mRNA_E-fasciculatus_F_contig14092.2991.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14092.2991.1
Unique NamemRNA_E-fasciculatus_F_contig14092.2991.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14092.2991.1 vs. uniprot
Match: A0A6H5JYC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC0_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 1.460e-46
Identity = 137/161 (85.09%), Postives = 145/161 (90.06%), Query Frame = 2 
Query:  314 FHGF*RDGTLTKTNPENCCAPKKVLFKMYGDASRGGLVGREGLKALILDVIAASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDFEKELGGILAKMAEVVLTEYDSDNDGLLTEKEWRAYLKQEEDSVIAFLDTLSDSVGNLLLPP 796
            F  F     L K +P       ++LF+MYGDASRGGLVGREGLKALILDVIAASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDFEKELGGILAKMA+VVLTE+D+DNDGLLTEKEW+AYLKQEEDSVIAFLDTLSDSVGNLLLPP
Sbjct:  113 FEEFASAACLLKGSPHQ--TKLELLFRMYGDASRGGLVGREGLKALILDVIAASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDFEKELGGILAKMADVVLTEHDADNDGLLTEKEWKAYLKQEEDSVIAFLDTLSDSVGNLLLPP 271
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BLAST of mRNA_E-fasciculatus_F_contig14092.2991.1 vs. uniprot
Match: D7FPF0_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF0_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 2.060e-23
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 2 
Query:  644 MAEVVLTEYDSDNDGLLTEKEWRAYLKQEEDSVIAFLDTLSDSVGNLLLPP 796
            MA+VVLTEYD+DNDGLLTEKEWRAYLKQEEDSVIAFLDTLSDSVGNLLLPP
Sbjct:    1 MADVVLTEYDADNDGLLTEKEWRAYLKQEEDSVIAFLDTLSDSVGNLLLPP 51
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14092.2991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JYC0_9PHAE1.460e-4685.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPF0_ECTSI2.060e-2396.08EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14092contigE-fasciculatus_F_contig14092:793..2758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_004670.1
Exons3
Model size879
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14092.2991.1prot_E-fasciculatus_F_contig14092.2991.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14092 873..2364 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927899.335736-UTR-E-fasciculatus_F_contig14092:792..8721622927899.335736-UTR-E-fasciculatus_F_contig14092:792..872Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14092 793..872 -
1695995743.9705565-UTR-E-fasciculatus_F_contig14092:792..8721695995743.9705565-UTR-E-fasciculatus_F_contig14092:792..872Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14092 793..872 -
1622927899.3991916-UTR-E-fasciculatus_F_contig14092:2364..27581622927899.3991916-UTR-E-fasciculatus_F_contig14092:2364..2758Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14092 2365..2758 -
