mRNA_E-fasciculatus_F_contig14051.2971.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14051.2971.1
Unique NamemRNA_E-fasciculatus_F_contig14051.2971.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14051.2971.1 vs. uniprot
Match: D7G1G8_ECTSI (Kinesin light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G8_ECTSI)

HSP 1 Score: 536 bits (1382), Expect = 2.280e-187
Identity = 266/280 (95.00%), Postives = 267/280 (95.36%), Query Frame = 1 
Query:    1 LLQAQGPFDWMSTSSKVKKTFAGLHRRRRVKVSTAEQDAEDRVTASIAAGLSNMPEENQMLYSALCILPPGLPVSCRLLEQVWETGKRTTILAAEAFEHRRLLDRLGPGNFVLHYEAARFLQKPPGFAGEGAWVGCKLRGQGRELAFNRLCKHLDSFDTLRDHLAKRDLWGLTQLWQACEAEAKKTSGHSHVSCRIYESRLDLLRQEADIVAGPASRHRSSTAKVACEATLDLAQALDMVADYQNYRRCCDATPLYRESIDSLHQSLELVGIQGDFLGLL 840
            L QAQGP DW+STSSKVKKTFAGLHRRRRVK STAEQDAEDRVTASIAAG SNMPEE QMLYSALCILPPGLPVSCRLLEQVWETGKRTTILAAEAFEHRRLLDRLGPGNFVLHYEAARFLQ PPGFAGEGAWVGCKLRGQGRELAFNRLCKHLDSFDTLRDHLAKRDLWGLTQLWQACE EAKKTSGHSHVSCRIYESRLDLLRQEADIVAGPASRHRSSTAKVACEATLDLAQALDMVADYQ YRRCCDATPLYRESIDSLHQSLELV IQG   G L
Sbjct:  146 LKQAQGPLDWVSTSSKVKKTFAGLHRRRRVKASTAEQDAEDRVTASIAAGFSNMPEETQMLYSALCILPPGLPVSCRLLEQVWETGKRTTILAAEAFEHRRLLDRLGPGNFVLHYEAARFLQNPPGFAGEGAWVGCKLRGQGRELAFNRLCKHLDSFDTLRDHLAKRDLWGLTQLWQACETEAKKTSGHSHVSCRIYESRLDLLRQEADIVAGPASRHRSSTAKVACEATLDLAQALDMVADYQAYRRCCDATPLYRESIDSLHQSLELVSIQGTGSGAL 425
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BLAST of mRNA_E-fasciculatus_F_contig14051.2971.1 vs. uniprot
Match: A0A6H5KWX2_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX2_9PHAE)

HSP 1 Score: 524 bits (1350), Expect = 1.820e-174
Identity = 260/274 (94.89%), Postives = 263/274 (95.99%), Query Frame = 1 
Query:    1 LLQAQGPFDWMSTSSKVKKTFAGLHRRRRVKVSTAEQDAEDRVTASIAAGLSNMPEENQMLYSALCILPPGLPVSCRLLEQVWETGKRTTILAAEAFEHRRLLDRLGPGNFVLHYEAARFLQKPPGFAGEGAWVGCKLRGQGRELAFNRLCKHLDSFDTLRDHLAKRDLWGLTQLWQACEAEAKKTSGHSHVSCRIYESRLDLLRQEADIVAGPASRHRSSTAKVACEATLDLAQALDMVADYQNYRRCCDATPLYRESIDSLHQSLELVGIQG 822
            L QAQGP DW+STSSKVKKTFAGLHRRRRV  STAEQDAEDRVTASIAAGLSNMPEENQMLYSALCILPPGLPVSCRLLEQVWETGKRTTILAAEAFEHRRLLDRLGPGNFVLHYEAARFLQK  GFAGEGAWVGCKLRGQGRELAFNRLCKHLDSFDTLRDHLAKRDLWGLTQLWQACE EAKKTSGHSHVSCRIYESRLDLLRQEADIVAGPASRH S+TA+VA EATLDLAQALDMVADYQ YRRCCDATPLYRESIDSLHQSLELV IQG
