mRNA_E-fasciculatus_F_contig14088.2987.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14088.2987.1
Unique NamemRNA_E-fasciculatus_F_contig14088.2987.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14088.2987.1 vs. uniprot
Match: A0A6H5LCQ5_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCQ5_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.050e-23
Identity = 75/120 (62.50%), Postives = 81/120 (67.50%), Query Frame = 1 
Query:  310 VAAVEGTVVKRRGEGGEHEAGXXAAAXXXXXXXSGLAVPGAKRLRPSLPGNSSFSDGDGGGQLPTTQHGG-GVSPRDGEAPAISTGLSSSPL--TGISRPTASGDVMTSSPFSPQPAATA 660
            VAAVEGT +KRRG+GGEH  G             GLA PGAKRLRPS P NSSFSDGDG  Q+PT QHGG   +PRDGEAPAIST LSSSP   T ISRPTAS   +   PFS Q + TA
Sbjct:  904 VAAVEGTAIKRRGDGGEHVGGGCG----------GLAAPGAKRLRPSHPENSSFSDGDGDEQVPTMQHGGLSPNPRDGEAPAISTALSSSPPPPTSISRPTASAPQLP--PFSGQASPTA 1011
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BLAST of mRNA_E-fasciculatus_F_contig14088.2987.1 vs. uniprot
Match: D7FZ71_ECTSI (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ71_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.350e-22
Identity = 91/180 (50.56%), Postives = 95/180 (52.78%), Query Frame = 1 
Query:   73 PPPRVASFPSVATLAAVXXXXGLDSAGGGIEGVGXXXXXXSFRGTAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXGSLVAAVEGTVVKRRGEGGEHEAGXXAAAXXXXXXXSGLAVPGAKRLRPSLPGNSSFSDGDGGGQLPTTQHGG-GVSPRDGEAPAISTGLSSSPL--TGISRPT 603
            PPPRVASFPSVATLAAV                                                              VAAVEGT +KRRG+ GEH        XXXXXXX  LA PGAKRLRPSLPGNSSFSDGDGG Q+PTTQHGG   +PRD EAPAIST LSSSP   T ISRPT
Sbjct:  431 PPPRVASFPSVATLAAV-------------------------------------------------------------AVAAVEGTAIKRRGDDGEH------VXXXXXXXXXXLAAPGAKRLRPSLPGNSSFSDGDGGEQVPTTQHGGVSPNPRDEEAPAISTALSSSPPPPTSISRPT 543
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14088.2987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LCQ5_9PHAE1.050e-2362.50AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. ... [more]
D7FZ71_ECTSI1.350e-2250.56AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14088contigE-fasciculatus_F_contig14088:1929..2903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAP2/ERF domain protein
Ec32 orthologEc-02_002320.1
Exons1
Model size976
Cds size975
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927898.589976-CDS-E-fasciculatus_F_contig14088:1928..29031622927898.589976-CDS-E-fasciculatus_F_contig14088:1928..2903Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14088 1929..2903 +
