mRNA_E-fasciculatus_F_contig1405.2970.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1405.2970.1
Unique NamemRNA_E-fasciculatus_F_contig1405.2970.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1405.2970.1 vs. uniprot
Match: D7FL33_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL33_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 5.520e-31
Identity = 157/200 (78.50%), Postives = 159/200 (79.50%), Query Frame = 1 
Query:  523 MGRQXXXXXXXSAPERGAAGRAAQQTREAGLVSAGPGSARRSXXXXXXXXXXXXXXXXXXXXXGTLSXXXXXXXXXGYGDXXXXXXXXXXXXXXXXXXXXXXXX---LCVGVAWTXXXXXXXXXXXXXXXXXXXALEAAAACALLGTVVLAAIALCLGLPTWSRSRNQDNCTDSEWWCCWLWRRGGDETDDEGGKLAHVG 1113
            MGR+       SAPERGA GRAAQQ REAGLVSAG       XXXXXXXXXXXXXXXXXXXXX    XXXXXXXXX    XXXXXXXXXXXXXXXXXXXXX      LCVGVAWT  XXXXXXXXXXXXXXXX ALEAAA CALLG  VLAAIALCLGLPT   SRN+D  TDSEWWCCWLWRRGGDETDDEGGKLAHVG
Sbjct:    1 MGRRWWPGSDGSAPERGAEGRAAQQAREAGLVSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQHGCCLCVGVAWTAAXXXXXXXXXXXXXXXXEALEAAAXCALLGAAVLAAIALCLGLPT--LSRNED--TDSEWWCCWLWRRGGDETDDEGGKLAHVG 196
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1405.2970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FL33_ECTSI5.520e-3178.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1405contigE-fasciculatus_F_contig1405:15666..18266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1113
Cds size1113
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1405.2970.1prot_E-fasciculatus_F_contig1405.2970.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1405 15666..18266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927896.4753168-CDS-E-fasciculatus_F_contig1405:15665..160091622927896.4753168-CDS-E-fasciculatus_F_contig1405:15665..16009Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1405 15666..16009 +
1695995742.750959-CDS-E-fasciculatus_F_contig1405:15665..160091695995742.750959-CDS-E-fasciculatus_F_contig1405:15665..16009Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1405 15666..16009 +
1622927896.487773-CDS-E-fasciculatus_F_contig1405:16892..171191622927896.487773-CDS-E-fasciculatus_F_contig1405:16892..17119Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1405 16893..17119 +
1695995742.7592404-CDS-E-fasciculatus_F_contig1405:16892..171191695995742.7592404-CDS-E-fasciculatus_F_contig1405:16892..17119Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1405 16893..17119 +
