mRNA_E-fasciculatus_F_contig14088.2986.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14088.2986.1
Unique NamemRNA_E-fasciculatus_F_contig14088.2986.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14088.2986.1 vs. uniprot
Match: A0A6H5LCQ5_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCQ5_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.960e-23
Identity = 98/149 (65.77%), Postives = 99/149 (66.44%), Query Frame = 3 
Query:    3 FGAHNYGGRTGWAGGRGEXXXXXXXXXXFPGSLAAFAASQACSGGGHDAAISQQPGGLFHDGS----FMQSAGPG-GGSRGPEGRGQGVLLSQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWAVAQQHLVASGALPTPREWGGD 434
            FGAHNYG RTG       XXXXXXXX  FPGSLAAFAA QA SGG HDA ISQ PGG+FH GS    FMQ   PG GGSRGPE RGQG  LSQQ    XXXXXXXXXXX                GW V QQHLVASGALPTPREWG D
Sbjct:  693 FGAHNYGVRTGXXXXXXXXXXXXXXXQGFPGSLAAFAAGQAGSGG-HDA-ISQLPGGVFHAGSTSSSFMQ---PGLGGSRGPESRGQGGALSQQQLQGXXXXXXXXXXXGSAGLGQLDSVAAAA-GWVVEQQHLVASGALPTPREWGSD 835
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BLAST of mRNA_E-fasciculatus_F_contig14088.2986.1 vs. uniprot
Match: D7FZ71_ECTSI (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ71_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 5.510e-7
Identity = 50/73 (68.49%), Postives = 50/73 (68.49%), Query Frame = 3 
Query:  216 GGSRGPEGRGQGVLLSQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWAVAQQHLVASGALPTPREWGGD 434
            GGS  PE RGQG  LSQ      XXXXXXXXXXXXXXXX          GWAVAQQHLVASG LPTPREWG D
Sbjct:  313 GGSTEPESRGQGGALSQHQLQAGXXXXXXXXXXXXXXXXPSDSVAAAAAGWAVAQQHLVASGTLPTPREWGSD 385
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14088.2986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LCQ5_9PHAE1.960e-2365.77AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. ... [more]
D7FZ71_ECTSI5.510e-768.49AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14088contigE-fasciculatus_F_contig14088:1411..1902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size494
Cds size492
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927898.5245416-CDS-E-fasciculatus_F_contig14088:1410..19021622927898.5245416-CDS-E-fasciculatus_F_contig14088:1410..1902Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14088 1411..1902 +
1695995743.6597142-CDS-E-fasciculatus_F_contig14088:1410..19021695995743.6597142-CDS-E-fasciculatus_F_contig14088:1410..1902Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14088 1411..1902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14088.2986.1prot_E-fasciculatus_F_contig14088.2986.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14088 1411..1902 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14088.2986.1

>prot_E-fasciculatus_F_contig14088.2986.1 ID=prot_E-fasciculatus_F_contig14088.2986.1|Name=mRNA_E-fasciculatus_F_contig14088.2986.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=164bp
SSGLTTTAVGRGGRVAEERPVGGWEKDKAFRVAWRRLLPARPAAAVGTTP
PSLSSRVACSTTARSCSQRVPAAAAGGQKAEARGSCFRSNSRKGEGVMRS
RQQALALRDRDRPTRWRLPRPVGRWRSSTSWPAGRCRPPGSGVAMAAAAT
AALLLPPPPVFRR*
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mRNA from alignment at E-fasciculatus_F_contig14088:1411..1902+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14088.2986.1 ID=mRNA_E-fasciculatus_F_contig14088.2986.1|Name=mRNA_E-fasciculatus_F_contig14088.2986.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=492bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14088:1411..1902+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGTTCGGGGCTCACAACTACGGCGGTCGGACGGGGTGGGCGGGTGGCAGA
GGAGAGGCCGGTGGGGGGCTGGGAGAAGGACAAGGCTTTCCGGGTAGCCT
GGCGGCGTTTGCTGCCAGCCAGGCCTGCAGCGGCGGTGGGCACGACGCCG
CCATCTCTCAGCAGCCGGGTGGCCTGTTCCACGACGGCTCGTTCATGCAG
TCAGCGGGTCCCGGCGGCGGCAGCAGGGGGCCAGAAGGCAGAGGCCAGGG
GGTCCTGCTTTCGCAGCAACAGCCGCAAGGGGGAGGGGGTGATGCGCTCG
CGCCAGCAGGCGCTGGCTCTGCGGGACCGGGACCGTCCGACTCGGTGGCG
GCTGCCGCGGCCGGTTGGGCGGTGGCGCAGCAGCACCTCGTGGCCAGCGG
GGCGCTGCCGACCCCCCGGGAGTGGGGTGGCGATGGCGGCGGCGGCAACG
GCAGCGCTGCTGCTGCCGCCGCCCCCGGTCTTTCGGCGGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14088:1411..1902+

>mRNA_E-fasciculatus_F_contig14088.2986.1 ID=mRNA_E-fasciculatus_F_contig14088.2986.1|Name=mRNA_E-fasciculatus_F_contig14088.2986.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=984bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14088:1411..1902+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGTTCGGGGCTCACAACTACGGCGGTCGGACGGGGTGGGCGGGTGGCAGA
GGAGAGGCCGGTGGGGGGCTGGGAGAAGGACAAGGCTTTCCGGGTAGCCT
GGCGGCGTTTGCTGCCAGCCAGGCCTGCAGCGGCGGTGGGCACGACGCCG
CCATCTCTCAGCAGCCGGGTGGCCTGTTCCACGACGGCTCGTTCATGCAG
TCAGCGGGTCCCGGCGGCGGCAGCAGGGGGCCAGAAGGCAGAGGCCAGGG
GGTCCTGCTTTCGCAGCAACAGCCGCAAGGGGGAGGGGGTGATGCGCTCG
CGCCAGCAGGCGCTGGCTCTGCGGGACCGGGACCGTCCGACTCGGTGGCG
GCTGCCGCGGCCGGTTGGGCGGTGGCGCAGCAGCACCTCGTGGCCAGCGG
GGCGCTGCCGACCCCCCGGGAGTGGGGTGGCGATGGCGGCGGCGGCAACG
GCAGCGCTGCTGCTGCCGCCGCCCCCGGTCTTTCGGCGGTAGAGTTCGGG
GCTCACAACTACGGCGGTCGGACGGGGTGGGCGGGTGGCAGAGGAGAGGC
CGGTGGGGGGCTGGGAGAAGGACAAGGCTTTCCGGGTAGCCTGGCGGCGT
TTGCTGCCAGCCAGGCCTGCAGCGGCGGTGGGCACGACGCCGCCATCTCT
CAGCAGCCGGGTGGCCTGTTCCACGACGGCTCGTTCATGCAGTCAGCGGG
TCCCGGCGGCGGCAGCAGGGGGCCAGAAGGCAGAGGCCAGGGGGTCCTGC
TTTCGCAGCAACAGCCGCAAGGGGGAGGGGGTGATGCGCTCGCGCCAGCA
GGCGCTGGCTCTGCGGGACCGGGACCGTCCGACTCGGTGGCGGCTGCCGC
GGCCGGTTGGGCGGTGGCGCAGCAGCACCTCGTGGCCAGCGGGGCGCTGC
CGACCCCCCGGGAGTGGGGTGGCGATGGCGGCGGCGGCAACGGCAGCGCT
GCTGCTGCCGCCGCCCCCGGTCTTTCGGCGGTAG
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