Sbjct:  219 LKQAQGPLDWVSTSSKVKKTFAGLHRRRRVTTSTAEQDAEDRVTASIAAGLSNMPEENQMLYSALCILPPGLPVSCRLLEQVWETGKRTTILAAEAFEHRRLLDRLGPGNFVLHYEAARFLQKSAGFAGEGAWVGCKLRGQGRELAFNRLCKHLDSFDTLRDHLAKRDLWGLTQLWQACETEAKKTSGHSHVSCRIYESRLDLLRQEADIVAGPASRHHSTTARVASEATLDLAQALDMVADYQAYRRCCDATPLYRESIDSLHQSLELVRIQG 492
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14051.2971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1G8_ECTSI2.280e-18795.00Kinesin light chain n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KWX2_9PHAE1.820e-17494.89NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14051contigE-fasciculatus_F_contig14051:8..3101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-07_000970.1
Exons5
Model size840
Cds size810
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14051.2971.1prot_E-fasciculatus_F_contig14051.2971.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14051 38..3101 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927896.9032571-UTR-E-fasciculatus_F_contig14051:7..371622927896.9032571-UTR-E-fasciculatus_F_contig14051:7..37Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14051 8..37 +
1695995742.9638264-UTR-E-fasciculatus_F_contig14051:7..371695995742.9638264-UTR-E-fasciculatus_F_contig14051:7..37Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14051 8..37 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927896.918255-CDS-E-fasciculatus_F_contig14051:37..1841622927896.918255-CDS-E-fasciculatus_F_contig14051:37..184Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14051 38..184 +
1695995742.9729154-CDS-E-fasciculatus_F_contig14051:37..1841695995742.9729154-CDS-E-fasciculatus_F_contig14051:37..184Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14051 38..184 +
1622927896.9350057-CDS-E-fasciculatus_F_contig14051:463..5561622927896.9350057-CDS-E-fasciculatus_F_contig14051:463..556Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14051 464..556 +
1695995742.9818199-CDS-E-fasciculatus_F_contig14051:463..5561695995742.9818199-CDS-E-fasciculatus_F_contig14051:463..556Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14051 464..556 +
1622927896.948144-CDS-E-fasciculatus_F_contig14051:1090..13021622927896.948144-CDS-E-fasciculatus_F_contig14051:1090..1302Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14051 1091..1302 +
1695995742.9906816-CDS-E-fasciculatus_F_contig14051:1090..13021695995742.9906816-CDS-E-fasciculatus_F_contig14051:1090..1302Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14051 1091..1302 +