1622927896.4978456-CDS-E-fasciculatus_F_contig1405:17724..182661622927896.4978456-CDS-E-fasciculatus_F_contig1405:17724..18266Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1405 17725..18266 +
1695995742.7676165-CDS-E-fasciculatus_F_contig1405:17724..182661695995742.7676165-CDS-E-fasciculatus_F_contig1405:17724..18266Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1405 17725..18266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1405.2970.1

>prot_E-fasciculatus_F_contig1405.2970.1 ID=prot_E-fasciculatus_F_contig1405.2970.1|Name=mRNA_E-fasciculatus_F_contig1405.2970.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=371bp
MEGKAGDGYLVGVSPRSTPPSRRKTLTQLVQEERLGSLKYLITSSPPSRN
NSSRPRAAAPTPGRGAATPASGPNRGTRHSRRSSRGSNEEAAAVDSVSRS
RGLFSSAPNASSDDSGRRPPFGNGKGNGKGNGKGKGSYAYDDVYRLSIGT
LERAPAVGSSSQQINSSSSAWAGQMGRQGSPGSDGSAPERGAAGRAAQQT
REAGLVSAGPGSARRSSGGGSSSRRASSGDGDSSAGVGTLSSGEDNNSFF
GYGDNVDDDNDDYDGAFSRRRRLQNGCCLCVGVAWTAALLLCLASGGSTA
WGGGEALEAAAACALLGTVVLAAIALCLGLPTWSRSRNQDNCTDSEWWCC
WLWRRGGDETDDEGGKLAHVG
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mRNA from alignment at E-fasciculatus_F_contig1405:15666..18266+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1405.2970.1 ID=mRNA_E-fasciculatus_F_contig1405.2970.1|Name=mRNA_E-fasciculatus_F_contig1405.2970.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2601bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1405:15666..18266+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAAGGAAAGGCAGGAGATGGTTACCTTGTAGGTGTCTCTCCCCGGAG
CACGCCGCCCTCGAGACGAAAGACCCTCACCCAGCTCGTCCAAGAAGAGC
GGCTGGGCTCCCTCAAGTACCTCATAACGTCAAGCCCGCCCTCTCGCAAC
AACAGCAGCAGACCGCGAGCCGCTGCACCCACTCCAGGCAGAGGTGCTGC
CACCCCTGCGAGCGGGCCGAACAGGGGGACGAGGCACTCGCGAAGGTCTT
CCAGGGGGAGCAACGAGGAAGCGGCAGCGGTTGATTCGGTTTCCCGGAGC
CGAGGGCTCTTCTCCTCTGCCCCAAACGCGTCCTCTGACGACAGGTGGGT
TGGGAGTTGGGAGTTGTGCCGAGAGTTGGGTTGGGTTGGGTTGGGTTTTA
CGTGATGATGACAGAGGGTGCTTCACAGCTTGACAGCAGTCCGGGCAGTC
ACTGCTCGGCTGTTGCTGTGGATGTGCAACATGTTGAATCGACGATAACC
AGGCCACAATTGATGCACATCATGCCGGCGAGAAAACAAGATGACAAGAT
ACAAGACTATTATATTGAATGGCGGAAGGTGCATGTACAACAGCACCACG
TTGTGCCCCAAACGTATGCATTCGACTCTAGTATATACATACGCGTACGC
GTATGCGTGTAGCAAGCAATCGCCACATCGAACACGTGATGTCCAGCAAA
