mRNA_E-fasciculatus_F_contig1408.2981.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1408.2981.1 vs. uniprot
Match: D8LF63_ECTSI (eIF3_p135 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF63_ECTSI) HSP 1 Score: 640 bits (1652), Expect = 7.500e-201 Identity = 420/808 (51.98%), Postives = 477/808 (59.03%), Query Frame = 1
Query: 97 VPLEEHTLARKDILYQVLVHSTDEVISVSGDKLTDSYQSIFWRMLRPEFVKGDSEAMSFVGAQVEPAAAAPTDPAAEARQELDSLAPLAAPTLP----RWLSEKPDEANATSSGAT------SSLSILPTIXXXXXXXXXXXXXGGADPSTDDASVETFSMTDSDGSTPTLEPHSGHLQRLF--------------------------------ATAICNSQEELGTPVPGQKQSFLSACVIR----QGGPHNGRCAMRSHSRHHRFFCVRPTGWRGPAMPDRFRALPRGGENATD-AAEGKSTNLPNALLDV----VSFFAD--------RGKPTQ*LRGRGQTVVWSLKLRACR-LSLSGIHLDNLRRFFFSFRQGLVPPSSRFPVVHVPFPHRYLVLRLLPLLSW------LCVTVGGGAGRGVVLEEMVRGRANVSYRFYPDXXXXXXDGDQQPAASGDSVDRYRFIPLSPDALSCFIRHSPDRSARNQEVHEATSIMIEVAVPHVVEYLTSLPQDVQKTLRLDVELHRHGVNVRHLGKVRFLLMEQNKPEDGLLKDMILTEMIARTLKNILRYFQRTWMKAERSTSEQGMRMLVVRFLNLVTGAHVNSATFWKEKVLTGVLQRFGLVSLTTSERRDAQQISRNPVILQACVSKLTEMQGVVLTEDARAHFYADSPVDFEFMVSDIHEINPIVRYMHILDYGGGVMLSMQAQRLMAEGRGNPRAERQVERLNGMAKEFFITAYRSLPDDKNTRKAILSYSKSRGFALFPSNAPGDQPTHSSSSVGG--DGESVYDSRAAQMTST 2316
VPL+ H LARK+I YQVL+ ST EVI V GDK++D YQS+FWRMLRPEFVKGDSE M+ VGA V AAA PT AAEARQELDS AP AA TLP +SE+P+E + ++L + D + D + D + P L P SGH ++ F A+ N+ G+P P + + R Q P G R+H G RG A D A +G N+ L F D RG PT LR G + WS R R + L G+ + +F R G P +P + + + + VGGGAGRGVVLE+M RGRANVSYRFYPD XXXX DGDQQ +H+ATS+M+EVAVP+VVE LTSLPQDVQKTL LDVELHRHGVNVRHLGKVRFLLMEQNKPE+GLLKDM+LTEMIARTLKNILR FQRTWMKAE+STSEQGMRMLVVRFLNLVTGAH+NSATFWKEKVLTGVLQRFGLVSLTTSERRD Q+ISR+P +LQ CV KLTEMQGVVLTED +AHFYADSPV FEF VSDI EINPIVRYMHILDYGGGVMLSMQAQRLMAEG+GN R VERL+GMA +FFITAYRSLPDD NTR AILSYSKS GF+LF S+APGDQP H SS GG GES DS AAQ + T
Sbjct: 2 VPLDRHNLARKNIKYQVLLDSTREVIEVFGDKISDRYQSVFWRMLRPEFVKGDSETMAVVGAHVG-AAAVPTAAAAEARQELDSPAPAAARTLPIGFPSRISERPEEESGXXXXXXXXXXXXAALPMTAAFRPLASRGPQDGQGPAPDAAADTGGRAFGPVEHGDEAPPPLNPLSGHYEQGFLDDSERGVDVSGNGDEHAAPTGWNAPSIPGSGGEAVDNASPPSGSPAPTAAAAASPSVTFRRKVPQTPPVRGTPGRRTHG---------GGGRRGDAXXXXXXXXXXXXXXGRDPATDGYDANVETLTLTESGGSCEAFIDFDENNQYERGLPTGSLRA-GSSNNWSFSSRRSRRIGLVGVQSYHFSSSYFG-RAGSAPVRVWHEDREAVYPDNHGQGQTGQSILFGGGGTGSEGNVGGGAGRGVVLEDMTRGRANVSYRFYPDPXXXXDDGDQQ-------------------------------------IHDATSVMLEVAVPNVVEKLTSLPQDVQKTLHLDVELHRHGVNVRHLGKVRFLLMEQNKPENGLLKDMMLTEMIARTLKNILRCFQRTWMKAEKSTSEQGMRMLVVRFLNLVTGAHINSATFWKEKVLTGVLQRFGLVSLTTSERRDVQKISRDPYVLQDCVFKLTEMQGVVLTEDTKAHFYADSPVGFEFTVSDIREINPIVRYMHILDYGGGVMLSMQAQRLMAEGKGNTRT---VERLHGMANQFFITAYRSLPDDPNTRAAILSYSKSAGFSLF-SSAPGDQPAHFSSGAGGVDAGESESDSGAAQSSET 756
