mRNA_E-fasciculatus_F_contig14060.2975.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14060.2975.1
Unique NamemRNA_E-fasciculatus_F_contig14060.2975.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14060.2975.1 vs. uniprot
Match: D7FPU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPU3_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.810e-34
Identity = 85/146 (58.22%), Postives = 93/146 (63.70%), Query Frame = 1 
Query:    4 DPDTPWKFRANRRAQEDRKIRAAEQVVLETESSPNKNRAVTNTASKD--DITEHP------PRKGRINATNTTATAVGSAPSNSHKVPTLPLEKPHDPPSGDREGLDSNSTGGDEAEGGIDTAGAGGHEILVDVSRRPARAHRKYA 417
            DPDTPW FR NRRAQED KIRAAE+VV+   S P+  R V  TA+ +  D  E P       RKGRIN  +T   A GSAPSNS K+P L LEK H+    D  G      G D  EGG D  GAGGHEILVDVSRRPARAHRKYA
Sbjct:  292 DPDTPWIFRVNRRAQEDHKIRAAERVVMGATSIPSTTRPVAGTANNEGGDSNEQPLLPSCRSRKGRINTIDTATKAFGSAPSNSDKIPPLRLEKRHNAVRDDDRG------GSDSVEGGSDDGGAGGHEILVDVSRRPARAHRKYA 431
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14060.2975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPU3_ECTSI1.810e-3458.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14060contigE-fasciculatus_F_contig14060:610..1814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size418
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927897.3674076-CDS-E-fasciculatus_F_contig14060:609..9881622927897.3674076-CDS-E-fasciculatus_F_contig14060:609..988Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14060 610..988 -
1695995743.147501-CDS-E-fasciculatus_F_contig14060:609..9881695995743.147501-CDS-E-fasciculatus_F_contig14060:609..988Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14060 610..988 -
1622927897.3812225-CDS-E-fasciculatus_F_contig14060:1776..18141622927897.3812225-CDS-E-fasciculatus_F_contig14060:1776..1814Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14060 1777..1814 -
1695995743.1573102-CDS-E-fasciculatus_F_contig14060:1776..18141695995743.1573102-CDS-E-fasciculatus_F_contig14060:1776..1814Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14060 1777..1814 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14060.2975.1prot_E-fasciculatus_F_contig14060.2975.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14060 610..1814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14060.2975.1

>prot_E-fasciculatus_F_contig14060.2975.1 ID=prot_E-fasciculatus_F_contig14060.2975.1|Name=mRNA_E-fasciculatus_F_contig14060.2975.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=139bp
KDPDTPWKFRANRRAQEDRKIRAAEQVVLETESSPNKNRAVTNTASKDDI
TEHPPRKGRINATNTTATAVGSAPSNSHKVPTLPLEKPHDPPSGDREGLD
SNSTGGDEAEGGIDTAGAGGHEILVDVSRRPARAHRKYA