1622927896.9637406-CDS-E-fasciculatus_F_contig14051:2189..23711622927896.9637406-CDS-E-fasciculatus_F_contig14051:2189..2371Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14051 2190..2371 +
1695995743.0004222-CDS-E-fasciculatus_F_contig14051:2189..23711695995743.0004222-CDS-E-fasciculatus_F_contig14051:2189..2371Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14051 2190..2371 +
1622927896.9826992-CDS-E-fasciculatus_F_contig14051:2925..31011622927896.9826992-CDS-E-fasciculatus_F_contig14051:2925..3101Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14051 2926..3101 +
1695995743.0110087-CDS-E-fasciculatus_F_contig14051:2925..31011695995743.0110087-CDS-E-fasciculatus_F_contig14051:2925..3101Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14051 2926..3101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14051.2971.1

>prot_E-fasciculatus_F_contig14051.2971.1 ID=prot_E-fasciculatus_F_contig14051.2971.1|Name=mRNA_E-fasciculatus_F_contig14051.2971.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=270bp
MSTSSKVKKTFAGLHRRRRVKVSTAEQDAEDRVTASIAAGLSNMPEENQM
LYSALCILPPGLPVSCRLLEQVWETGKRTTILAAEAFEHRRLLDRLGPGN
FVLHYEAARFLQKPPGFAGEGAWVGCKLRGQGRELAFNRLCKHLDSFDTL
RDHLAKRDLWGLTQLWQACEAEAKKTSGHSHVSCRIYESRLDLLRQEADI
VAGPASRHRSSTAKVACEATLDLAQALDMVADYQNYRRCCDATPLYRESI
DSLHQSLELVGIQGDFLGLL
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mRNA from alignment at E-fasciculatus_F_contig14051:8..3101+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14051.2971.1 ID=mRNA_E-fasciculatus_F_contig14051.2971.1|Name=mRNA_E-fasciculatus_F_contig14051.2971.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3094bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14051:8..3101+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTCTGCAGGCGCAGGGCCCCTTCGATTGGATGAGCACTTCTTCGAAGGT
GAAGAAGACGTTCGCCGGGCTTCACCGACGACGAAGGGTGAAGGTGTCGA
CCGCCGAACAGGATGCCGAAGACAGGGTCACGGCGTCCATCGCTGCCGGC
CTCTCCAACATGCCGGAGGAGAACCAGGTGAGTCATCAGGGGGCGGGCTC
CGCGGCAATAAAAGGCTGTGGTGCGGCGCTGTAGAAGCAGAAGGGGGCTC
TGCCTTCCTGGAGCCGCCGTTGTTTATGTGCGCGTTTTATTGGCATGGAC
CGCTGTTCCTGTCACATCTGCTGCTGCTGCTGCTGCTGCTGTGTCTCGTG
GCAAGTCATCTCCAAGATGATGCCGTTTGTTCCAAATCAGGCAGGCGATT
GCGCACGTTCACAGAGCCGTTGTCCTCGCCCCCATCCCGTGCCTGTGTCG
ATGTAGATGCTTTACTCGGCGCTTTGCATCCTACCCCCGGGGCTGCCGGT
CAGCTGTCGCCTGCTGGAACAAGTGTGGGAGACCGGAAAAAGGACGACGG
