMGMGKTVMLLSLILSDKERXXXXXXXX   XXXXXXXX                          XXX                                   DALA ADLP           EAVP            XXXXXXXXX    LDVS       SS GESDFM TPES          XXXXXXXXXX    EP A  GKSRAVAANGGP KRRRGETGKRVG ANGKG           AG DPSALLLDPYAVGAQ SNG ERVASGRGAGKGGGTLVVCPLSLIGQWRGELESKTRKGAI+VGFHYGAGRSR
Sbjct:  276 EVCAFLAPLLQEGLAKAHAEAVCDLPGLGKFAEVPLMLSIEIEEGLFALDPDEELYRSAYCLLQFAHTGHIEQEQPKSQQAAAAAAEKGKADHQQAERTLAKEERNXXXXXXXXXXXVREEDLKELYNDETQLCEMPEARDPRLFVDGLALRRYQRQALAWMIQREKKRYVTEEDCTGLSTVTAAXXXXXXXXXXXXXXXXXXXXDVAIRDGRVRVASWGGASSVNTKQGGSADCGGGPGVAMHPLWERRAAASIASIVVRKEASGDSLDLFGDSGMDDGDDGDNARSGEEKGTPQLVLSQPEAFFVNVYSRRFQREFPPASLGCRGGILADEMGMGKTVMLLSLILSDKERXXXXXXXXNGVXXXXXXXXGEKGQEEGEGPATVGRDSSLVVCLDDXXXGDSASAAEHDFNGKPKLGSGGPGGLNAAVSSPE--DALAIADLPSRGKRRSPAVTEAVPSLAGSVAAGTKRXXXXXXXXX----LDVSXXXXXXXSSDGESDFMLTPES----------XXXXXXXXXXXXXXEPTAGKGKSRAVAANGGPSKRRRGETGKRVG-ANGKGCSGGGRWGGGKAGFDPSALLLDPYAVGAQESNGGERVASGRGAGKGGGTLVVCPLSLIGQWRGELESKTRKGAISVGFHYGAGRSR 914          
BLAST of mRNA_E-fasciculatus_F_contig14094.2992.1 vs. uniprot
Match: D7FJC4_ECTSI (DNA repair helicase rad5,16, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC4_ECTSI)

HSP 1 Score: 520 bits (1339), Expect = 2.470e-172
Identity = 419/651 (64.36%), Postives = 432/651 (66.36%), Query Frame = 1
Query:    1 QVCTFLAPLLQEGLVKAHAEAVCDLPGLGKFAEVPLMLSIEIEEGLFALDPEEELYRNAYCLLQFAHTGHIDQEQPKSQQA--APAEKGKAD-HQQAQKPLTMQERNGEGQQEEEXXDVREEDVKELYDDETQLCEMPEARDPRLFVDGLALRRYQRQALAWMIQREKKRYVTEEDCTGLSSAVAVGAGEGAAXXXXXXXXXX--VTIRDGRVRVASWGGASSANTKQGGSGDCGGGAGVAMHPLWERRAAASVVVRKEASGDCLGLFGGNGAEGDXXXXXXXXXXDKGAPQLVLSQPEAFFVNVYSRRFQRKFPPASLGCRGGILADEMGMGKTVMLLSLILSDKERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-DALATADLPRXXXXXXXXXXEAVPXXXXXXXXXXXXXXXXXXXXXXXXRLDVSSSDGGSSGGESDFMPTPESSDGGXXXXXXXXXXXXXXXXDSDFEPIADNGKSRAVAANGGPPKRRRGETGKRVGGANGKGRXXXXXXXXXXAGSDPSALLLDPYAVGAQGSNGAERVASGRGAGKGGGTLVVCPLSLIGQWRGELESKTRKGAITVGFHYGAGRSR 1935
            +VC FLAPLLQEGLVKAHAEAVCDLPGLGKFAEVPLMLSIEIEEGLFAL+PEEELYRNAYCLLQFAHTGHI+QEQPKSQQA  A AEKGKAD HQQA+K L              XX VREEDVKELYDDETQLCEMPEARDPRLFVDGLALRRYQRQALAWMIQREKKRYVTEEDCTGLSS  A        XXXXXXXXXX  V IRDGRVRVASWGGASS NTKQGGSGDCGGG GVAMHPLWERRAAAS+VVRKEASGDCL LFGG+G    XXXXXXXXXXD  APQLVLSQPEAFFVNVYSRRFQR+FPPASLGCRGGILADEMGMGKTVMLLSLILSDKE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                               DALA ADLP           EAVP                                  SS G                                            +VAA                                         + LD      + + G +RVA GRG GKGGGTLVVCPLSLIGQWRGELESKTRKGAI+VGFHYGAGRSR
