mRNA_E-fasciculatus_F_contig14063.2976.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14063.2976.1
Unique NamemRNA_E-fasciculatus_F_contig14063.2976.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14063.2976.1 vs. uniprot
Match: A0A6H5KB17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB17_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.600e-25
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 PFATDAVKTAGQAKSPAGVFGVTVEALSGAFLKTRVVTVWPRFVVRNNLGRSVGVL 168
            PFATDAVKT+GQAKSPAGVFGVTVEALSGAFLKTRVVTVWPRFVVRNNLGR VGVL
Sbjct:  810 PFATDAVKTSGQAKSPAGVFGVTVEALSGAFLKTRVVTVWPRFVVRNNLGRRVGVL 865
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BLAST of mRNA_E-fasciculatus_F_contig14063.2976.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.600e-25
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 PFATDAVKTAGQAKSPAGVFGVTVEALSGAFLKTRVVTVWPRFVVRNNLGRSVGVL 168
            PFATDAVKT+GQAKSPAGVFGVTVEALSGAFLKTRVVTVWPRFV+RNNLGR VGVL
Sbjct: 2772 PFATDAVKTSGQAKSPAGVFGVTVEALSGAFLKTRVVTVWPRFVIRNNLGRKVGVL 2827
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BLAST of mRNA_E-fasciculatus_F_contig14063.2976.1 vs. uniprot
Match: A0A836C889_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C889_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.370e-8
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    4 FATDAVKTAGQAKSPAGVFGVTVEALSGAFLKTRVVTVWPRFVVRNNLGRSVGV 165
            F+ DAV TAG+ ++    FGV + AL G F +TRVVT++PRFVVRN+LG  + V
Sbjct: 4113 FSVDAVSTAGELRAACADFGVAIAALPGLFRRTRVVTLYPRFVVRNDLGMPLQV 4166
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BLAST of mRNA_E-fasciculatus_F_contig14063.2976.1 vs. uniprot
Match: D7G2C7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C7_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 5.240e-6
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    4 FATDAVKTAGQAKSPAGVFGVTVEALSGAFLKTRVVTVWPRFVVRNNLGRSVGVL 168
            F  DA KT G  ++     GV+V AL+G F +TRVVT++PR VVRN LG  + V+
Sbjct:  459 FNVDAAKTGGPLETSGATLGVSVSALTGQFHRTRVVTLYPRLVVRNFLGFPLEVM 513
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BLAST of mRNA_E-fasciculatus_F_contig14063.2976.1 vs. uniprot
Match: A0A6H5KWU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU7_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 7.190e-6
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    4 FATDAVKTAGQAKSPAGVFGVTVEALSGAFLKTRVVTVWPRFVVRNNLGRSVGVL 168
            F  DA KT G  ++     GV+V AL+G F +TRVVT++PR +VRN LG  + V+
Sbjct: 2095 FNVDAAKTGGPLETSGATLGVSVSALTGQFHRTRVVTLYPRLIVRNFLGFPLEVM 2149
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14063.2976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KB17_9PHAE1.600e-2596.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB77_ECTSI1.600e-2594.64SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A836C889_9STRA1.370e-853.70C2 domain-containing protein n=1 Tax=Tribonema min... [more]
D7G2C7_ECTSI5.240e-649.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWU7_9PHAE7.190e-647.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14063contigE-fasciculatus_F_contig14063:597..764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue6.2e-21
Seed eggNOG ortholog2880.D8LB77
KEGG koko:K20476
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG2006@1,KOG2006@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927897.4163742-CDS-E-fasciculatus_F_contig14063:596..7641622927897.4163742-CDS-E-fasciculatus_F_contig14063:596..764Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14063 597..764 +
1695995743.1678312-CDS-E-fasciculatus_F_contig14063:596..7641695995743.1678312-CDS-E-fasciculatus_F_contig14063:596..764Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14063 597..764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14063.2976.1prot_E-fasciculatus_F_contig14063.2976.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14063 597..764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14063.2976.1

>prot_E-fasciculatus_F_contig14063.2976.1 ID=prot_E-fasciculatus_F_contig14063.2976.1|Name=mRNA_E-fasciculatus_F_contig14063.2976.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=56bp
PFATDAVKTAGQAKSPAGVFGVTVEALSGAFLKTRVVTVWPRFVVRNNLG
RSVGVL
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mRNA from alignment at E-fasciculatus_F_contig14063:597..764+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14063.2976.1 ID=mRNA_E-fasciculatus_F_contig14063.2976.1|Name=mRNA_E-fasciculatus_F_contig14063.2976.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=168bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14063:597..764+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGTTCGCGACGGACGCCGTCAAGACCGCGGGCCAGGCCAAGTCGCCGGC
CGGGGTGTTCGGGGTGACGGTGGAGGCCCTCTCGGGCGCCTTCCTCAAGA
CCCGCGTGGTGACCGTCTGGCCCAGGTTCGTGGTCCGCAACAACCTCGGT
CGCAGCGTCGGGGTCCTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14063:597..764+

>mRNA_E-fasciculatus_F_contig14063.2976.1 ID=mRNA_E-fasciculatus_F_contig14063.2976.1|Name=mRNA_E-fasciculatus_F_contig14063.2976.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=336bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14063:597..764+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGTTCGCGACGGACGCCGTCAAGACCGCGGGCCAGGCCAAGTCGCCGGC
CGGGGTGTTCGGGGTGACGGTGGAGGCCCTCTCGGGCGCCTTCCTCAAGA
CCCGCGTGGTGACCGTCTGGCCCAGGTTCGTGGTCCGCAACAACCTCGGT
CGCAGCGTCGGGGTCCTGCCGTTCGCGACGGACGCCGTCAAGACCGCGGG
CCAGGCCAAGTCGCCGGCCGGGGTGTTCGGGGTGACGGTGGAGGCCCTCT
CGGGCGCCTTCCTCAAGACCCGCGTGGTGACCGTCTGGCCCAGGTTCGTG
GTCCGCAACAACCTCGGTCGCAGCGTCGGGGTCCTG
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