mRNA_E-fasciculatus_F_contig14049.2967.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14049.2967.1
Unique NamemRNA_E-fasciculatus_F_contig14049.2967.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14049.2967.1 vs. uniprot
Match: D8LSU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU3_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 2.120e-66
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 3
Query:    3 RLRILAGVGMYAARAWDNHDLLHQCMEVERDSHWWHVLTSLGIAFDNRGFSRTDRSQVPGEYQKSLVPALLERSGCDLGLALEFCERYGVGEAFPCLLYVDNQLGL 320
            RLR+LAGVGMYAARAWDNHDLLHQCMEVERDSHWWHVLTSLGIAFDNRGFSR DRSQVPGEYQKSLVPALLERSGCDLGLALEFCERYGVGEAFPCLLYVDNQLGL
Sbjct: 1871 RLRVLAGVGMYAARAWDNHDLLHQCMEVERDSHWWHVLTSLGIAFDNRGFSRADRSQVPGEYQKSLVPALLERSGCDLGLALEFCERYGVGEAFPCLLYVDNQLGL 1976          
BLAST of mRNA_E-fasciculatus_F_contig14049.2967.1 vs. uniprot
Match: A0A6H5KS52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS52_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 3.050e-66
Identity = 104/106 (98.11%), Postives = 104/106 (98.11%), Query Frame = 3
Query:    3 RLRILAGVGMYAARAWDNHDLLHQCMEVERDSHWWHVLTSLGIAFDNRGFSRTDRSQVPGEYQKSLVPALLERSGCDLGLALEFCERYGVGEAFPCLLYVDNQLGL 320
            RLRILAGVGMYAARAWDNHDLLHQCMEVERDSHWWHVLTSLGI FDNRGFSR DRSQVPGEYQKSLVPALLERSGCDLGLALEFCERYGVGEAFPCLLYVDNQLGL
Sbjct:  432 RLRILAGVGMYAARAWDNHDLLHQCMEVERDSHWWHVLTSLGITFDNRGFSRADRSQVPGEYQKSLVPALLERSGCDLGLALEFCERYGVGEAFPCLLYVDNQLGL 537          
BLAST of mRNA_E-fasciculatus_F_contig14049.2967.1 vs. uniprot
Match: A0A4P9YCU7_ROZAC (Uncharacterized protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A4P9YCU7_ROZAC)

HSP 1 Score: 72.0 bits (175), Expect = 1.090e-12
Identity = 33/104 (31.73%), Postives = 54/104 (51.92%), Query Frame = 3
Query:    3 RLRILAGVGMYAARAWDNHDLLHQCMEVERDSHWWHVLTSLGIAFDNRGFSRTDRSQVPGEYQKSLVPALLERSGCDLGLALEFCERYGVGEAFPCLLYVDNQL 314
            RL  LA +GM     W+       C ++E++  WW+ L  L I FDN  F    R+   GEYQK+L+P +LE+S  D+    ++CE + + + F    ++   +
Sbjct:  173 RLIKLASIGMACGNLWNQRSFFVDCQQLEKNGIWWYHLNLLEIPFDNVKF----RTSKFGEYQKTLIPMILEKSDLDISSVKDYCECFDINKDFAYFEFIQQSI 272          
BLAST of mRNA_E-fasciculatus_F_contig14049.2967.1 vs. uniprot
Match: A0A075AYK9_ROZAC (Uncharacterized protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075AYK9_ROZAC)

HSP 1 Score: 72.0 bits (175), Expect = 1.860e-12
Identity = 33/104 (31.73%), Postives = 54/104 (51.92%), Query Frame = 3
Query:    3 RLRILAGVGMYAARAWDNHDLLHQCMEVERDSHWWHVLTSLGIAFDNRGFSRTDRSQVPGEYQKSLVPALLERSGCDLGLALEFCERYGVGEAFPCLLYVDNQL 314
            RL  LA +GM     W+       C ++E++  WW+ L  L I FDN  F    R+   GEYQK+L+P +LE+S  D+    ++CE + + + F    ++   +
Sbjct: 1055 RLIKLASIGMACGNLWNQRSFFVDCQQLEKNGIWWYHLNVLEIPFDNVKF----RTSKFGEYQKTLIPMILEKSDLDISSVKDYCECFDINKDFAYFEFIQQSI 1154          
BLAST of mRNA_E-fasciculatus_F_contig14049.2967.1 vs. uniprot
Match: A0A507FKD6_9FUNG (Rod_C domain-containing protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FKD6_9FUNG)