Sbjct:   20 EVCAFLAPLLQEGLVKAHAEAVCDLPGLGKFAEVPLMLSIEIEEGLFALEPEEELYRNAYCLLQFAHTGHIEQEQPKSQQAVAAAAEKGKADDHQQAEKTLAKXXXXXXXXXXXXXXXVREEDVKELYDDETQLCEMPEARDPRLFVDGLALRRYQRQALAWMIQREKKRYVTEEDCTGLSSVTAXXXXXXXXXXXXXXXXXXXXVAIRDGRVRVASWGGASS-NTKQGGSGDCGGGPGVAMHPLWERRAAASIVVRKEASGDCLDLFGGSGMGDXXXXXXXXXXXDNRAPQLVLSQPEAFFVNVYSRRFQREFPPASLGCRGGILADEMGMGKTVMLLSLILSDKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSANAAEHVSKGKQKLGSGGPGGRNAATSSPEDALANADLPSRGKRRSPAVTEAVP----------------------------------SSAG--------------------------------------------SVAAG------------------------------MKRXXXXXXXVRLD------ESNGGGKRVARGRGVGKGGGTLVVCPLSLIGQWRGELESKTRKGAISVGFHYGAGRSR 555          
BLAST of mRNA_E-fasciculatus_F_contig14094.2992.1 vs. uniprot
Match: A0A836CF42_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF42_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.050e-13
Identity = 129/453 (28.48%), Postives = 164/453 (36.20%), Query Frame = 1
Query:    4 VCTFLAPLLQEGLVKAHAEAVCDLPGLGKFAEVPLMLSIEIEEGLFALDPEE--ELYRNAYCLLQFAHTGHIDQ-------------------------EQPKSQQAAPAEKG----------KADHQQAQKPLTMQERNGEGQQEEEXXDVREEDVKELYDDETQLCEMPEARDPRLFVDGLALRRYQRQALAWMIQREKKRYVTEEDCTG--------------------------------------------------------LSSAVAVGAGEGAAXXXXXXXXXXVTIRDGRVRVASWGGASSANTKQGGSGD---CGGGAGV-----------------AMHPLWERRAAASVVVRKEASGDCLGLFGGNGAEGDXXXXXXXXXXDKGAPQLVLSQPEAFFVNVYSRRFQRKFPPASLGCRGGILADEMGMGKTVMLLSLILSDK 1023
            +C  LAPLL+ GL++  A     +     F+ VPL+L + +  GLFA D      L   A+ LL F  TG +D                             K+ +AA A  G          K D  Q +  L+  E                               +PEA DP   + GL+LRRYQRQALAWM++RE+   +T     G                                                              VG    A XXXXXXXXXX +  +  V + S G A +  T+   + D   C    GV                 AMHPLWER   A+V                   EGD                     P  F++N +SRR Q  FPPA+  CRGG+L DEMGMGKTVMLLSLIL+DK
Sbjct:  245 LCGALAPLLEAGLMEIAARCALPVASTAHFSRVPLLLRVAVRPGLFAFDAARAPRLSAAAFQLLLFGATGEVDPGALPPPEAXXXXXXXXXXXXXXXXXXXXKALRAAAAHSGDEAGADGAEAKVDAAQVESLLSTMEPRA----------------------------LPEAPDPPQ-LRGLSLRRYQRQALAWMLERER---ITHNSSAGGTXXXXXXXXXXXXXXXXXXXXXXXXNGSXXXXXXXXXXXSXXXXXXXXXXXXXXXXXXXXIVGENGSAXXXXXXXXXXXXSASEDVVIIGS-GQAGATATRAAAADDGAPCRVSGGVVRADGXXXXXXXDEGEGAMHPLWERHFLATV-------------------EGDGRAH----------------SPVPFYLNKFSRRCQLAFPPAARRCRGGMLCDEMGMGKTVMLLSLILADK 629          
BLAST of mRNA_E-fasciculatus_F_contig14094.2992.1 vs. uniprot
Match: A0A7R9UCR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCR3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 5.050e-13
Identity = 102/353 (28.90%), Postives = 146/353 (41.36%), Query Frame = 1
Query:    1 QVCTFLAPLLQEGLVKAHAEAVCDLPGLGKFAEVPLMLSIEIEEGLFALDPEEELYRNAYCLLQFAHTGHIDQEQPKSQQAAPAEKGKADHQQAQKPLTMQERNGEGQQEEEXXDVRE---EDVKELYDDE---TQLCEMPEARDPRLFVDGLALRRYQRQALAWMIQRE---KKRYVTE--EDCTGLSSAVAVGAGEGAAXXXXXXXXXXVTIRDGRVRVASWGGASSANTKQGGSGDCGGGAGVAMHPLWERRAAASVVVRKEASGDCLGLFGGNGAEGDXXXXXXXXXXDKGAPQ-LVLSQPEAFFVNVYSRRFQRKFPPASLGCRGGILADEMGMGKTVMLLSLILSDK 1023