TGAGCGGGGGGTGGGGGCTCCGTCATATCATGTGCTTGCTTTTTTGGCAT
GTAGTGATGGTGTCACCTGTGTTTCTCCATTACCGAGGATGTCCCTGCTT
TTTAGTGTCCGCATTATCGTTGCTTGTTTTTTTGGTTTGCAGTCTCATCT
CATTGTCACCTGTGTTTCTCTTCTCTGTGAGTGATCCCGCTGCTATGCAT
AGTGTCTCTGCTGTTGGAGTGCCGCGTCTACGTCGGGGTTCAGCCCCCGA
CAACGTCACCGAAGCGTTCTAGCACGACCGAGTGTCTCACCTATATTAAC
ACACATACCATACCCCTTTGCTGTTTTTGGGTTACGGACTCTTGGAGTCC
ATTTTACTTTTGAGTATTCCCTTTTCGGGGTAGTTGGCCTGTGACCACGG
GAATCAATCGACCGCGGCAAGTGCTAGATCAGTACAGGCAAAGGGAGGTA
CTGGATAGAGAGATCGGAACGTTTTTTTTAATGTGAGGACAACAACAACA
ACGACCCTCCCATTTTTGTCGTTTGTTTATCAGATTCTCGCAGCAGAGGC
GTTCGAGCACCGTAGGCTGCTCGATCGGCTGGGACCAGGGAACTTTGTAC
TCCACTATGAGGCGGCTCGCTTCTTGCAGAAACCCCCGGGCTTCGCGGGG
GAAGGGGCGTGGGTTGGGTGCAAGCTGCGCGGACAAGGGAGGGAGCTGGC
GTTCAACAGGCTCTGCAAGCACCTCGACAGCTTCGACACGCTCAGGTATG
AAGTGGATGTTGAATCTCCGATGGTGTTTGTCTTTTTTTTCTCTTTTGTC
TGTCCTGTCTTGTTCTCTTTTCTCTCTTTTGTGTTTTTTCTGTCTCTTCT
GTCTCTTCTCTCTTTTTTTTCTCTGCTGTCTTCTGTCTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTATTTTCTGTAT
TTTCTGCTGTCTTTGCTGTCGTTGCTGTCTGTCTTTGTTGTCTGTTTTGT
CTTTTCTGTATTTATGTCTTTTATGTCTTTTTTGTCTTTCATGTCTTTGT
GGTCGTATGTGTCTTTTATGTATTTATCGTCTTTTTCGTCTTTTCTGTCT
TTTCTCTTCTGTTTGTTTTGCCTTTTCAGTGCTTGTCTTTTTTGTCTTTT
ATATCTTTTTCGTCTTCGCTGTCTCTTCTGTATTTAAAGTCTTTTTCGTC
TTTTGTGTCTTTTTCTGTCTTTGTTGTCTTTTCTGTCTTTTCTGTCTCTT
CTGTTTGTCATGCCTTTTCAGTATTTTTGTCTTTTTCGTCTTTTCTGTCT
TTTTCGTCTTTTCTGTCTTTTTCGTCTTTTCTGCTTTTTTTGTCTTTTTC
ATCTGTTCTGTCTTTTCTGTCTTGTCTGTCTGTCTCTTTTTCCCGTCTCT
GTCTCTGTTTGTCTGTCTGTGTCTCTCCCTCCCTCTCTCCCTCCTTCCCT
GTCGCCTTCTGTCTCTGTCTTTCTCTCTTTCTCCCTCTCTGTGTGTCTTT
CTCTCTCTCTCTGTCTCTCTATCTCCCCCTCCCCACCCCTCCCCTCGCGT
ACCCTGGTAGCACTCATTCTGTCCATTCTATTGCCCGCTCCCATCTCATC
TACCTTCGTGTATCTCCTCCTTGACGGCGCAGGGACCATCTCGCCAAGCG
GGACCTGTGGGGCCTAACGCAGCTGTGGCAGGCCTGCGAGGCGGAGGCCA
AGAAGACGTCGGGACACAGCCACGTCTCGTGCCGAATCTACGAGTCTCGC
CTCGATCTCCTACGACAGGAGGCGGACATTGTCGCCGGACCCGCCAGCAG
ACATCGGTCGTCCAGTGAGTAGGCAACGATATACCCTTCTTTTTTTTTGG
AAACTGGTCATCCAGTAAGCAGCATGAGATTGTGTTTTTGTTGCCTATAT
TTGTATGTGTAATCCAATTCCCGACCTTGCCAGCTGACATTGATTGTTCC
GGGGGCAAGCAGGGTGGCAGTTTTTTTTTTTTTATCTTTACTGTCTTGTG
TGTGCGAAGCTCAACAATCGGGAAAGGTGTGATGTACACTGGCACCCGCA
GCAGTAGATACAACGGACTTTTGGCCTGTGTTGCTGGGAAGCGTGCGCGG
ACCAGCGCTGGTGTATCTCTCATGTACAAGTACCTCCCGTCTCCTGTTCT
CTTTCTCGGCGCAGGGTATGTAGGAGTGCAACAGCGAGGCGCCACGTTGT
GCTGTGGCTAGTAGTTCGCTGTCTTCCCCCGTGTATCATGGTCGAGTTTT
TTGTAGACGATTGTTCGCCATCCATGATCTCTTGAGTTTTTTCTCGTCTC