BLAST of mRNA_E-fasciculatus_F_contig1408.2981.1 vs. uniprot
Match: D7G5H0_ECTSI (eIF3_p135 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5H0_ECTSI) HSP 1 Score: 556 bits (1432), Expect = 5.100e-177 Identity = 306/398 (76.88%), Postives = 324/398 (81.41%), Query Frame = 1
Query: 1153 VGGGAGRGVVLEEMVRGRANVSYRFYPDXXXXXXDG-DQQPAA---SGDSVDRYRFIPLSPDALSCFIRHSPDRSARNQEVHEATSIMIEVAVPHVVEYLTSLPQDVQKTLRLDVELHRHGVNVRHLGKVRFLLMEQNKPEDGLLKDMILTEMIARTLKNILRYFQRTWMKAERSTSEQGMRMLVVRFLNLVTGAHVNSATFWKEKVLTGVLQRFGLVSLTTSERRDAQQISRNPVILQACVSKLTEMQGVVLTEDARAHFYADSPVDFEFMVSDIHEINPIVRYMHILDYGGGVMLSMQAQRLMAEGRGNPRAERQVERLNGMAKEFFITAYRSLPDDKNTRKAILSYSKSRGFALFPSNAPGDQPTHSSSSVGGDG------------ESVYDSRA 2298
VGGGAGRGVVLE+M RGRANVS RFYPD DG DQQPAA S S D YRFIPLSPDAL+ F + S DR+ RNQE+H+AT+ M+E AVP+VVE LTSLPQDVQKTL LDVELHRHGVNVRHLG+VR+LLMEQNKPE+ LLKDM+LTEMIARTLKNILR FQRTWMKAERSTSEQGMRMLVVRFLNLVTGAHVNSATFWK+ VLTGVLQRFGLVSLTTSERRD Q+ISRNP +LQ CV KLTEMQGV LTEDA+AHFYADSPV FEFMVSDIHEI PIVRYMHILDYGGGVMLSMQAQRL EG N R VERL GMA +FFITAYRSLPDD TR AILSY KS ALFPS APGDQ HSSS G ESVYD RA
Sbjct: 114 VGGGAGRGVVLEDMARGRANVSIRFYPDADAETNDGGDQQPAAVTTSDGSADGYRFIPLSPDALTFFTKGSTDRAERNQEIHDATAAMLEAAVPNVVEKLTSLPQDVQKTLHLDVELHRHGVNVRHLGRVRYLLMEQNKPENELLKDMMLTEMIARTLKNILRCFQRTWMKAERSTSEQGMRMLVVRFLNLVTGAHVNSATFWKKNVLTGVLQRFGLVSLTTSERRDVQKISRNPCVLQDCVFKLTEMQGVELTEDAKAHFYADSPVGFEFMVSDIHEIKPIVRYMHILDYGGGVMLSMQAQRLKEEGERNART---VERLQGMANKFFITAYRSLPDDIATRAAILSYHKS--VALFPS-APGDQSVHSSSGGGXXXXXXXXXXXXXXXESVYDLRA 505
BLAST of mRNA_E-fasciculatus_F_contig1408.2981.1 vs. uniprot
Match: A0A7S2RNV0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RNV0_9STRA) HSP 1 Score: 166 bits (420), Expect = 1.210e-40 Identity = 115/335 (34.33%), Postives = 175/335 (52.24%), Query Frame = 1
Query: 1279 SGD-SVDRYRFIPLSPDALSCFIRHSPDRSARNQ--EVHEATSIMIEVAVPHVVEYLTSLPQDVQKTLRLDVELHRHGVNVRHLGKVRFLLMEQNKPEDG-LLKDMILTEMIARTLKNILRYFQRTWMKAERSTSEQGMRMLVVRFLNLVTGAHVNSATFWKEKVLTGVLQRFGLVSLTTSERRDAQ----------QISRNPVI-LQACVSKLTEMQGVVLTEDARAHFYADSPV--DFEFMVSDIHEINPIVRYMHILDYGGGVMLSM----QAQRLMA---EGRGNPRAE------RQVERLNGMAKEFFITAYRSLPDDKNTRKAILSYSK 2193