            +V  FL  L+++G V+  A A+  +P +G F +V + L   +   +F   P  E   N +  ++    G           + P +  +A    A+ PL     N +G   EE     E   ED++ + DD         +P    P   V GL ++ YQRQAL W+ +RE   +   + E  ED   L+S    G+  G              + DG V+V                GD  G     ++P+W     AS  + +E  G  L                        APQ L L  P  F+VN Y++      PPA   C+GGILADEMGMGKT+ LLSLIL DK
Sbjct:  278 EVSWFLPELVRKGHVEIVARALETVPRVGHFTKVAVQLVFFVGSSMFQEPPRSESVYNFFQFIKHGVEGV----------SVPTQLAQAAESTAESPLATHPDNDDGSDSEEPEAGAERVAEDMEGVVDDVYGGVARRSLPLTEQPSQLV-GLTMKTYQRQALHWLYKRETDPESAVIIEVAEDGKVLTSVRNNGSRTGKTTTCR--------VVDGEVQV---------------QGDLSGLLPELVNPMWRPCFLAS--LNEEMPGSVLH-----------------------APQELDLVSPFVFYVNKYTKAVSVAPPPAPQPCKGGILADEMGMGKTIELLSLILHDK 571          
BLAST of mRNA_E-fasciculatus_F_contig14094.2992.1 vs. uniprot
Match: UPI00098E5E09 (transcription termination factor 2-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E5E09)

HSP 1 Score: 55.8 bits (133), Expect = 6.050e-6
Identity = 22/39 (56.41%), Postives = 32/39 (82.05%), Query Frame = 1
Query: 1816 GGTLVVCPLSLIGQWRGELESKTRKGAITVGFHYGAGRS 1932
            GGTL+VCP++L+GQW+ ELE+ +R G+I+V  HYG  R+
Sbjct:   29 GGTLIVCPMALLGQWKDELETHSRPGSISVFIHYGCDRT 67          
BLAST of mRNA_E-fasciculatus_F_contig14094.2992.1 vs. uniprot
Match: A0A392Q214_9FABA (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392Q214_9FABA)

HSP 1 Score: 53.9 bits (128), Expect = 2.130e-5
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 1
Query:  889 FVNVYSRRFQRKFPPASLGCRGGILADEMGMGKTVMLLSLILSDKER 1029
            +VN+++    +KFP A+   RGGILAD MG+GKTVM ++LILS+  R
Sbjct:    4 YVNIFTGEAAKKFPQATQMARGGILADAMGLGKTVMTIALILSNPGR 50          
BLAST of mRNA_E-fasciculatus_F_contig14094.2992.1 vs. uniprot
Match: A0A7S4MFN1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MFN1_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.220e-5
Identity = 75/216 (34.72%), Postives = 87/216 (40.28%), Query Frame = 1
Query:  415 DPRLFVD-GLALRRYQRQALAWMIQREKKRYVTEEDCTGLSSAVAVGAGEGAAXXXXXXXXXXVTIRDGRVRVASWGGASSANTKQGG---SGDCGGGAGVAM--------HPLWERRAAASVVVRKEASGDCLGLFGGNGAEGDXXXXXXXXXXDKGAPQLVLSQPEAFFVNVYSRRFQRKFPPASLGCRGGILADEMGMGKTVMLLSLILSDKE 1026
            DP  FV  GL LR YQRQAL WM  RE      +     L     +    G+     XXXXXX T  D         G +  +  +G    S D   G   A+        HPLW+RR  A+        G      GGN                       L  P AF+VN          P     CRGGILAD MG+GKTVMLL+LIL DKE
Sbjct:  206 DPSGFVQPGLELRPYQRQALHWMHSRENDSQNADTVRRELEFLSELHVATGSNKGGGXXXXXXTTPVDASYPFPEADGGNGVSCDRGPVTVSPDYSVGTIPALDGTLDPHVHPLWKRRYLAADADSTSGEG------GGN-----------------------LHFPVAFYVNELLGTASATPPHPPKQCRGGILADAMGLGKTVMLLALILRDKE 392          
BLAST of mRNA_E-fasciculatus_F_contig14094.2992.1 vs. uniprot