ATCCCACCCCCATCCGCGCTGTGTTTTTTGTTTTTAATGCTGTTGTTTTT
TAACGCACTCTCGAACAGCTGCAAAGGTGGCCTGCGAGGCTACCCTGGAC
CTGGCGCAGGCGCTTGACATGGTGGCTGACTACCAAAATTACCGCCGCTG
CTGCGACGCCACCCCTCTCTACAGGGAGAGCATTGACTCTCTCCACCAAT
CGCTTGAGCTGGTTGGCATCCAAGGTGATTTTCTCGGCTTGCTA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14051:8..3101+

>mRNA_E-fasciculatus_F_contig14051.2971.1 ID=mRNA_E-fasciculatus_F_contig14051.2971.1|Name=mRNA_E-fasciculatus_F_contig14051.2971.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1620bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14051:8..3101+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGCACTTCTTCGAAGGTGAAGAAGACGTTCGCCGGGCTTCACCGACG
ACGAAGGGTGAAGGTGTCGACCGCCGAACAGGATGCCGAAGACAGGGTCA
CGGCGTCCATCGCTGCCGGCCTCTCCAACATGCCGGAGGAGAACCAGATG
AGCACTTCTTCGAAGGTGAAGAAGACGTTCGCCGGGCTTCACCGACGACG
AAGGGTGAAGGTGTCGACCGCCGAACAGGATGCCGAAGACAGGGTCACGG
CGTCCATCGCTGCCGGCCTCTCCAACATGCCGGAGGAGAACCAGATGCTT
TACTCGGCGCTTTGCATCCTACCCCCGGGGCTGCCGGTCAGCTGTCGCCT
GCTGGAACAAGTGTGGGAGACCGGAAAAAGGACGACGATGCTTTACTCGG
CGCTTTGCATCCTACCCCCGGGGCTGCCGGTCAGCTGTCGCCTGCTGGAA
CAAGTGTGGGAGACCGGAAAAAGGACGACGATTCTCGCAGCAGAGGCGTT
CGAGCACCGTAGGCTGCTCGATCGGCTGGGACCAGGGAACTTTGTACTCC
ACTATGAGGCGGCTCGCTTCTTGCAGAAACCCCCGGGCTTCGCGGGGGAA
GGGGCGTGGGTTGGGTGCAAGCTGCGCGGACAAGGGAGGGAGCTGGCGTT
CAACAGGCTCTGCAAGCACCTCGACAGCTTCGACACGCTCAGATTCTCGC
AGCAGAGGCGTTCGAGCACCGTAGGCTGCTCGATCGGCTGGGACCAGGGA
ACTTTGTACTCCACTATGAGGCGGCTCGCTTCTTGCAGAAACCCCCGGGC
TTCGCGGGGGAAGGGGCGTGGGTTGGGTGCAAGCTGCGCGGACAAGGGAG
GGAGCTGGCGTTCAACAGGCTCTGCAAGCACCTCGACAGCTTCGACACGC
TCAGGGACCATCTCGCCAAGCGGGACCTGTGGGGCCTAACGCAGCTGTGG
CAGGCCTGCGAGGCGGAGGCCAAGAAGACGTCGGGACACAGCCACGTCTC
GTGCCGAATCTACGAGTCTCGCCTCGATCTCCTACGACAGGAGGCGGACA
TTGTCGCCGGACCCGCCAGCAGACATCGGTCGTCCAGGACCATCTCGCCA
AGCGGGACCTGTGGGGCCTAACGCAGCTGTGGCAGGCCTGCGAGGCGGAG
GCCAAGAAGACGTCGGGACACAGCCACGTCTCGTGCCGAATCTACGAGTC
TCGCCTCGATCTCCTACGACAGGAGGCGGACATTGTCGCCGGACCCGCCA
GCAGACATCGGTCGTCCACTGCAAAGGTGGCCTGCGAGGCTACCCTGGAC
CTGGCGCAGGCGCTTGACATGGTGGCTGACTACCAAAATTACCGCCGCTG
CTGCGACGCCACCCCTCTCTACAGGGAGAGCATTGACTCTCTCCACCAAT
CGCTTGAGCTGGTTGGCATCCAAGGTGATTTTCTCGGCTTGCTACTGCAA
AGGTGGCCTGCGAGGCTACCCTGGACCTGGCGCAGGCGCTTGACATGGTG
GCTGACTACCAAAATTACCGCCGCTGCTGCGACGCCACCCCTCTCTACAG
GGAGAGCATTGACTCTCTCCACCAATCGCTTGAGCTGGTTGGCATCCAAG
GTGATTTTCTCGGCTTGCTA
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