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Homology
BLAST of mRNA_E-fasciculatus_F_contig14045.2965.1 vs. uniprot
Match: A0A6H5KMB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMB6_9PHAE) HSP 1 Score: 512 bits (1318), Expect = 1.400e-174 Identity = 285/363 (78.51%), Postives = 299/363 (82.37%), Query Frame = 1
Query: 856 LVKATGGELTLSLLQPSRAAPSIGRPTQRRTPAGLRGRGTTTAGGSG-----------DMRRSLSLVAAWADWAESGYGPLQWMSHEQKVFIARLSLYWVSFRTPPHGFEEKNVPNANETPVQHDRHGTTKEAFLHFRPILSSVTRVVVKSHGDPRSAARGTGGSXXXXXXXXXXSLVAVGGASSRTVPRGGSKILGVEEASRTSRVYVRDEGGVLRVEVVEADGSN---AESAGLRLDQAFGKEAWRETGLGELLWLDCSCRQYLALRLAQQVAIVVDDGRDGRGGQHDQDFVLKTKPRLVIISDLPLPYWMGTVPIARLGSHADGVFVVITDAGRRLLIEARDFERGPLLAKSTVSLEDWT 1902
+VKATGGELTLSL QPSRAAPS G T+ PAG+RGRG A GSG MRRSL+LVAAWADWAE+GYGPLQWMSHEQKVFIARLSLYWVSFRTP GFEEKN PNANETPV+H R TTKEAFLHF PILSSVTR V KS G P S+ RGTG XXXXXXXXXX SSRT PRGGS+I G EE SRTSRV VRDEGGVLRVEVVEA+ N ++S LDQAFGKE+WRETGLGELLWLDCSCRQYLALRLAQQVAIVVDD RDGRGGQHDQD VLK KPRLVIISDLPLPYWMGTVPIARLGSHA+GVFV+ITDAGRRLLIEARDFE GPLLAKSTVSLEDWT
Sbjct: 1 MVKATGGELTLSLFQPSRAAPSTGGTTR---PAGVRGRGAAAANGSGVHSTAGDPGRAAMRRSLTLVAAWADWAEAGYGPLQWMSHEQKVFIARLSLYWVSFRTPARGFEEKNAPNANETPVRHRRRRTTKEAFLHFHPILSSVTRDVGKSSGAPGSSVRGTGXXXXXXXXXXXXXXXXX--TSSRTAPRGGSEIFGGEETSRTSRVLVRDEGGVLRVEVVEAERKNVGRSKSGVSMLDQAFGKESWRETGLGELLWLDCSCRQYLALRLAQQVAIVVDDDRDGRGGQHDQDNVLKIKPRLVIISDLPLPYWMGTVPIARLGSHAEGVFVMITDAGRRLLIEARDFEGGPLLAKSTVSLEDWT 358
BLAST of mRNA_E-fasciculatus_F_contig14045.2965.1 vs. uniprot
Match: D7FSK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK7_ECTSI) HSP 1 Score: 311 bits (798), Expect = 3.850e-98 Identity = 168/223 (75.34%), Postives = 178/223 (79.82%), Query Frame = 1
Query: 1000 MRRSLSLVAAWADWAESGYGPLQWMSHEQKVFIARLSLYWVSFRTPPHGFEEKNVPNANETPVQHDRHGTTKEAFLHFRPILSSVTRVVVKSHGDPRSAARGTGGSXXXXXXXXXXSLVAVGGASSRTVPRGGSKILGVEEASRTSRVYVRDEGGVLRVEVVEAD---GSNAESAGLRLDQAFGKEAWRETGLGELLWLDCSCRQYLALRLAQQVAIVVDDGR 1659