Match: A0A2K3MG20_TRIPR (Putative DNA repair helicase rad516 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MG20_TRIPR)

HSP 1 Score: 56.6 bits (135), Expect = 2.920e-5
Identity = 21/39 (53.85%), Postives = 33/39 (84.62%), Query Frame = 1
Query: 1816 GGTLVVCPLSLIGQWRGELESKTRKGAITVGFHYGAGRS 1932
            GGTL+VCP++L+GQW+ ELE+ ++ G+I++  HYG GR+
Sbjct:  169 GGTLIVCPMALLGQWKDELETHSKPGSISIFVHYGGGRT 207          
BLAST of mRNA_E-fasciculatus_F_contig14094.2992.1 vs. uniprot
Match: A0A1V9ZG98_9STRA (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZG98_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.920e-5
Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:  874 QPEAFFVNVYSRRFQRKFPPASLGCRGGILADEMGMGKTVMLLSLILSDK 1023
            QP  ++VNV+ R    + PP  + CRGGILAD+MGMGKT+M+L+L+ + K
Sbjct:  377 QPVPYYVNVFERLASLQPPPPPVPCRGGILADDMGMGKTIMVLALVAARK 426          
BLAST of mRNA_E-fasciculatus_F_contig14094.2992.1 vs. uniprot
Match: A0A448Z872_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z872_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.140e-5
Identity = 59/209 (28.23%), Postives = 87/209 (41.63%), Query Frame = 1
Query:  418 PRLFVDGLALRRYQRQALAWMIQREKKRYVTEEDCTGLSSAVAVGAGEGAAXXXXXXXXXXVTIRDGRVRVASWGGASSANTKQGGSGDCGGGAGVAMHPLWERRAAASVVVRKEASGDCL--GLFGGNGAEGDXXXXXXXXXXDKGAPQLVLSQPE----AFFVNVYSRRFQRKFPPASLGCRGGILADEMGMGKTVMLLSLILSDKE 1026
            PR F +G+ LR YQ+Q+L WM QREKK     ++   L   +A                   +    RV +           ++G S DCG        P+        VV   +    C+  G    +  +G+               + + +  +    +FFV    R    + PP+ L CRGGILAD MG+GKTV LL+L+ SDK+
Sbjct:  480 PRGFREGIDLRPYQKQSLYWMTQREKKSPSGRKELVRLLQRLA-----------------RESSTTHRVGIQHDDEVCLLGPRKGISCDCG--------PV--------VVDTNQVEAPCIARGFLHESDKDGNEESEDQELDHPLWERRFLCNNHQTKAFSFFVQPSFRNAAPEPPPSPLPCRGGILADSMGLGKTVQLLALVQSDKD 655          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14094.2992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KHD4_9PHAE4.360e-21268.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJC4_ECTSI2.470e-17264.36DNA repair helicase rad5,16, putative n=1 Tax=Ecto... [more]
A0A836CF42_9STRA2.050e-1328.48SNF2 family N-terminal domain-containing protein n... [more]
A0A7R9UCR3_9STRA5.050e-1328.90Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
UPI00098E5E096.050e-656.41transcription termination factor 2-like n=1 Tax=As... [more]
A0A392Q214_9FABA2.130e-553.19SWI/SNF-related matrix-associated actin-dependent ... [more]
A0A7S4MFN1_9STRA2.220e-534.72Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A2K3MG20_TRIPR2.920e-553.85Putative DNA repair helicase rad516 (Fragment) n=1... [more]
A0A1V9ZG98_9STRA2.920e-552.00RanBP-type and C3HC4-type zinc finger-containing p... [more]