SGD D R +PL PDA+S F + +A EV AT ++ VP + L S P + L +ELH HGVN+RH+G +R + N L+ +L E++AR+LKN+L+ QR WM+A RS+S GM +LV +FLNL++G+H +S FW E +L G++ RFG L ER A+ + R L+ V +L E+ G+V + ++ F +D +EF+ DI E+ P+V+YMHI+DY + L M + ++LM + G AE R V+RL MA A+ ++P D++T + +K
Sbjct: 48 SGDWEGDPDRPVPLLPDAMSLFAELAGRENAARATAEVEAATQTLVHDVVPRLAASLLSCPPAELEFLDFALELHSHGVNLRHMGLIRSYIPRHNHDRRAETLRSRLLVEIVARSLKNMLKDDQRKWMRANRSSSWHGMSLLVAQFLNLISGSHPSSRVFWGEALLEGMVNRFGECCLFPEERLPAEGQEGVMTWESEFRRGGSSRLKDLVFRLAELTGIVFSSQVKSDFDSDPDAVNGYEFLAQDIEELKPVVKYMHIIDYSSSINLIMGSLARREKLMQCEQDAPGTLDAEATSASMRTVKRLENMAHVRLHKAHHAMPRDEDTAQVFQYLTK 382
BLAST of mRNA_E-fasciculatus_F_contig1408.2981.1 vs. uniprot
Match: D7G5G9_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G9_ECTSI) HSP 1 Score: 150 bits (379), Expect = 3.970e-33 Identity = 90/149 (60.40%), Postives = 109/149 (73.15%), Query Frame = 1
Query: 1 QVEHLSDILSDRTPVYVHIYAPPKIGIILSAKVPLEEHTLARKDILYQVLVHSTDEVISVSGDKLTDSYQSIFWRMLRPEFVKGDSEAMSFVGAQVEPAAAAPTDPAAEARQELDSLAPLAAPTLP----RWLSEKPDEANATSSGATS 435
+VEHLSDILSD TPVYVHI PP+ GIILS VPL+ H LARK I+YQV + S++EVI V GDK++D +QS++WRMLRPEFVKGDSE M+ V VE AAA +A QELD AP AAPTLP +SE+P+E + SSGAT+
Sbjct: 465 KVEHLSDILSDMTPVYVHIGDPPEKGIILSVTVPLDMHNLARKYIMYQVQLDSSNEVIEVCGDKVSDRHQSVYWRMLRPEFVKGDSETMAVV---VE-AAAXXXXXXXQAPQELDP-APAAAPTLPIGFPSKISERPEEESGASSGATT 608
BLAST of mRNA_E-fasciculatus_F_contig1408.2981.1 vs. uniprot
Match: A0A6H5KU05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU05_9PHAE) HSP 1 Score: 129 bits (325), Expect = 2.790e-31 Identity = 64/91 (70.33%), Postives = 74/91 (81.32%), Query Frame = 1
Query: 4 VEHLSDILSDRTPVYVHIYAPPKIGIILSAKVPLEEHTLARKDILYQVLVHSTDEVISVSGDKLTDSYQSIFWRMLRPEFVKGDSEAMSFV 276
V+HLSDILSD TPV VHI PPK GIILSA VPLE H LARKDI YQV ++S DE+I V GD ++D +QS++WRMLRPEFVKGDSE M+ V
Sbjct: 5 VDHLSDILSDWTPVDVHIDDPPKKGIILSAMVPLERHNLARKDIKYQVQLYSPDEIIEVCGDNVSDRHQSVYWRMLRPEFVKGDSETMAVV 95
BLAST of mRNA_E-fasciculatus_F_contig1408.2981.1 vs. uniprot
Match: A0A7S1UGK4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGK4_9STRA) HSP 1 Score: 108 bits (270), Expect = 3.550e-23 Identity = 57/147 (38.78%), Postives = 90/147 (61.22%), Query Frame = 1
Query: 1315 LSPDALSCFIRHSPDRSARNQEVHEATSIMIEVAVPHVVEYLTSLPQDVQKTLRLDV--ELHRHGVNVRHLGKVRFLLMEQNKPEDGLLKDMILTEMIARTLKNILRYFQRTWMKAERSTSEQGMRMLVVRFLNLVTGAHVNSATFW 1749
L+PDAL+ F RH D N++V EAT + +P + L + + +++V E+H+ GVN+RHLG +R + + ++ ++L E++ RTLK +LR + R WM++ERS+SE G+ M+VV FLNL TG+H+N FW