MRRSLSLVAAWADWAE+GYGPLQWMSHEQKVFIARLSLYWVSFR GFEEKN P ANETPVQH R TTKEAFLHFRPILSSVTRVV KS+GDP SA GTGGS +LV VGGASSRTVPR GS+I G E SRTSRV+VRDEGGVLRVEVVEA+ G +S LD+AFGKEAWRETGL ELLWLDCSCRQYLALRLAQQ++ GR
Sbjct: 1 MRRSLSLVAAWADWAEAGYGPLQWMSHEQKVFIARLSLYWVSFRR---GFEEKNAPTANETPVQHHRRRTTKEAFLHFRPILSSVTRVVGKSNGDPGSAVPGTGGSG---------ALVVVGGASSRTVPREGSEIFGGGETSRTSRVFVRDEGGVLRVEVVEAERKNGGRPKSGVSILDEAFGKEAWRETGLEELLWLDCSCRQYLALRLAQQLSSWPASGR 211
BLAST of mRNA_E-fasciculatus_F_contig14045.2965.1 vs. uniprot
Match: D7FSK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK6_ECTSI) HSP 1 Score: 194 bits (493), Expect = 1.950e-51 Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 1
Query: 1750 MGTVPIARLGSHADGVFVVITDAGRRLLIEARDFERGPLLAKSTVSLEDWTATTGIATLSPPTDHNAFKKILEEQLAALLGAGFRSRTSRLERKRAAREAQQRGGG 2067
MGTVPIARLGSHA+GVFVV+TD GRRLLIEARDFERGPLLAKSTVSLEDWTATTGIATLSPPTD+ AFKKILEEQLAALLGAGFRSRTSRLERKRAAREAQQ+GGG
Sbjct: 1 MGTVPIARLGSHAEGVFVVVTDGGRRLLIEARDFERGPLLAKSTVSLEDWTATTGIATLSPPTDNRAFKKILEEQLAALLGAGFRSRTSRLERKRAAREAQQQGGG 106
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-04_000340.1 |
| Exons | 4 |
| Model size | 1677 |
| Cds size | 1647 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14045.2965.1 >prot_E-fasciculatus_F_contig14045.2965.1 ID=prot_E-fasciculatus_F_contig14045.2965.1|Name=mRNA_E-fasciculatus_F_contig14045.2965.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=549bp
MPHSLRDNPRSSRGSSGPPAAADTAVAERRSNDLFDGDDGTPSPCKSGAP QGLCSCRVVLRSGVSLPLSIPEPVESVAADIDNNDDDEYDSSCRNNNTIE TPAARRQSSSSNSSNSSSKSRWLVLVKATGGELTLSLLQPSRAAPSIGRP TQRRTPAGLRGRGTTTAGGSGDMRRSLSLVAAWADWAESGYGPLQWMSHE QKVFIARLSLYWVSFRTPPHGFEEKNVPNANETPVQHDRHGTTKEAFLHF RPILSSVTRVVVKSHGDPRSAARGTGGSGAGGGGGGGGSLVAVGGASSRT VPRGGSKILGVEEASRTSRVYVRDEGGVLRVEVVEADGSNAESAGLRLDQ AFGKEAWRETGLGELLWLDCSCRQYLALRLAQQVAIVVDDGRDGRGGQHD QDFVLKTKPRLVIISDLPLPYWMGTVPIARLGSHADGVFVVITDAGRRLL IEARDFERGPLLAKSTVSLEDWTATTGIATLSPPTDHNAFKKILEEQLAA LLGAGFRSRTSRLERKRAAREAQQRGGGCGGGGPFWSCPRWKKEDSGR* back to topmRNA from alignment at E-fasciculatus_F_contig14045:131..3263+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig14045.2965.1 ID=mRNA_E-fasciculatus_F_contig14045.2965.1|Name=mRNA_E-fasciculatus_F_contig14045.2965.