A0A448Z872_9STRA3.140e-528.23Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14094contigE-fasciculatus_F_contig14094:285..3193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score525.4
Seed ortholog evalue3.7e-146
Seed eggNOG ortholog2880.D7FJC4
KEGG koko:K15173,ko:K15711
KEGG Pathwayko04918,map04918
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG1001@2759
EC2.3.2.27
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko03400,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSNF2-related helicase domain protein
Ec32 orthologEc-14_005810.1
Exons4
Model size1935
Cds size1935
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14094.2992.1prot_E-fasciculatus_F_contig14094.2992.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14094 285..3193 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927899.461283-CDS-E-fasciculatus_F_contig14094:284..4381622927899.461283-CDS-E-fasciculatus_F_contig14094:284..438Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14094 285..438 +
1695995744.0270076-CDS-E-fasciculatus_F_contig14094:284..4381695995744.0270076-CDS-E-fasciculatus_F_contig14094:284..438Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14094 285..438 +
1622927899.4736211-CDS-E-fasciculatus_F_contig14094:712..7631622927899.4736211-CDS-E-fasciculatus_F_contig14094:712..763Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14094 713..763 +
1695995744.0376756-CDS-E-fasciculatus_F_contig14094:712..7631695995744.0376756-CDS-E-fasciculatus_F_contig14094:712..763Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14094 713..763 +
1622927899.4849238-CDS-E-fasciculatus_F_contig14094:958..17401622927899.4849238-CDS-E-fasciculatus_F_contig14094:958..1740Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14094 959..1740 +
1695995744.04959-CDS-E-fasciculatus_F_contig14094:958..17401695995744.04959-CDS-E-fasciculatus_F_contig14094:958..1740Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14094 959..1740 +
1622927899.4951117-CDS-E-fasciculatus_F_contig14094:2245..31931622927899.4951117-CDS-E-fasciculatus_F_contig14094:2245..3193Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14094 2246..3193 +
1695995744.0616803-CDS-E-fasciculatus_F_contig14094:2245..31931695995744.0616803-CDS-E-fasciculatus_F_contig14094:2245..3193Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14094 2246..3193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14094.2992.1

>prot_E-fasciculatus_F_contig14094.2992.1 ID=prot_E-fasciculatus_F_contig14094.2992.1|Name=mRNA_E-fasciculatus_F_contig14094.2992.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=645bp
QVCTFLAPLLQEGLVKAHAEAVCDLPGLGKFAEVPLMLSIEIEEGLFALD
PEEELYRNAYCLLQFAHTGHIDQEQPKSQQAAPAEKGKADHQQAQKPLTM
QERNGEGQQEEEEEDVREEDVKELYDDETQLCEMPEARDPRLFVDGLALR
RYQRQALAWMIQREKKRYVTEEDCTGLSSAVAVGAGEGAAEESGGGGGGG