HSP 1 Score: 68.6 bits (166), Expect = 3.080e-11
Identity = 33/104 (31.73%), Postives = 55/104 (52.88%), Query Frame = 3
Query:    3 RLRILAGVGMYAARAWDNHDLLHQCMEVERDSHWWHVLTSLGIAFDNRGFSRTDRSQVPGEYQKSLVPALLERSGCDLGLALEFCERYGVGEAFPCLLYVDNQL 314
            RL   A +G+ A+ AW+       C  + +++ WWH L  L ++F+   +    +    GEYQ+ LVPALLE++G D+  +L+F   Y + + F    Y+   L
Sbjct: 1574 RLLKFAAIGIAASLAWNQRTFQVTCETLAKNAKWWHQLHLLNVSFNMDQY----KLSTSGEYQRRLVPALLEKTGLDIMTSLDFARTYNIEDDFVIFEYITQLL 1673          
BLAST of mRNA_E-fasciculatus_F_contig14049.2967.1 vs. uniprot
Match: A0A1Y1YCH8_9FUNG (Rod_C domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YCH8_9FUNG)

HSP 1 Score: 63.9 bits (154), Expect = 1.290e-9
Identity = 33/100 (33.00%), Postives = 50/100 (50.00%), Query Frame = 3
Query:    3 RLRILAGVGMYAARAWDNHDLLHQCMEVERDSHWWHVLTSLGIAFDNRGFSRTDRSQVPGEYQKSLVPALLERSGCDLGLALEFCERYGVGEAFPCLLYV 302
            RL   A +G+  A  W+       C ++  ++ WWH L  L I FD+  F    R+    EYQ+ LVP L+E++  D+   LEF   Y + + +  L YV
Sbjct: 1496 RLIKFAAIGIGCATVWEQRGFYVNCKQLGANARWWHQLKILDIPFDDAQF----RASKHSEYQRKLVPLLMEKTNLDILTVLEFGRAYDLEDDYSYLEYV 1591          
BLAST of mRNA_E-fasciculatus_F_contig14049.2967.1 vs. uniprot
Match: F4PEL7_BATDJ (Rod_C domain-containing protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4PEL7_BATDJ)

HSP 1 Score: 58.2 bits (139), Expect = 1.370e-7
Identity = 30/104 (28.85%), Postives = 51/104 (49.04%), Query Frame = 3
Query:    3 RLRILAGVGMYAARAWDNHDLLHQCMEVERDSHWWHVLTSLGIAFDNRGFSRTDRSQVPGEYQKSLVPALLERSGCDLGLALEFCERYGVGEAFPCLLYVDNQL 314
            RL  +A VG  A   W  HD    C  +   + WW  L  L I FD   +    ++ V G+YQ+ L+P +L+++  DL   L F + Y + +    + +++ Q+
Sbjct: 1417 RLERVAKVGAMAGLVWSQHDFQANCQRLAVHAGWWQELQVLEIPFDQAKY----QASVNGDYQRELIPHILQKTDGDLETTLAFSQYYHIED----IRFINEQI 1512          
BLAST of mRNA_E-fasciculatus_F_contig14049.2967.1 vs. uniprot
Match: A0A4P9Z0X2_9FUNG (Rough deal protein C-terminal region-domain-containing protein n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z0X2_9FUNG)

HSP 1 Score: 57.0 bits (136), Expect = 3.370e-7
Identity = 31/117 (26.50%), Postives = 51/117 (43.59%), Query Frame = 3
Query:    3 RLRILAGVGMYAARAWDNHDLLHQCMEVERDSHWWHVLTSLG-------------IAFDNRGFSRTDRSQVPGEYQKSLVPALLERSGCDLGLALEFCERYGVGEAFPCLLYVDNQL 314
            RL  LA +G+  A  W     +  C ++  +++WW     LG             + F +  F     SQ  G+YQ++L+P LLER+  D  +  E+ + Y + E   C   +   L
Sbjct:  192 RLAQLASLGVICAAQWKQRTFMADCRQLAVNAYWWRQFRRLGAWQHASMAMTRGCMEFSDNAFRA---SQSTGDYQRTLLPTLLERAAWDTSVVFEYADAYQLDEDETCFACLHTML 305          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14049.2967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LSU3_ECTSI2.120e-6698.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KS52_9PHAE3.050e-6698.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4P9YCU7_ROZAC1.090e-1231.73Uncharacterized protein n=1 Tax=Rozella allomycis ... [more]
A0A075AYK9_ROZAC1.860e-1231.73Uncharacterized protein n=1 Tax=Rozella allomycis ... [more]
A0A507FKD6_9FUNG3.080e-1131.73Rod_C domain-containing protein n=1 Tax=Chytriomyc... [more]
A0A1Y1YCH8_9FUNG1.290e-933.00Rod_C domain-containing protein n=1 Tax=Basidiobol... [more]
F4PEL7_BATDJ1.370e-728.85Rod_C domain-containing protein n=2 Tax=Batrachoch... [more]
A0A4P9Z0X2_9FUNG3.370e-726.50Rough deal protein C-terminal region-domain-contai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14049contigE-fasciculatus_F_contig14049:2184..3077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size324
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927896.4045284-CDS-E-fasciculatus_F_contig14049:2185..23581622927896.4045284-CDS-E-fasciculatus_F_contig14049:2185..2358Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14049 2186..2358 -
1695995742.7282634-CDS-E-fasciculatus_F_contig14049:2185..23581695995742.7282634-CDS-E-fasciculatus_F_contig14049:2185..2358Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14049 2186..2358 -
1622927896.4266376-CDS-E-fasciculatus_F_contig14049:2929..30771622927896.4266376-CDS-E-fasciculatus_F_contig14049:2929..3077Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14049 2930..3077 -
1695995742.7430413-CDS-E-fasciculatus_F_contig14049:2929..30771695995742.7430413-CDS-E-fasciculatus_F_contig14049:2929..3077Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14049 2930..3077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14049.2967.1prot_E-fasciculatus_F_contig14049.2967.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14049 2186..3077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14049.2967.1