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3133bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14045:131..3263+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) CGAGGGCTAAAACCCGGAAGCTATTTCCCGGTACGAAATTCAACACGATT
TCTGATCGGTTTCATGTTTTACCGGCATTGTCGGTGTCTTCGCGGTTTGT
TCTTCTCCCCTGTTGGGGATCCCTACAGCGACCACATACTCGTGAGTGCA
CCATTCTTAATTGGGCACCTCTTCTGATGGCCAGGCACTTAACTTTATCA
CTGTTTGAGCTGAATTTTCCCTGGGGCCTCCCAGGTTCCCAGGTGGTGGC
GTCTACTGCGGTGCATCGGTACATTCCGCCAGACTGAACGTTCTCGCACG
CCCGTCTCCTGTATCCTGGGTCTTTTGCTTTACCTTGTCTTCCGAAACCG
CCAAAATGCATCTGTCAAAAACAATCAGACCATATCATCAAATCTTTTGA
AGCTTCGTAGGGGTTTTGGTAGCCGTCCCATTAGTCAGCTGTTTTCACGT
ATCATGTCGGTAATTGCTGTGCTGTCTCATCAGATGCCACATTCGCTACG
GGACAACCCCCGTTCGAGCCGAGGGTCATCGGGACCTCCTGCCGCGGCTG
ACACAGCCGTAGCCGAGCGACGATCGAACGACCTATTCGACGGCGACGAC
GGTACGCCATCGCCGTGCAAGTCCGGTGCCCCGCAGGGGCTTTGCTCTTG
CCGAGTCGTGCTCAGGTCCGGGGTGTCGCTGCCTCTGTCGATACCCGAAC
CCGTCGAGAGTGTTGCCGCCGACATCGACAACAACGACGACGACGAGTAC
GATAGTAGCTGCAGAAACAACAACACCATCGAGACTCCGGCTGCCAGAAG
ACAAAGCAGCAGTAGCAACAGCAGCAACAGCAGCAGCAAGAGCCGGTGGC
TAGTGCTGGTGAAGGCGACGGGGGGCGAGCTGACGCTGTCACTGCTCCAA
CCATCAAGAGCGGCGCCATCGATCGGCCGGCCGACACAACGGCGAACACC
AGCTGGCCTCAGAGGGAGGGGCACCACCACAGCCGGCGGAAGCGGCGATA
TGCGGCGGTCTCTGTCGCTAGTGGCGGCCTGGGCAGATTGGGCGGAATCC
GGGTACGGTCCGCTGCAGTGGATGTCTCACGAGCAGAAGGTGTTCATCGC
CAGGCTCTCTCTCTACTGGGTGTCGTTCAGGACACCGCCGCATGGCTTCG
AGGAGAAAAACGTCCCCAATGCCAACGAAACCCCCGTGCAACACGACCGT
CACGGTACAACCAAGGAGGCGTTTCTTCATTTCCGTCCCATCCTCTCAAG
CGTGACTCGGGTGGTGGTAAAATCGCACGGGGACCCTCGTTCGGCGGCGC
GTGGAACGGGTGGCAGTGGTGCCGGCGGCGGCGGCGGCGGCGGCGGTTCC
TTGGTCGCGGTTGGCGGTGCCAGCAGCAGGACAGTACCCAGGGGCGGGAG
CAAAATACTCGGCGTGGAGGAAGCTTCGAGAACGAGTCGAGTTTATGTTC
GAGATGAGGGCGGCGTGCTTAGGGTCGAAGTTGTAGAGGCGGACGGAAGC
AACGCCGAGAGCGCGGGGTTGAGACTGGACCAGGCGTTCGGGAAAGAAGC