1695995743.6697428-CDS-E-fasciculatus_F_contig14088:1928..29031695995743.6697428-CDS-E-fasciculatus_F_contig14088:1928..2903Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14088 1929..2903 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14088.2987.1prot_E-fasciculatus_F_contig14088.2987.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14088 1929..2903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14088.2987.1

>prot_E-fasciculatus_F_contig14088.2987.1 ID=prot_E-fasciculatus_F_contig14088.2987.1|Name=mRNA_E-fasciculatus_F_contig14088.2987.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=325bp
AAAAFPSLGGQLAAVSAAASNGPRPPPRVASFPSVATLAAVAAAAGLDSA
GGGIEGVGGGGGGGSFRGTAEAAAMAAAVAAVEGTAVDGGGGHGAGAGVG
GSLVAAVEGTVVKRRGEGGEHEAGAGAAAGAGAGFGSGLAVPGAKRLRPS
LPGNSSFSDGDGGGQLPTTQHGGGVSPRDGEAPAISTGLSSSPLTGISRP
TASGDVMTSSPFSPQPAATAVDGGGGDLGSGRAAAAAVAATAALSKPTPS
AEGAAAGFGSVGETPAVVERSGGGGGGGDGGGAATTTVAAPSSDSAAPLP
PPSAAAAVTAVASMAQPKAAAIAE*
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mRNA from alignment at E-fasciculatus_F_contig14088:1929..2903+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14088.2987.1 ID=mRNA_E-fasciculatus_F_contig14088.2987.1|Name=mRNA_E-fasciculatus_F_contig14088.2987.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=975bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14088:1929..2903+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGCCGCCGCATTCCCGAGCTTGGGGGGCCAGCTTGCTGCTGTTTCTGC
TGCTGCCTCGAACGGTCCCCGTCCCCCGCCGCGCGTCGCTTCGTTCCCTT
CGGTGGCCACTCTGGCCGCGGTGGCGGCCGCCGCCGGCTTGGACTCCGCC
GGCGGGGGCATCGAAGGTGTTGGCGGCGGCGGCGGCGGTGGCTCGTTCAG
AGGGACTGCGGAGGCGGCGGCGATGGCGGCGGCGGTGGCCGCGGTAGAAG
GCACGGCCGTGGACGGTGGGGGGGGGCACGGGGCCGGAGCCGGAGTAGGC
GGCAGTCTGGTGGCCGCGGTAGAGGGCACCGTGGTCAAGAGGAGAGGGGA
AGGTGGGGAGCACGAGGCCGGAGCCGGAGCCGCAGCCGGAGCCGGAGCCG
GATTCGGCAGCGGTCTGGCGGTGCCGGGGGCGAAGCGACTGCGGCCGTCT
CTCCCCGGGAACTCATCCTTCTCCGATGGCGACGGCGGCGGGCAGCTTCC
GACGACGCAGCACGGCGGTGGTGTATCCCCCCGTGACGGAGAGGCGCCGG
CGATCAGCACGGGGTTGTCGTCGTCGCCACTGACGGGTATCTCTCGTCCT
ACCGCCTCCGGGGACGTCATGACGAGTTCGCCTTTTTCGCCTCAACCGGC
GGCAACGGCGGTGGACGGAGGAGGGGGAGACCTGGGCTCCGGCCGAGCAG
CGGCGGCGGCGGTGGCGGCGACGGCGGCTCTCAGCAAACCCACACCTTCA
GCGGAAGGCGCGGCGGCAGGGTTTGGCTCGGTCGGGGAGACCCCTGCTGT
GGTCGAAAGAAGCGGCGGCGGCGGCGGCGGCGGCGATGGTGGTGGTGCTG
CGACGACGACGGTTGCTGCCCCGAGTTCCGATTCTGCGGCGCCCCTCCCC
CCGCCTTCGGCGGCGGCGGCGGTGACGGCAGTCGCATCGATGGCACAGCC
GAAAGCGGCGGCCATCGCCGAGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14088:1929..2903+

>mRNA_E-fasciculatus_F_contig14088.2987.1 ID=mRNA_E-fasciculatus_F_contig14088.2987.1|Name=mRNA_E-fasciculatus_F_contig14088.2987.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1950bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14088:1929..2903+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGCCGCCGCATTCCCGAGCTTGGGGGGCCAGCTTGCTGCTGTTTCTGC
TGCTGCCTCGAACGGTCCCCGTCCCCCGCCGCGCGTCGCTTCGTTCCCTT
CGGTGGCCACTCTGGCCGCGGTGGCGGCCGCCGCCGGCTTGGACTCCGCC
GGCGGGGGCATCGAAGGTGTTGGCGGCGGCGGCGGCGGTGGCTCGTTCAG
AGGGACTGCGGAGGCGGCGGCGATGGCGGCGGCGGTGGCCGCGGTAGAAG
GCACGGCCGTGGACGGTGGGGGGGGGCACGGGGCCGGAGCCGGAGTAGGC
GGCAGTCTGGTGGCCGCGGTAGAGGGCACCGTGGTCAAGAGGAGAGGGGA
AGGTGGGGAGCACGAGGCCGGAGCCGGAGCCGCAGCCGGAGCCGGAGCCG
GATTCGGCAGCGGTCTGGCGGTGCCGGGGGCGAAGCGACTGCGGCCGTCT
CTCCCCGGGAACTCATCCTTCTCCGATGGCGACGGCGGCGGGCAGCTTCC
GACGACGCAGCACGGCGGTGGTGTATCCCCCCGTGACGGAGAGGCGCCGG
CGATCAGCACGGGGTTGTCGTCGTCGCCACTGACGGGTATCTCTCGTCCT
ACCGCCTCCGGGGACGTCATGACGAGTTCGCCTTTTTCGCCTCAACCGGC
GGCAACGGCGGTGGACGGAGGAGGGGGAGACCTGGGCTCCGGCCGAGCAG
CGGCGGCGGCGGTGGCGGCGACGGCGGCTCTCAGCAAACCCACACCTTCA
GCGGAAGGCGCGGCGGCAGGGTTTGGCTCGGTCGGGGAGACCCCTGCTGT
GGTCGAAAGAAGCGGCGGCGGCGGCGGCGGCGGCGATGGTGGTGGTGCTG
CGACGACGACGGTTGCTGCCCCGAGTTCCGATTCTGCGGCGCCCCTCCCC
CCGCCTTCGGCGGCGGCGGCGGTGACGGCAGTCGCATCGATGGCACAGCC
GAAAGCGGCGGCCATCGCCGAGTGAGCCGCCGCCGCATTCCCGAGCTTGG
GGGGCCAGCTTGCTGCTGTTTCTGCTGCTGCCTCGAACGGTCCCCGTCCC
CCGCCGCGCGTCGCTTCGTTCCCTTCGGTGGCCACTCTGGCCGCGGTGGC
GGCCGCCGCCGGCTTGGACTCCGCCGGCGGGGGCATCGAAGGTGTTGGCG
GCGGCGGCGGCGGTGGCTCGTTCAGAGGGACTGCGGAGGCGGCGGCGATG
GCGGCGGCGGTGGCCGCGGTAGAAGGCACGGCCGTGGACGGTGGGGGGGG
GCACGGGGCCGGAGCCGGAGTAGGCGGCAGTCTGGTGGCCGCGGTAGAGG
GCACCGTGGTCAAGAGGAGAGGGGAAGGTGGGGAGCACGAGGCCGGAGCC
GGAGCCGCAGCCGGAGCCGGAGCCGGATTCGGCAGCGGTCTGGCGGTGCC
GGGGGCGAAGCGACTGCGGCCGTCTCTCCCCGGGAACTCATCCTTCTCCG
ATGGCGACGGCGGCGGGCAGCTTCCGACGACGCAGCACGGCGGTGGTGTA
TCCCCCCGTGACGGAGAGGCGCCGGCGATCAGCACGGGGTTGTCGTCGTC
GCCACTGACGGGTATCTCTCGTCCTACCGCCTCCGGGGACGTCATGACGA
GTTCGCCTTTTTCGCCTCAACCGGCGGCAACGGCGGTGGACGGAGGAGGG
GGAGACCTGGGCTCCGGCCGAGCAGCGGCGGCGGCGGTGGCGGCGACGGC
GGCTCTCAGCAAACCCACACCTTCAGCGGAAGGCGCGGCGGCAGGGTTTG
GCTCGGTCGGGGAGACCCCTGCTGTGGTCGAAAGAAGCGGCGGCGGCGGC
GGCGGCGGCGATGGTGGTGGTGCTGCGACGACGACGGTTGCTGCCCCGAG
TTCCGATTCTGCGGCGCCCCTCCCCCCGCCTTCGGCGGCGGCGGCGGTGA
CGGCAGTCGCATCGATGGCACAGCCGAAAGCGGCGGCCATCGCCGAGTGA
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