1695995744.016123-UTR-E-fasciculatus_F_contig14092:2364..27581695995744.016123-UTR-E-fasciculatus_F_contig14092:2364..2758Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14092 2365..2758 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927899.3551843-CDS-E-fasciculatus_F_contig14092:872..9471622927899.3551843-CDS-E-fasciculatus_F_contig14092:872..947Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14092 873..947 -
1695995743.979616-CDS-E-fasciculatus_F_contig14092:872..9471695995743.979616-CDS-E-fasciculatus_F_contig14092:872..947Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14092 873..947 -
1622927899.3709664-CDS-E-fasciculatus_F_contig14092:1241..12981622927899.3709664-CDS-E-fasciculatus_F_contig14092:1241..1298Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14092 1242..1298 -
1695995743.9907002-CDS-E-fasciculatus_F_contig14092:1241..12981695995743.9907002-CDS-E-fasciculatus_F_contig14092:1241..1298Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14092 1242..1298 -
1622927899.3858328-CDS-E-fasciculatus_F_contig14092:2091..23641622927899.3858328-CDS-E-fasciculatus_F_contig14092:2091..2364Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14092 2092..2364 -
1695995744.0030918-CDS-E-fasciculatus_F_contig14092:2091..23641695995744.0030918-CDS-E-fasciculatus_F_contig14092:2091..2364Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14092 2092..2364 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14092.2991.1

>prot_E-fasciculatus_F_contig14092.2991.1 ID=prot_E-fasciculatus_F_contig14092.2991.1|Name=mRNA_E-fasciculatus_F_contig14092.2991.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=135bp
MYGDASRGGLVGREGLKALILDVIAASPPLLTPPSLAVTGGGGGGGTSES
PRSSSAWALQPHQQQEQQQQPDFEKELGGILAKMAEVVLTEYDSDNDGLL
TEKEWRAYLKQEEDSVIAFLDTLSDSVGNLLLPP*
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mRNA from alignment at E-fasciculatus_F_contig14092:793..2758-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14092.2991.1 ID=mRNA_E-fasciculatus_F_contig14092.2991.1|Name=mRNA_E-fasciculatus_F_contig14092.2991.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1966bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14092:793..2758- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGTGAGGAGGCATGTTCTTGCTACGGCCACGGGCTGATCTGATTTCACTG
CATGCTGTTGTTTTCGTCGAAGCGGTCGAGTCGATTGGCTGTCTCAGTGT
TTAGAGCGAGTCCCTCGCACTTAGGAACCAAGGAAGCGCGCGATTTCAGC
TTGCGAGGGGTATCTATGGTCCAAGTTGAGACGAAATGTATGGGCAAGAA
TCCCCGTGCCACAAAGGGAAGAATGAGAATGTGCAACCGCTTCGTGTGAC
GAATCGCAGACCTCGCACCCCTCTCTCCCGTCCCACCGTTACCTCATCTC
GGCGTTATGGTTCTTCCATGGTTTTTGACGCGACGGGACGCTGACCAAAA
CGAATCCCGAAAACTGCTGTGCACCGAAAAAAGTTCTCTTCAAGATGTAC
GGAGACGCTAGCAGAGGCGGGCTCGTCGGGAGGGAAGGGCTGAAAGCCCT
GATCCTCGATGTGATCGCTGCGTCTCCGCCGTTACTCACGCCGCCGTCGC
TTGCTGTCACCGGTGGCGGCGGCGGCGGCGGCACCAGCGAGTCGCCGCGT
TCGTCGTCTGCTTGGGCTCTACAACCGCACCAGCAGCAAGAGCAGCAGCA
GCAACCGGACTTCGAGAAGGAGCTGGGGGGCATCCTGGCCAAGATGGCTG
AGGTCGTTCTCACCGAGGTGACAAGCACCTTTATCCCACACAGCGACTTT
TTTTCCTTCGGTTGGGTCGTTTGGTTTGTAGACCGGTCTGGTCTGGCGGC
CGGGTATCCAGGCCGTTGATTGGTCGGGCAATTGGTTTCAGCATTTGGCG
GCCTATTGAGGGCCTAAATGATGAGGCTGTGGTTGCAGCATCATAGTAGG
ATCCGTGTGTTCAAGGCAATTTGACGTAGCACTCCTTCAAAGCAGCTCAA
GGGAGCATGGGTGGAGTGGTTTGGATTTTCACATGGTTAGCATGATTGGA
TGGTGAAAAGAAACGTGTTGAAGTAGAGAAAAAGATATGGGAGGAGAGAA
AGAAACGCTACACCTGTCCGCACTTTGATCATTGGGACGATATGTTTTTT
GTTTGGATGCGTCAGAAATTAGGCATCTTCCTACTATGAGGGGACGCTCA
TCGACACTGGTGCTACTGTATTTGCGGTAGGGAAGCTCACACGTTGACAT
AAGGCCTTCCCTTGATTAGCACGAGGTCTCGAATGACAGAAAGAAATAGT
CGGCTTTCTGCCGAATCTTGACTACTTTGTGCAAGTTATTGTGACGTCAT
GCCTTCGAATAGAACCCTAAGAAATGTTTTCTCGGAGTGGCCTAAGATGC
AGCAGCCCGCAGCAGCGGACGGGCGGGCGAGTGACACATCTCAACCTCTA
CCAACTTGGACGTTGCGGAGCCCCCCCCCCCTAACACCTTCCTCTGACTC
TCTCGGCTTGTGTGATGTTGTATCCTGTGCCCGTGCTGTTTGTGGCTGGG
ATGTTGGCAGTACGACTCCGACAACGACGGCCTGCTGACAGAGAAGGAAT
GGAGGGCCTACCTCAAGGTGCGCTTGCTGCTTGCGATTACTTCACCCGAA
GTAGTCCGTGGGCTGGGCTTGGATTACCGGGTAGTAGACGGTTTCGGCGA
GATGGGGCGCTGGGCGTTCTGACATCCATGTAGCTAAATGTCGGCCGTGG
GCAAGTTCGAAAGGTGGTCGGTCATGTGCAAGCTCGAAAGGTGTTGCTCT
ACATATACATACGACACCACAACGCCCTATCCCACGCAATACATGAAACG
CCATCACCTACCCCGCCGCCCTGCGTACGTGTTCGTTTTTCGTTCGCTTG
CGCCCCCACAGCAAGAGGAGGACTCCGTGATCGCTTTCCTCGATACCCTC
AGCGATAGCGTCGGGAACTTGCTCCTGCCACCCTGACGACCCCATCTTGT
TCGTGGGGGCAAGTTCTCCTTGACAGTGCGATAGCTTAGAGAAAGGTGTC
GCGTGTAGACAAAAAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14092:793..2758-

>mRNA_E-fasciculatus_F_contig14092.2991.1 ID=mRNA_E-fasciculatus_F_contig14092.2991.1|Name=mRNA_E-fasciculatus_F_contig14092.2991.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=810bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14092:793..2758- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTACGGAGACGCTAGCAGAGGCGGGCTCGTCGGGAGGGAAGGGCTGAA
AGCCCTGATCCTCGATGTGATCGCTGCGTCTCCGCCGTTACTCACGCCGC
CGTCGCTTGCTGTCACCGGTGGCGGCGGCGGCGGCGGCACCAGCGAGTCG
CCGCGTTCGTCGTCTGCTTGGGCTCTACAACCGCACCAGCAGCAAGAGCA
GCAGCAGCAACCGGACTTCGAGAAGGAGCTGGGGGGCATCCTGGCCAAGA
TGGCTGAGGTCGTTCTCACCGAGATGTACGGAGACGCTAGCAGAGGCGGG
CTCGTCGGGAGGGAAGGGCTGAAAGCCCTGATCCTCGATGTGATCGCTGC
GTCTCCGCCGTTACTCACGCCGCCGTCGCTTGCTGTCACCGGTGGCGGCG
GCGGCGGCGGCACCAGCGAGTCGCCGCGTTCGTCGTCTGCTTGGGCTCTA
CAACCGCACCAGCAGCAAGAGCAGCAGCAGCAACCGGACTTCGAGAAGGA
GCTGGGGGGCATCCTGGCCAAGATGGCTGAGGTCGTTCTCACCGAGTACG
ACTCCGACAACGACGGCCTGCTGACAGAGAAGGAATGGAGGGCCTACCTC
AAGTACGACTCCGACAACGACGGCCTGCTGACAGAGAAGGAATGGAGGGC
CTACCTCAAGCAAGAGGAGGACTCCGTGATCGCTTTCCTCGATACCCTCA
GCGATAGCGTCGGGAACTTGCTCCTGCCACCCTGACAAGAGGAGGACTCC
GTGATCGCTTTCCTCGATACCCTCAGCGATAGCGTCGGGAACTTGCTCCT
GCCACCCTGA
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