CTGGCGAGAAACGGGCTTGGGGGAGCTGTTGTGGCTGGACTGCTCTTGCC
GGCAGTACCTGGCTCTTCGGCTTGCTCAGCAGGTACGATAAGAGTTTGTT
TTCATCCTCTATTCACATTCTGGCGATTATAACTTGCGTTGGCACACCGA
TCGTTGTACCCGAAATGTTGCTCCGTTCTTCGCGGCGTGACCCGTGCACG
GTGCTGATCTGCCTGGAAATGCAGAAACATTTCGTTCGCGCATCATCCAC
CGACCAATTGCAACCCCACATGAAAACAGTGGCCATCCTGGTCGGTAATA
GGCCGTCGACGGTAGTTATTCCAGAGAAAATCAACCCGTTCACAGTGGTA
GTGGCTCTCGCTGTAGCCTTTACCACCGGCGGCCGTGTAACGTCCAGGAG
CCCAGACAATCTCCGATTGGGCATTCGGGCGCCTCAGTCTTTTCAAACCG
TTTCCTCGATTGTAGATATGTAGCGGCCATTGGTGCTAACCCGTCCCCCC
GCCGCGCCCATACGAAGTCCTTAAGCACGGGTTGTGCATACAAACTACGG
GTGTACAGGGTCCATGCCGCAAGTGCCTTTATTATTTTGTCACCTCTCCC
CCCCCCCAAGGTGGCCATCGTTGTGGACGACGGCAGAGACGGGAGAGGAG
GGCAACACGACCAAGACTTCGTGCTCAAAACCAAACCTAGGCTCGTCATC
ATCTCGGACCTGCCGTTGCCGTACTGGATGGGCACCGTACCGATAGCCCG
GCTGGGGAGCCACGCCGACGGGGTGTTCGTAGTGATAACGGATGCAGGGC
GCAGGCTGCTGATCGAGGCCAGGGACTTCGAACGCGGCCCTTTGCTCGCC
AAATCAACGGTTTCGTTGGAGGACTGGACAGGTAAAAGAAGGCCAAGAAG
ATCGTTCGAAAACGATGAAAACGTTGGGGAACAGAGCTGTTATACCTTGG
ACAATCAGATGGGAAGGGGTGCTGTCGTTTTTGGCGGCGAGGAGGGAGGG
CCTTGGTTGTTGAGAAACTGAAGTCTATTATTTGGGGTTGTTGTCCTGTG
TCCACGGAAGGCGTCCGCGTTAAGTTGGGCCGGTGCAGATGGAATAAGGT
TTTTACTGTGAGGACAACAATAACAACAATAACAATAAGGTTTTTACTGT
GAGGACAACAATAACAACAATAACAACAACAACAACAACCACAACGATAC
TTCTTTGTTGGTCAGCTGTGCTTTTGTGAAGTGACCAAAATCGACCGCAT
ACATACGTGAAGTGACCTTAAGCGCCACTTTGGCTCTACGTGATTGCTTC
ACCATGGAACCTTGTGAACGCACCGTGCTCTCAAAACCGGTGTTCCCCAA
ACCCAGCGACCACGGGGATAGCTACCCTCAGTCCCCCCACGGACCATAAC
GCCTTCAAGAAAATTCTGGAAGAGCAGCTCGCGGCATTGCTTGGCGCGGG
GTTCCGCAGCCGCACGAGCCGATTGGAGAGGAAACGGGCGGCCCGTGAGG
CGCAACAGCGGGGGGGGGGGTGCGGTGGCGGGGGACCTTTTTGGAGTTGT
CCGAGATGGAAAAAGGAAGACTCGGGCAGGTAA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig14045:131..3263+ >mRNA_E-fasciculatus_F_contig14045.2965.1 ID=mRNA_E-fasciculatus_F_contig14045.2965.1|Name=mRNA_E-fasciculatus_F_contig14045.2965.