CAGCGGCAGCATTCGACCATAATAAGGATTCCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTTGAGGTCTCGTTGGTGTTAAATCGAGGCAAAGCTGTCTG
TCTGTCGGTGGGATTTGGTTGGCAGCGTACCGTTGCCTCACCTCACCTTG
CCATGTAGTCTACTGGCTGTACCCAGCCCTGCCCTTAGCATACATGCCGG
CGAAGTGAAGGTACGCCGCAGCCACCACTGCTGCTGCTGTCTCAACAGCT
TCGTTGGTGGAAAAAATAAAATGACGCGCTACCTACTGCTGTATGCATAT
ATAGCCCTAACTAAGATTCGACTAAAAAGTTTGCCGGCTGTGCATGGAAC
TGCAGCAGCAGTCCTTCAGTCCTTCACCAACTACTGCGATCCCGCAGTAA
ACACAAGGCATTGATTGACCCGTGTTCAATCTCGATTCGTTTCTCCATCG
ACTGGATATGCATATCCCGAACGTTTACGTACGGCGCACATAAGACCAAG
GCCTCAAACCTCATCGGTGTCCAGCAGCGGCCGTCGACCGCCGTTCGGCA
ACGGCAAGGGCAACGGCAAGGGCAACGGCAAGGGCAAGGGCAGCTATGCA
TACGATGACGTGTACCGCCTCTCCATCGGCACCCTCGAGCGAGCTCCGGC
GGTGGGCAGCAGCAGCCAACAAATCAACAGCAGTTCATCAGCATGGGCGG
GGCAGATGGGACGCCAGGGGTCGCCCGGGTCCGACGGATCGGCACCGGAA
CGAGGTATCGCTGGCCGACAATGTTCTTGAACTGACAAAATGAAAAAAAT
CTGGTTTCGGGGTTGGTTTCTTGCAAGGATTGACTGCTGACTGCCTGTTC
AGCGTGCTCTCGTTCTATGCATAGTGATGTGTACTACTGAAGCGTTGTCA
AGCTTTACCAAAGAGCTCTCCTGCCGGTTGCGTTTGGTAGATTTGCAGAT
GAATTCGTGGCAACGACCCCCCTCCCCCCTCCCAATAGATATAGACATGC
AGGACCTTGTTTCAGGTATAGACTATACGTGTGCGAGGGTGTCAGAGATC
ATGAGGCAGCTGACTGATGCTTCAATCCAACACCAACTGCGCGTAGGAAT
AGTGTACCGCGTAGGATTAGTCTAATTCGCTTGATACTGTGTATGTGCCG
TCGAGAGGACGATGACCCGCACACTAATCCTGTTGTGCTGAAGCGCCACT
CTTGTATGAATAGATGTCCATCAGTGGCTTGCAAATGGAATGCCTTAATA
AAAAACCAGGCACAAGTGTCCCACGCAAGCGATTTGTAAGCTGATTGTGT
TGGTGATGCTGCTGCCGCTGCTGCTGCCGTCGTCTTTTCCCGGCATGCAC
GTGCGAAAGGAGCGGCGGGGCGCGCGGCCCAGCAGACGAGGGAGGCCGGG
CTGGTCTCCGCGGGGCCGGGATCAGCTAGAAGGTCGTCAGGCGGTGGTAG
TTCCAGCCGCAGAGCTAGCAGCGGCGACGGTGACAGCAGTGCTGGTGTCG
GAACTCTGAGCAGCGGCGAGGACAACAACTCGTTTTTCGGTTACGGGGAC
AACGTCGACGACGACAATGACGACTACGACGGGGCTTTCTCCCGACGAAG
ACGGCTGCAGAACGGGTGCTGTCTCTGTGTTGGAGTGGCGTGGACGGCCG
CGCTTCTCCTTTGCCTCGCGAGCGGGGGGTCTACAGCTTGGGGCGGCGGC
GAAGCCTTGGAGGCGGCAGCCGCCTGCGCCTTGCTCGGGACCGTGGTGCT
TGCGGCGATAGCGCTGTGCTTAGGGCTGCCGACTTGGTCACGGTCACGGA
ACCAAGATAATTGTACTGACAGCGAGTGGTGGTGCTGCTGGTTATGGAGG
AGGGGGGGCGACGAAACGGATGACGAGGGGGGAAAGCTGGCGCACGTCGG
C
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1405:15666..18266+

>mRNA_E-fasciculatus_F_contig1405.2970.1 ID=mRNA_E-fasciculatus_F_contig1405.2970.1|Name=mRNA_E-fasciculatus_F_contig1405.2970.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2226bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1405:15666..18266+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAAGGAAAGGCAGGAGATGGTTACCTTGTAGGTGTCTCTCCCCGGAG