Sbjct: 30 LNPDALTAFGRHDEDVFEHNRDVKEATLFLFRDVIPALATSLCAKYKTASAVRKMNVSLEMHKCGVNMRHLGLLRAHIPLDAEANHVQIRQILLREIVGRTLKQLLRDYMRRWMRSERSSSELGLIMVVVNFLNLTTGSHLNRNLFW 176
BLAST of mRNA_E-fasciculatus_F_contig1408.2981.1 vs. uniprot
Match: A0A6H5KFW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW7_9PHAE) HSP 1 Score: 107 bits (268), Expect = 4.820e-23 Identity = 69/114 (60.53%), Postives = 76/114 (66.67%), Query Frame = 1
Query: 1996 MHILDYGGGVMLSMQAQRLMAEGRGNPRAERQVERLNGMAKEFFITAYRSLPDDKNTRKAILSYSKSRGFALFPSNAPGDQPTHSSSSVGGDG------ESVYDSRAAQMTSTK 2319
MHILDYGGGVMLSMQA RL EG + R +VERL GMA F++AYRSLPDD +TR AILSY KS ALFPS APGDQ HS GGDG ESVY+ RA T+
Sbjct: 1 MHILDYGGGVMLSMQAARLKEEGEQHAR---KVERLEGMANNLFVSAYRSLPDDVDTRAAILSYHKS--VALFPS-APGDQSAHSPRG-GGDGXXXXXGESVYERRADPKNGTR 107
BLAST of mRNA_E-fasciculatus_F_contig1408.2981.1 vs. uniprot
Match: F4PL66_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PL66_CAVFA) HSP 1 Score: 117 bits (294), Expect = 1.620e-22 Identity = 92/308 (29.87%), Postives = 150/308 (48.70%), Query Frame = 1
Query: 1309 IPLSPDALSCFIRHSPDRSA-RNQEVHEATSIMIEVAVPHVVEYLTSLPQDVQKTLRLDVELHRHGVNVRHLGKVRFLLMEQNKPEDGLLKDMILTEMIARTLKNILRYFQRTWMKAERSTSEQGMRMLVVRFLNLVTGAHVNSAT-FWKEKVLTGVLQRFGLVSLTTSERRDAQQISRNPVILQACVSKLTEMQGVVLTEDARAHFYADSPVDFEFMVSDIHEINPIVRYMHILDYGGGVMLSMQAQRLMAEGRGNPRAERQVERLNGMAKEFFITAYRSLPDDKNTRKAILSYSKSRGFALFPSNA 2226
IPLS DA S F + P+ N EV EAT + V +P V ++ + + +L +HR G+NVR+LG +R + +D LK ++LTE++AR KNI+R R MK RS +V+ F N++ GA V W + +L RF + ++E +D+ ++ V + +L M G+ L +++ DS F ++SDI ++ V++M+I+ G LS+Q +M +GRG+ ERL +A F A RS PD+K+ + K + S++
Sbjct: 702 IPLSSDAYSPFGKVDPNAMQYNNSEVKEATEYLYNVCIPKVASWMDAHSNTINWLSQLTEIIHREGINVRYLGIIR------HHVQDPRLKQVLLTEIVARVFKNIIRAELREKMKEMRSIEADSYIQVVMDFFNIILGAPVQKHDRLWYHSIKNEILLRFD--NSLSNEEKDSNFDLKSQVDIYNIFVRLLSMTGIKLADESMKEMKNDSQ-SFRVVLSDIAAMDVKVKHMNIISLAEGNALSLQC--MMWDGRGS-------ERLFKLATNKFEEAIRSTPDNKDILNGYANVLKQLALTVGKSDS 991
BLAST of mRNA_E-fasciculatus_F_contig1408.2981.1 vs. uniprot
Match: D7G9G7_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G7_ECTSI) HSP 1 Score: 112 bits (281), Expect = 3.590e-22 Identity = 67/142 (47.18%), Postives = 86/142 (60.56%), Query Frame = 1
Query: 1594 EMIARTLKNILRYFQRTWMKAERSTSEQGMRMLVVRFLNLVTGAHVNSATFWKEKVLTGVLQRFGLVSLTTSERRDAQQI-SRNPVILQACVSKLTEMQGVVLTEDA----RAHFYADSPVDFEFMVSDIHEINPIVRYMHI 2004
E++ RTLK +LR FQR WMK+E+S+SE+GM +LV +FLNLVTG H S FW+E V TGV QRFG V+LT SER + S P IL V +L ++ GV E R+ V FEF + DI +I +V M I