VTIRDGRVRVASWGGASSANTKQGGSGDCGGGAGVAMHPLWERRAAASVV
VRKEASGDCLGLFGGNGAEGDDDDDDVGGGGDKGAPQLVLSQPEAFFVNV
YSRRFQRKFPPASLGCRGGILADEMGMGKTVMLLSLILSDKERRQEGGST
SNGVGDSGEEENDEEVQEEAGGPPAVSRDNNLVVCLDDDDDDDDSATSAA
ERDSKGKQKLGSGGPGGRNAAASSPEDALATADLPRRRKRRSPAVTEAVP
SSAGSVAVGTKRRRAAAAAAVAAVRLDVSSSDGGSSGGESDFMPTPESSD
GGGGSGSGSGSGSGSDGDDSDFEPIADNGKSRAVAANGGPPKRRRGETGK
RVGGANGKGRSGGGRWGGGKAGSDPSALLLDPYAVGAQGSNGAERVASGR
GAGKGGGTLVVCPLSLIGQWRGELESKTRKGAITVGFHYGAGRSR
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mRNA from alignment at E-fasciculatus_F_contig14094:285..3193+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14094.2992.1 ID=mRNA_E-fasciculatus_F_contig14094.2992.1|Name=mRNA_E-fasciculatus_F_contig14094.2992.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2909bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14094:285..3193+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTGTGCACGTTCCTGGCCCCGTTGCTGCAAGAGGGTTTGGTAAAGGC CCATGCGGAGGCGGTGTGCGATCTCCCGGGCCTGGGAAAGTTCGCGGAGG TGCCGCTCATGCTGTCCATCGAGATCGAGGAGGGGCTGTTCGCCTTGGAC CCTGGTACGATCTGATGCAAGTGACGCCAGTACAGGGTGGGGGACAACGT GGCTTCGAAGTGTTCTTTCCAGTTTTTTTTTGTGTGTGTTTGCCATCCCC TGCTCCTGCGTCGCTGTGTTGCTACCATGTGTGCCTCTACGAACAATAGA GCTTCGTTCGTTGTTTCCTTTGTCTCGCAAGCTAAGGAGCCGTCTTGCTT TGACCACTGTTCCCCCCCCCTCGACTTACATGGACCATTGTACCTTTGTT CGACTCTGCGCGCAATTGTATTTTGCAGAGGAGGAGCTTTACCGCAACGC GTACTGCCTCCTGCAGTTCGCCCACACAGGTGCGTGTAACGGGTTCGATA CTTTTGTCTCTGTTGGTTGTTTGTGCAAGGGCAGGGACATCATATGTGAA TGCGTTTGGCACTGCTGTACGGCACACCATCATCCTCCCCCTCACGGGAT ATATGGGAGAAAATATCGATGTTGATCCCCCCTCCACTCCTCCTTCCCTT CTTGGACCTAACGACGACCCGAAGGTCACATCGACCAAGAGCAACCAAAG AGTCAGCAGGCTGCTCCTGCGGAGAAAGGCAAGGCCGACCACCAGCAGGC CCAGAAGCCGTTAACAATGCAGGAGCGGAACGGGGAAGGGCAGCAGGAGG AAGAGGAGGAGGACGTCCGAGAGGAGGACGTGAAGGAGCTCTACGACGAC GAGACCCAGCTGTGCGAGATGCCGGAGGCCCGGGACCCCAGGCTCTTCGT CGACGGGCTAGCCCTCCGCCGGTACCAGCGGCAGGCGCTGGCGTGGATGA TCCAGCGCGAGAAGAAGCGGTACGTGACCGAGGAGGACTGCACGGGACTG TCATCGGCGGTCGCCGTCGGTGCTGGGGAAGGCGCGGCGGAGGAGAGCGG CGGCGGCGGCGGCGGCGGCGTCACGATCAGGGACGGGCGCGTTCGCGTGG CGTCTTGGGGGGGGGCTTCATCGGCCAACACGAAGCAAGGGGGCTCCGGC GACTGCGGCGGGGGGGCCGGGGTAGCGATGCATCCGCTGTGGGAAAGGCG AGCGGCGGCTTCGGTGGTGGTCCGGAAGGAGGCGTCTGGAGACTGTCTCG GCCTTTTCGGAGGCAATGGTGCGGAGGGTGATGATGATGATGATGATGTC GGGGGTGGCGGGGACAAGGGGGCCCCGCAGCTGGTGCTGTCGCAACCCGA GGCCTTCTTCGTGAACGTCTACTCCAGGCGGTTCCAGAGGAAGTTCCCGC CCGCGTCGCTGGGATGTCGCGGCGGCATTCTCGCCGACGAGATGGGGATG GGCAAGGTGAGGGAGGGGCGCGTGACGTGAAGGGTTGATGGGGGCGAGGA ACTCTCGTCTTGGTCGGCCCGCGGTTTCGTTCGGCGGAAGCTGAGTCGCT TCGTCCGGCGGGAGACGATGTGTTGTTCTCGATGTTTGATTTCGGAAGGG TTGTATGTCCCGCTCTGTCTGGGCTCTGTGTGTGCGTGTCTTCTTCGAGT GTTATTTTCCCTCTTAGTGTAGGGTGCTCTTCGCACGATAGCACGATGGT GTTTTGGCAGGTAGCCGCTCACGCTGTCTGGCGTTCATGATTCGGTCGGG GTCTCTGCATCCTATCCCCCCCCCCTAAAGTGATGTTTGCTGTGGGCATG GATCGAGCCGAGAGGGCGTTGTGTAGTGATTCCTCTCGTGTTTGGTCCTT CTTTTACTGCGGCTTGCAGCTTGTTTCACGGCCTGTTCACTAACGGCGTG CTTCCTCTGTGTTTTTGTGCTGCTGCTGCTGCTGCTGCTGGGATATATTC CGGCCATCCAGACCGTCATGCTGCTCTCGCTCATCCTGTCGGACAAAGAG AGGCGACAGGAAGGCGGTAGTACTAGCAACGGGGTTGGAGACAGCGGCGA AGAGGAGAACGACGAGGAGGTTCAAGAGGAAGCCGGGGGACCCCCCGCAG TAAGCCGCGACAACAACCTCGTGGTCTGCTTGGACGACGACGACGACGAC GACGACTCGGCTACGAGCGCGGCAGAGCGCGACTCTAAGGGCAAGCAAAA ACTCGGGAGCGGTGGTCCCGGCGGCCGTAACGCCGCCGCGTCGTCCCCGG AAGACGCACTCGCCACCGCCGACCTGCCCCGGCGTCGGAAGAGGCGTTCT CCCGCAGTCACAGAGGCGGTACCGTCTTCGGCGGGGTCCGTTGCCGTTGG GACGAAACGGCGGCGTGCCGCCGCCGCCGCCGCCGTCGCCGCCGTACGCC TCGATGTCAGCAGCAGTGACGGCGGCAGCAGCGGCGGTGAGAGCGACTTC ATGCCTACCCCGGAGAGCAGCGACGGCGGCGGCGGCAGCGGCAGCGGCAG CGGCAGCGGCAGCGGCAGCGACGGGGATGACTCTGACTTCGAGCCCATCG CCGACAACGGAAAGTCTCGCGCCGTCGCCGCGAACGGCGGCCCGCCAAAG CGTCGCCGAGGAGAAACCGGCAAACGTGTCGGCGGGGCCAACGGTAAGGG GCGCTCGGGCGGGGGGCGTTGGGGCGGGGGCAAGGCCGGGTCCGACCCCT CCGCCCTCCTCCTCGATCCCTACGCTGTCGGGGCGCAGGGGAGCAACGGC GCTGAGCGAGTGGCGAGCGGTCGCGGTGCGGGGAAGGGAGGGGGGACGCT GGTCGTGTGTCCCCTGTCGTTGATCGGGCAGTGGAGGGGGGAGCTGGAGA GCAAGACGCGGAAGGGGGCCATCACCGTCGGGTTCCACTACGGAGCGGGT AGAAGCAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14094:285..3193+

>mRNA_E-fasciculatus_F_contig14094.2992.1 ID=mRNA_E-fasciculatus_F_contig14094.2992.1|Name=mRNA_E-fasciculatus_F_contig14094.2992.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3870bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14094:285..3193+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTGTGCACGTTCCTGGCCCCGTTGCTGCAAGAGGGTTTGGTAAAGGC
CCATGCGGAGGCGGTGTGCGATCTCCCGGGCCTGGGAAAGTTCGCGGAGG
TGCCGCTCATGCTGTCCATCGAGATCGAGGAGGGGCTGTTCGCCTTGGAC
CCTGCAGGTGTGCACGTTCCTGGCCCCGTTGCTGCAAGAGGGTTTGGTAA
AGGCCCATGCGGAGGCGGTGTGCGATCTCCCGGGCCTGGGAAAGTTCGCG
GAGGTGCCGCTCATGCTGTCCATCGAGATCGAGGAGGGGCTGTTCGCCTT
GGACCCTGAGGAGGAGCTTTACCGCAACGCGTACTGCCTCCTGCAGTTCG
CCCACACAGAGGAGGAGCTTTACCGCAACGCGTACTGCCTCCTGCAGTTC
GCCCACACAGGTCACATCGACCAAGAGCAACCAAAGAGTCAGCAGGCTGC
TCCTGCGGAGAAAGGCAAGGCCGACCACCAGCAGGCCCAGAAGCCGTTAA
CAATGCAGGAGCGGAACGGGGAAGGGCAGCAGGAGGAAGAGGAGGAGGAC
GTCCGAGAGGAGGACGTGAAGGAGCTCTACGACGACGAGACCCAGCTGTG
CGAGATGCCGGAGGCCCGGGACCCCAGGCTCTTCGTCGACGGGCTAGCCC
TCCGCCGGTACCAGCGGCAGGCGCTGGCGTGGATGATCCAGCGCGAGAAG
AAGCGGTACGTGACCGAGGAGGACTGCACGGGACTGTCATCGGCGGTCGC
CGTCGGTGCTGGGGAAGGCGCGGCGGAGGAGAGCGGCGGCGGCGGCGGCG
GCGGCGTCACGATCAGGGACGGGCGCGTTCGCGTGGCGTCTTGGGGGGGG
GCTTCATCGGCCAACACGAAGCAAGGGGGCTCCGGCGACTGCGGCGGGGG
GGCCGGGGTAGCGATGCATCCGCTGTGGGAAAGGCGAGCGGCGGCTTCGG
TGGTGGTCCGGAAGGAGGCGTCTGGAGACTGTCTCGGCCTTTTCGGAGGC
AATGGTGCGGAGGGTGATGATGATGATGATGATGTCGGGGGTGGCGGGGA
CAAGGGGGCCCCGCAGCTGGTGCTGTCGCAACCCGAGGCCTTCTTCGTGA
ACGTCTACTCCAGGCGGTTCCAGAGGAAGTTCCCGCCCGCGTCGCTGGGA
TGTCGCGGCGGCATTCTCGCCGACGAGATGGGGATGGGCAAGGTCACATC
GACCAAGAGCAACCAAAGAGTCAGCAGGCTGCTCCTGCGGAGAAAGGCAA