CACGCCGCCCTCGAGACGAAAGACCCTCACCCAGCTCGTCCAAGAAGAGC
GGCTGGGCTCCCTCAAGTACCTCATAACGTCAAGCCCGCCCTCTCGCAAC
AACAGCAGCAGACCGCGAGCCGCTGCACCCACTCCAGGCAGAGGTGCTGC
CACCCCTGCGAGCGGGCCGAACAGGGGGACGAGGCACTCGCGAAGGTCTT
CCAGGGGGAGCAACGAGGAAGCGGCAGCGGTTGATTCGGTTTCCCGGAGC
CGAGGGCTCTTCTCCTCTGCCCCAAACGCGTCCTCTGACGACAGATGGAA
GGAAAGGCAGGAGATGGTTACCTTGTAGGTGTCTCTCCCCGGAGCACGCC
GCCCTCGAGACGAAAGACCCTCACCCAGCTCGTCCAAGAAGAGCGGCTGG
GCTCCCTCAAGTACCTCATAACGTCAAGCCCGCCCTCTCGCAACAACAGC
AGCAGACCGCGAGCCGCTGCACCCACTCCAGGCAGAGGTGCTGCCACCCC
TGCGAGCGGGCCGAACAGGGGGACGAGGCACTCGCGAAGGTCTTCCAGGG
GGAGCAACGAGGAAGCGGCAGCGGTTGATTCGGTTTCCCGGAGCCGAGGG
CTCTTCTCCTCTGCCCCAAACGCGTCCTCTGACGACAGCGGCCGTCGACC
GCCGTTCGGCAACGGCAAGGGCAACGGCAAGGGCAACGGCAAGGGCAAGG
GCAGCTATGCATACGATGACGTGTACCGCCTCTCCATCGGCACCCTCGAG
CGAGCTCCGGCGGTGGGCAGCAGCAGCCAACAAATCAACAGCAGTTCATC
AGCATGGGCGGGGCAGATGGGACGCCAGGGGTCGCCCGGGTCCGACGGAT
CGGCACCGGAACGAGCGGCCGTCGACCGCCGTTCGGCAACGGCAAGGGCA
ACGGCAAGGGCAACGGCAAGGGCAAGGGCAGCTATGCATACGATGACGTG
TACCGCCTCTCCATCGGCACCCTCGAGCGAGCTCCGGCGGTGGGCAGCAG
CAGCCAACAAATCAACAGCAGTTCATCAGCATGGGCGGGGCAGATGGGAC
GCCAGGGGTCGCCCGGGTCCGACGGATCGGCACCGGAACGAGGAGCGGCG
GGGCGCGCGGCCCAGCAGACGAGGGAGGCCGGGCTGGTCTCCGCGGGGCC
GGGATCAGCTAGAAGGTCGTCAGGCGGTGGTAGTTCCAGCCGCAGAGCTA
GCAGCGGCGACGGTGACAGCAGTGCTGGTGTCGGAACTCTGAGCAGCGGC
GAGGACAACAACTCGTTTTTCGGTTACGGGGACAACGTCGACGACGACAA
TGACGACTACGACGGGGCTTTCTCCCGACGAAGACGGCTGCAGAACGGGT
GCTGTCTCTGTGTTGGAGTGGCGTGGACGGCCGCGCTTCTCCTTTGCCTC
GCGAGCGGGGGGTCTACAGCTTGGGGCGGCGGCGAAGCCTTGGAGGCGGC
AGCCGCCTGCGCCTTGCTCGGGACCGTGGTGCTTGCGGCGATAGCGCTGT
GCTTAGGGCTGCCGACTTGGTCACGGTCACGGAACCAAGATAATTGTACT
GACAGCGAGTGGTGGTGCTGCTGGTTATGGAGGAGGGGGGGCGACGAAAC
GGATGACGAGGGGGGAAAGCTGGCGCACGTCGGCGAGCGGCGGGGCGCGC
GGCCCAGCAGACGAGGGAGGCCGGGCTGGTCTCCGCGGGGCCGGGATCAG
CTAGAAGGTCGTCAGGCGGTGGTAGTTCCAGCCGCAGAGCTAGCAGCGGC
GACGGTGACAGCAGTGCTGGTGTCGGAACTCTGAGCAGCGGCGAGGACAA
CAACTCGTTTTTCGGTTACGGGGACAACGTCGACGACGACAATGACGACT
ACGACGGGGCTTTCTCCCGACGAAGACGGCTGCAGAACGGGTGCTGTCTC
TGTGTTGGAGTGGCGTGGACGGCCGCGCTTCTCCTTTGCCTCGCGAGCGG
GGGGTCTACAGCTTGGGGCGGCGGCGAAGCCTTGGAGGCGGCAGCCGCCT
GCGCCTTGCTCGGGACCGTGGTGCTTGCGGCGATAGCGCTGTGCTTAGGG
CTGCCGACTTGGTCACGGTCACGGAACCAAGATAATTGTACTGACAGCGA
GTGGTGGTGCTGCTGGTTATGGAGGAGGGGGGGCGACGAAACGGATGACG
AGGGGGGAAAGCTGGCGCACGTCGGC
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