>prot_E-fasciculatus_F_contig14049.2967.1 ID=prot_E-fasciculatus_F_contig14049.2967.1|Name=mRNA_E-fasciculatus_F_contig14049.2967.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=107bp
EGYASWRESACTRPAPGTTTTSCTSAWRWRGTRTGGTCSRASASPSTTGA
SQGRTGRRCRGSTRSRWCRRCWRGPGATSASPWSSASATAWGRRSPACST
WTTSSGC
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mRNA from alignment at E-fasciculatus_F_contig14049:2184..3077-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14049.2967.1 ID=mRNA_E-fasciculatus_F_contig14049.2967.1|Name=mRNA_E-fasciculatus_F_contig14049.2967.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=894bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14049:2184..3077- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAAGGTTACGCATCCTGGCGGGAGTCGGCATGTACGCGGCCCGCGCCTGG GACAACCACGACCTCCTGCACCAGTGCATGGAGGTGGAGAGGGACTCGCA CTGGTGGCACGTGCTCACGAGCCTCGGCATCGCCTTCGACAACCGGGGGT GAGGAGGAGCAACAGAATACAGCAGTGGTGGCTGTACGGTCTGAGAGAGG GTTTGGATAAGCGAAGGACACGCTATTACATATTACATCCGGTTCTACTC TCTTGAACGCGATGTGTACTGTGTGTATGTAGTTCTCATGGTCGGGACAA GGCAAAAAGCAAAGCAATGTAAATTCGCTTGGAAACGACAGCAACAGTAC CTGCCAAAAGCACAGGAATGTAAAATCGCTTGGCACCGGCAGCAAGAACC TTCTATGAGTGCCAGAGGCCCGCGCTGCATTACAGCGCCGCCGCCCCCTC CCCCCCCCCGACTACTGCACCGCTAGAACAACTATGCTGTCAACCCGTCC ACGTCCTTCAACCGCTGTTACCATTGCTCCTCCGATTTTTGCTCGCTGCT TGCGAAACCTTGAGTGTTAAAAAGCGTGGCAATCACAGCAAGAACCCATA TCCACTATGCAAGAGACCCGCGCTGCACTACCCCCCCCGACCACAGCTGC CGACCCATCCACGACCTTCCTTCCTACTGCCATTGCCGTTGCGCCCTTGC CTCCATGCTGGCGAAACAGCTTCTCAAGGACGGACAGGTCGCAGGTGCCG GGGGAGTACCAGAAGTCGCTGGTGCCGGCGTTGCTGGAGAGGTCCGGGTG CGACCTCGGCCTCGCCCTGGAGTTCTGCGAGCGCTACGGCGTGGGGGAGG CGTTCCCCTGCTTGCTCTACGTGGACAACCAGCTCGGGCTGCCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14049:2184..3077-

>mRNA_E-fasciculatus_F_contig14049.2967.1 ID=mRNA_E-fasciculatus_F_contig14049.2967.1|Name=mRNA_E-fasciculatus_F_contig14049.2967.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=642bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14049:2184..3077- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAAGGTTACGCATCCTGGCGGGAGTCGGCATGTACGCGGCCCGCGCCTGG
GACAACCACGACCTCCTGCACCAGTGCATGGAGGTGGAGAGGGACTCGCA
CTGGTGGCACGTGCTCACGAGCCTCGGCATCGCCTTCGACAACCGGGGGA
AGGTTACGCATCCTGGCGGGAGTCGGCATGTACGCGGCCCGCGCCTGGGA
CAACCACGACCTCCTGCACCAGTGCATGGAGGTGGAGAGGGACTCGCACT
GGTGGCACGTGCTCACGAGCCTCGGCATCGCCTTCGACAACCGGGGCTTC
TCAAGGACGGACAGGTCGCAGGTGCCGGGGGAGTACCAGAAGTCGCTGGT
GCCGGCGTTGCTGGAGAGGTCCGGGTGCGACCTCGGCCTCGCCCTGGAGT
TCTGCGAGCGCTACGGCGTGGGGGAGGCGTTCCCCTGCTTGCTCTACGTG
GACAACCAGCTCGGGCTGCCTTCTCAAGGACGGACAGGTCGCAGGTGCCG
GGGGAGTACCAGAAGTCGCTGGTGCCGGCGTTGCTGGAGAGGTCCGGGTG
CGACCTCGGCCTCGCCCTGGAGTTCTGCGAGCGCTACGGCGTGGGGGAGG
CGTTCCCCTGCTTGCTCTACGTGGACAACCAGCTCGGGCTGC
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