GGCCGACCACCAGCAGGCCCAGAAGCCGTTAACAATGCAGGAGCGGAACG
GGGAAGGGCAGCAGGAGGAAGAGGAGGAGGACGTCCGAGAGGAGGACGTG
AAGGAGCTCTACGACGACGAGACCCAGCTGTGCGAGATGCCGGAGGCCCG
GGACCCCAGGCTCTTCGTCGACGGGCTAGCCCTCCGCCGGTACCAGCGGC
AGGCGCTGGCGTGGATGATCCAGCGCGAGAAGAAGCGGTACGTGACCGAG
GAGGACTGCACGGGACTGTCATCGGCGGTCGCCGTCGGTGCTGGGGAAGG
CGCGGCGGAGGAGAGCGGCGGCGGCGGCGGCGGCGGCGTCACGATCAGGG
ACGGGCGCGTTCGCGTGGCGTCTTGGGGGGGGGCTTCATCGGCCAACACG
AAGCAAGGGGGCTCCGGCGACTGCGGCGGGGGGGCCGGGGTAGCGATGCA
TCCGCTGTGGGAAAGGCGAGCGGCGGCTTCGGTGGTGGTCCGGAAGGAGG
CGTCTGGAGACTGTCTCGGCCTTTTCGGAGGCAATGGTGCGGAGGGTGAT
GATGATGATGATGATGTCGGGGGTGGCGGGGACAAGGGGGCCCCGCAGCT
GGTGCTGTCGCAACCCGAGGCCTTCTTCGTGAACGTCTACTCCAGGCGGT
TCCAGAGGAAGTTCCCGCCCGCGTCGCTGGGATGTCGCGGCGGCATTCTC
GCCGACGAGATGGGGATGGGCAAGACCGTCATGCTGCTCTCGCTCATCCT
GTCGGACAAAGAGAGGCGACAGGAAGGCGGTAGTACTAGCAACGGGGTTG
GAGACAGCGGCGAAGAGGAGAACGACGAGGAGGTTCAAGAGGAAGCCGGG
GGACCCCCCGCAGTAAGCCGCGACAACAACCTCGTGGTCTGCTTGGACGA
CGACGACGACGACGACGACTCGGCTACGAGCGCGGCAGAGCGCGACTCTA
AGGGCAAGCAAAAACTCGGGAGCGGTGGTCCCGGCGGCCGTAACGCCGCC
GCGTCGTCCCCGGAAGACGCACTCGCCACCGCCGACCTGCCCCGGCGTCG
GAAGAGGCGTTCTCCCGCAGTCACAGAGGCGGTACCGTCTTCGGCGGGGT
CCGTTGCCGTTGGGACGAAACGGCGGCGTGCCGCCGCCGCCGCCGCCGTC
GCCGCCGTACGCCTCGATGTCAGCAGCAGTGACGGCGGCAGCAGCGGCGG
TGAGAGCGACTTCATGCCTACCCCGGAGAGCAGCGACGGCGGCGGCGGCA
GCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGACGGGGATGACTCTGAC
TTCGAGCCCATCGCCGACAACGGAAAGTCTCGCGCCGTCGCCGCGAACGG
CGGCCCGCCAAAGCGTCGCCGAGGAGAAACCGGCAAACGTGTCGGCGGGG
CCAACGGTAAGGGGCGCTCGGGCGGGGGGCGTTGGGGCGGGGGCAAGGCC
GGGTCCGACCCCTCCGCCCTCCTCCTCGATCCCTACGCTGTCGGGGCGCA
GGGGAGCAACGGCGCTGAGCGAGTGGCGAGCGGTCGCGGTGCGGGGAAGG
GAGGGGGGACGCTGGTCGTGTGTCCCCTGTCGTTGATCGGGCAGTGGAGG
GGGGAGCTGGAGAGCAAGACGCGGAAGGGGGCCATCACCGTCGGGTTCCA
CTACGGAGCGGGTAGAAGCAGGACCGTCATGCTGCTCTCGCTCATCCTGT
CGGACAAAGAGAGGCGACAGGAAGGCGGTAGTACTAGCAACGGGGTTGGA
GACAGCGGCGAAGAGGAGAACGACGAGGAGGTTCAAGAGGAAGCCGGGGG
ACCCCCCGCAGTAAGCCGCGACAACAACCTCGTGGTCTGCTTGGACGACG
ACGACGACGACGACGACTCGGCTACGAGCGCGGCAGAGCGCGACTCTAAG
GGCAAGCAAAAACTCGGGAGCGGTGGTCCCGGCGGCCGTAACGCCGCCGC
GTCGTCCCCGGAAGACGCACTCGCCACCGCCGACCTGCCCCGGCGTCGGA
AGAGGCGTTCTCCCGCAGTCACAGAGGCGGTACCGTCTTCGGCGGGGTCC
GTTGCCGTTGGGACGAAACGGCGGCGTGCCGCCGCCGCCGCCGCCGTCGC
CGCCGTACGCCTCGATGTCAGCAGCAGTGACGGCGGCAGCAGCGGCGGTG
AGAGCGACTTCATGCCTACCCCGGAGAGCAGCGACGGCGGCGGCGGCAGC
GGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGACGGGGATGACTCTGACTT
CGAGCCCATCGCCGACAACGGAAAGTCTCGCGCCGTCGCCGCGAACGGCG
GCCCGCCAAAGCGTCGCCGAGGAGAAACCGGCAAACGTGTCGGCGGGGCC
AACGGTAAGGGGCGCTCGGGCGGGGGGCGTTGGGGCGGGGGCAAGGCCGG
GTCCGACCCCTCCGCCCTCCTCCTCGATCCCTACGCTGTCGGGGCGCAGG
GGAGCAACGGCGCTGAGCGAGTGGCGAGCGGTCGCGGTGCGGGGAAGGGA
GGGGGGACGCTGGTCGTGTGTCCCCTGTCGTTGATCGGGCAGTGGAGGGG
GGAGCTGGAGAGCAAGACGCGGAAGGGGGCCATCACCGTCGGGTTCCACT
ACGGAGCGGGTAGAAGCAGG
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