Sbjct: 314 EVVVRTLKLVLREFQRRWMKSEQSSSERGMHLLVTQFLNLVTGHHERSHLFWRENVTTGVCQRFGTVALTESERAGLWTVCSDRPEILLTIVKELVKVTGVRFKESVNQKLRSRKAKSVVVGFEFHLGDIRDIEAVVTPMAI 455
BLAST of mRNA_E-fasciculatus_F_contig1408.2981.1 vs. uniprot
Match: A0A8J4V2N0_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V2N0_9MYCE) HSP 1 Score: 114 bits (285), Expect = 1.820e-21 Identity = 90/302 (29.80%), Postives = 146/302 (48.34%), Query Frame = 1
Query: 1309 IPLSPDALSCFIRHSPDRSARNQEVHEATSIMIEVAVPHVVEYLTSLPQDVQKTLRLDVELHRHGVNVRHLGKVRFLLMEQNKPEDGLLKDMILTEMIARTLKNILRYFQRTWMKAERSTSEQGMRMLVVRFLNLVTGAHVNS-ATFWKEKVLTGVLQRFGLVSLTTSERRDAQQISRNPVILQACVSKLTEMQGVVLTEDARAHFYADSPVDFEFMVSDIHEINPIVRYMHILDYGGGVMLSMQAQRLMAEGRGNPRAERQVERLNGMAKEFFITAYRSLPDDKNTRKAILSYSKSRGFAL 2211
+ LS DA S F + PD+ N +V EAT ++ +P V E++ + RL +HR G+NVR+LG +R +D LK +ILTE+ ARTLKNI+R R MK +S +V+ F NL+ G ++ W + + + RF +L+ E +D + +N + + ++ M G+ L E + +D P F ++SDI +++ V++M+I+ G LS+Q L G P ++R L +A F A RS PD+K+ + KS +
Sbjct: 462 LQLSSDAFSPFSKIDPDKDMNNDQVKEATEYLVYTCIPQVSEWMDKHVNQIDWYSRLTEIIHREGINVRYLGIIR------ENIKDPKLKRIILTEITARTLKNIMRSELRQKMKLLKSLEADSYIQVVIDFFNLILGDPIDQHLKLWHLDIKSEISSRFEN-TLSNIENQDQFNL-KNEIDIYYLFIRIQNMTGIKLGEVSLKELKSD-PNSFRVVLSDIVKMDVRVKHMNIISLAEGNALSLQCMMLQ----GKPGSQR----LFKLATNRFEEAIRSTPDNKDILNEYANVLKSLALTV 746 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1408.2981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1408.2981.1 >prot_E-fasciculatus_F_contig1408.2981.1 ID=prot_E-fasciculatus_F_contig1408.2981.1|Name=mRNA_E-fasciculatus_F_contig1408.2981.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=379bp MVRGRANVSYRFYPDPDPEPDDGDQQPAASGDSVDRYRFIPLSPDALSCFback to top mRNA from alignment at E-fasciculatus_F_contig1408:461..18050- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1408.2981.1 ID=mRNA_E-fasciculatus_F_contig1408.2981.1|Name=mRNA_E-fasciculatus_F_contig1408.2981.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=17590bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1408:461..18050- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1408:461..18050- >mRNA_E-fasciculatus_F_contig1408.2981.1 ID=mRNA_E-fasciculatus_F_contig1408.2981.1|Name=mRNA_E-fasciculatus_F_contig1408.2981.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2274bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1408:461..18050- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |