mRNA_E-fasciculatus_F_contig14085.2984.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14085.2984.1
Unique NamemRNA_E-fasciculatus_F_contig14085.2984.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14085.2984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14085contigE-fasciculatus_F_contig14085:1453..2096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size645
Cds size558
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927898.4002576-UTR-E-fasciculatus_F_contig14085:1452..15381622927898.4002576-UTR-E-fasciculatus_F_contig14085:1452..1538Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14085 1453..1538 +
1695995743.6297708-UTR-E-fasciculatus_F_contig14085:1452..15381695995743.6297708-UTR-E-fasciculatus_F_contig14085:1452..1538Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14085 1453..1538 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927898.424008-CDS-E-fasciculatus_F_contig14085:1538..20961622927898.424008-CDS-E-fasciculatus_F_contig14085:1538..2096Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14085 1539..2096 +
1695995743.638734-CDS-E-fasciculatus_F_contig14085:1538..20961695995743.638734-CDS-E-fasciculatus_F_contig14085:1538..2096Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14085 1539..2096 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14085.2984.1prot_E-fasciculatus_F_contig14085.2984.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14085 1539..2096 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14085.2984.1

>prot_E-fasciculatus_F_contig14085.2984.1 ID=prot_E-fasciculatus_F_contig14085.2984.1|Name=mRNA_E-fasciculatus_F_contig14085.2984.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=186bp
MSAAPSTAGGSLTENVGRVLQQDNNSNSPVLDLGPPAAQQEQQQQEGSTS
EEAGTTASTDDVAPSPPRRVFRRESRYTPPGSPGGLDKEQSVKELYESAR
VSFDGKLQPKAGELVALEHPVRQGPSRMVMEQDWTVTAGAAAAAPAPAVA
PAEEEEEEEEEPWRPPSPQPSPPRVRGIVHKLPACL
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mRNA from alignment at E-fasciculatus_F_contig14085:1453..2096+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14085.2984.1 ID=mRNA_E-fasciculatus_F_contig14085.2984.1|Name=mRNA_E-fasciculatus_F_contig14085.2984.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=644bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14085:1453..2096+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAGAGCACTGCCTTAGGTAGCCTCCTGGGCACCATCTGAGACCCCGTTT
CCCTTCCCCAAGTGTCGAGCACACAAGTGTGTCTTGATGTCCGCGGCGCC
GTCCACCGCCGGCGGCAGCCTCACGGAGAACGTGGGGCGGGTGCTTCAAC
AAGACAACAACAGCAACAGCCCGGTGCTGGACTTGGGTCCTCCCGCAGCG
CAACAAGAGCAGCAGCAGCAAGAGGGTTCCACCTCAGAAGAAGCAGGAAC
AACGGCAAGCACGGACGACGTGGCTCCCTCCCCGCCCAGGCGAGTCTTTC
GGCGAGAGTCGAGGTACACTCCCCCCGGGTCGCCGGGGGGCCTGGACAAG
GAGCAGTCCGTCAAGGAGCTCTATGAGTCCGCGAGGGTCTCCTTCGATGG
AAAGCTGCAGCCGAAAGCGGGAGAGCTTGTCGCCCTCGAACACCCGGTTC
GGCAGGGCCCGAGCAGGATGGTGATGGAGCAGGACTGGACCGTGACGGCG
GGGGCAGCGGCGGCAGCACCCGCTCCCGCGGTTGCGCCTGCGGAGGAGGA
GGAGGAGGAGGAGGAGGAGCCTTGGAGGCCACCGTCGCCGCAGCCCTCGC
CACCGCGTGTGCGGGGCATCGTCCACAAGCTCCCAGCTTGCCTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14085:1453..2096+

>mRNA_E-fasciculatus_F_contig14085.2984.1 ID=mRNA_E-fasciculatus_F_contig14085.2984.1|Name=mRNA_E-fasciculatus_F_contig14085.2984.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1116bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14085:1453..2096+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCCGCGGCGCCGTCCACCGCCGGCGGCAGCCTCACGGAGAACGTGGG
GCGGGTGCTTCAACAAGACAACAACAGCAACAGCCCGGTGCTGGACTTGG
GTCCTCCCGCAGCGCAACAAGAGCAGCAGCAGCAAGAGGGTTCCACCTCA
GAAGAAGCAGGAACAACGGCAAGCACGGACGACGTGGCTCCCTCCCCGCC
CAGGCGAGTCTTTCGGCGAGAGTCGAGGTACACTCCCCCCGGGTCGCCGG
GGGGCCTGGACAAGGAGCAGTCCGTCAAGGAGCTCTATGAGTCCGCGAGG
GTCTCCTTCGATGGAAAGCTGCAGCCGAAAGCGGGAGAGCTTGTCGCCCT
CGAACACCCGGTTCGGCAGGGCCCGAGCAGGATGGTGATGGAGCAGGACT
GGACCGTGACGGCGGGGGCAGCGGCGGCAGCACCCGCTCCCGCGGTTGCG
CCTGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGCCTTGGAGGCCACCGTC
GCCGCAGCCCTCGCCACCGCGTGTGCGGGGCATCGTCCACAAGCTCCCAG
CTTGCCTGATGTCCGCGGCGCCGTCCACCGCCGGCGGCAGCCTCACGGAG
AACGTGGGGCGGGTGCTTCAACAAGACAACAACAGCAACAGCCCGGTGCT
GGACTTGGGTCCTCCCGCAGCGCAACAAGAGCAGCAGCAGCAAGAGGGTT
CCACCTCAGAAGAAGCAGGAACAACGGCAAGCACGGACGACGTGGCTCCC
TCCCCGCCCAGGCGAGTCTTTCGGCGAGAGTCGAGGTACACTCCCCCCGG
GTCGCCGGGGGGCCTGGACAAGGAGCAGTCCGTCAAGGAGCTCTATGAGT
CCGCGAGGGTCTCCTTCGATGGAAAGCTGCAGCCGAAAGCGGGAGAGCTT
GTCGCCCTCGAACACCCGGTTCGGCAGGGCCCGAGCAGGATGGTGATGGA
GCAGGACTGGACCGTGACGGCGGGGGCAGCGGCGGCAGCACCCGCTCCCG
CGGTTGCGCCTGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGCCTTGGAGG
CCACCGTCGCCGCAGCCCTCGCCACCGCGTGTGCGGGGCATCGTCCACAA
GCTCCCAGCTTGCCTG
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