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mRNA from alignment at E-fasciculatus_F_contig14060:610..1814-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14060.2975.1 ID=mRNA_E-fasciculatus_F_contig14060.2975.1|Name=mRNA_E-fasciculatus_F_contig14060.2975.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1205bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14060:610..1814- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGACCCCGATACCCCGTGGAAGTTCCGGGCCAATAGGTACCGCTGTAG
AGTGCGTTTGGCTAGGCGTTTGGAGTTGTTAGTTTTCCATCAATATTTCT
GTCCGGTACCGCTTGATAACGGGGCGTCCCTGAGTTACCTCTGGATTTTG
ATTCGATGCTTCTTCATTTCCTTTCCTCCATAAAAAGATCTGATTAAAAA
TGCCCGAACTCGACATCAGTAAGTTGATATGTATTGTGCTTCCCAACGTC
GTCGTCGCCACCATGGTCGCCGCCGCCACCGCCGCCGCTGCCCCTTTCAT
CGAGGACCACTCCCCTGCTTCTAGCCCCACTCGCCATAAACATCCAATGT
CGGTCAAACGTTTGTATGACCGGCTGGCGCAAAGAGAGTGTTTGATGCAA
ACTGCTCAACGGCCAGAACATGTGCGTGTCGTCACGTCCTAGAGCTGCCC
CCCCACAGAAACAAACATGGCCGCAGGTGCAACAATGTAAGTTTGTTACA
CCTGTACCACCACTTTTGAATTGACGGCATGAGACTACACTCCTACAAAC
CTTGCGAATCAGGAGTATCACCAACAACCCCGTTGTGCCCGTAGGACCCC
CTTCCCCTCGTATCTACGACGGAACCAAGTTTTAGAGCCGCCCTACGATC
GGGGTCTTTTCAACGATCCCTTGGTGCCCATTCCCCTGTATTTATCCCCC
ACGGTTTCCAGTTATTGTCAGTAAACCCATAAGCTAATGCATCGCCGGCG
TTCATGACTCGTGTCAACGAAGAAATGGTCGCGCGTGGACGGTGTTTCCA
CGCCCTTGTGTTTTCGTCGTGTTCAGGCGGGCGCAGGAAGACCGCAAGAT
AAGAGCGGCGGAACAAGTTGTCCTGGAGACGGAATCGTCACCCAACAAAA
ACAGAGCGGTCACCAATACAGCAAGCAAAGACGACATCACCGAGCACCCG
CCCCGCAAAGGGCGCATCAATGCAACCAACACGACAGCAACCGCCGTCGG
CAGTGCACCGAGCAACAGCCACAAGGTCCCAACACTACCGCTGGAGAAAC
CTCACGACCCTCCAAGTGGCGACCGCGAAGGGTTGGATAGCAATAGTACG
GGAGGAGATGAAGCGGAAGGAGGCATCGATACCGCGGGCGCGGGGGGACA
CGAAATTCTCGTGGATGTCAGCAGGAGACCCGCCCGGGCGCACCGAAAGT
ACGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14060:610..1814-

>mRNA_E-fasciculatus_F_contig14060.2975.1 ID=mRNA_E-fasciculatus_F_contig14060.2975.1|Name=mRNA_E-fasciculatus_F_contig14060.2975.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=834bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14060:610..1814- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGACCCCGATACCCCGTGGAAGTTCCGGGCCAATAGAAGGACCCCGAT
ACCCCGTGGAAGTTCCGGGCCAATAGGCGGGCGCAGGAAGACCGCAAGAT
AAGAGCGGCGGAACAAGTTGTCCTGGAGACGGAATCGTCACCCAACAAAA
ACAGAGCGGTCACCAATACAGCAAGCAAAGACGACATCACCGAGCACCCG
CCCCGCAAAGGGCGCATCAATGCAACCAACACGACAGCAACCGCCGTCGG
CAGTGCACCGAGCAACAGCCACAAGGTCCCAACACTACCGCTGGAGAAAC
CTCACGACCCTCCAAGTGGCGACCGCGAAGGGTTGGATAGCAATAGTACG
GGAGGAGATGAAGCGGAAGGAGGCATCGATACCGCGGGCGCGGGGGGACA
CGAAATTCTCGTGGATGTCAGCAGGAGACCCGCCCGGGCGCACCGAAAGT
ACGCCGCGGGCGCAGGAAGACCGCAAGATAAGAGCGGCGGAACAAGTTGT
CCTGGAGACGGAATCGTCACCCAACAAAAACAGAGCGGTCACCAATACAG
CAAGCAAAGACGACATCACCGAGCACCCGCCCCGCAAAGGGCGCATCAAT
GCAACCAACACGACAGCAACCGCCGTCGGCAGTGCACCGAGCAACAGCCA
CAAGGTCCCAACACTACCGCTGGAGAAACCTCACGACCCTCCAAGTGGCG
ACCGCGAAGGGTTGGATAGCAATAGTACGGGAGGAGATGAAGCGGAAGGA
GGCATCGATACCGCGGGCGCGGGGGGACACGAAATTCTCGTGGATGTCAG
CAGGAGACCCGCCCGGGCGCACCGAAAGTACGCC
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