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3294bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14045:131..3263+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGCCACATTCGCTACGGGACAACCCCCGTTCGAGCCGAGGGTCATCGGG ACCTCCTGCCGCGGCTGACACAGCCGTAGCCGAGCGACGATCGAACGACC TATTCGACGGCGACGACGGTACGCCATCGCCGTGCAAGTCCGGTGCCCCG CAGGGGCTTTGCTCTTGCCGAGTCGTGCTCAGGTCCGGGGTGTCGCTGCC TCTGTCGATACCCGAACCCGTCGAGAGTGTTGCCGCCGACATCGACAACA ACGACGACGACGAGTACGATAGTAGCTGCAGAAACAACAACACCATCGAG ACTCCGGCTGCCAGAAGACAAAGCAGCAGTAGCAACAGCAGCAACAGCAG CAGCAAGAGCCGGTGGCTAGTGCTGGTGAAGGCGACGGGGGGCGAGCTGA CGCTGTCACTGCTCCAACCATCAAGAGCGGCGCCATCGATCGGCCGGCCG ACACAACGGCGAACACCAGCTGGCCTCAGAGGGAGGGGCACCACCACAGC CGGCGGAAGCGGCGATATGCGGCGGTCTCTGTCGCTAGTGGCGGCCTGGG CAGATTGGGCGGAATCCGGGTACGGTCCGCTGCAGTGGATGTCTCACGAG CAGAAGGTGTTCATCGCCAGGCTCTCTCTCTACTGGGTGTCGTTCAGGAC ACCGCCGCATGGCTTCGAGGAGAAAAACGTCCCCAATGCCAACGAAACCC CCGTGCAACACGACCGTCACGGTACAACCAAGGAGGCGTTTCTTCATTTC CGTCCCATCCTCTCAAGCGTGACTCGGGTGGTGGTAAAATCGCACGGGGA CCCTCGTTCGGCGGCGCGTGGAACGGGTGGCAGTGGTGCCGGCGGCGGCG GCGGCGGCGGCGGTTCCTTGGTCGCGGTTGGCGGTGCCAGCAGCAGGACA GTACCCAGGGGCGGGAGCAAAATACTCGGCGTGGAGGAAGCTTCGAGAAC GAGTCGAGTTTATGTTCGAGATGAGGGCGGCGTGCTTAGGGTCGAAGTTG TAGAGGCGGACGGAAGCAACGCCGAGAGCGCGGGGTTGAGACTGGACCAG GCGTTCGGGAAAGAAGCCTGGCGAGAAACGGGCTTGGGGGAGCTGTTGTG GCTGGACTGCTCTTGCCGGCAGTACCTGGCTCTTCGGCTTGCTCAGCAGA TGCCACATTCGCTACGGGACAACCCCCGTTCGAGCCGAGGGTCATCGGGA CCTCCTGCCGCGGCTGACACAGCCGTAGCCGAGCGACGATCGAACGACCT ATTCGACGGCGACGACGGTACGCCATCGCCGTGCAAGTCCGGTGCCCCGC AGGGGCTTTGCTCTTGCCGAGTCGTGCTCAGGTCCGGGGTGTCGCTGCCT CTGTCGATACCCGAACCCGTCGAGAGTGTTGCCGCCGACATCGACAACAA CGACGACGACGAGTACGATAGTAGCTGCAGAAACAACAACACCATCGAGA CTCCGGCTGCCAGAAGACAAAGCAGCAGTAGCAACAGCAGCAACAGCAGC AGCAAGAGCCGGTGGCTAGTGCTGGTGAAGGCGACGGGGGGCGAGCTGAC GCTGTCACTGCTCCAACCATCAAGAGCGGCGCCATCGATCGGCCGGCCGA CACAACGGCGAACACCAGCTGGCCTCAGAGGGAGGGGCACCACCACAGCC GGCGGAAGCGGCGATATGCGGCGGTCTCTGTCGCTAGTGGCGGCCTGGGC AGATTGGGCGGAATCCGGGTACGGTCCGCTGCAGTGGATGTCTCACGAGC AGAAGGTGTTCATCGCCAGGCTCTCTCTCTACTGGGTGTCGTTCAGGACA CCGCCGCATGGCTTCGAGGAGAAAAACGTCCCCAATGCCAACGAAACCCC CGTGCAACACGACCGTCACGGTACAACCAAGGAGGCGTTTCTTCATTTCC GTCCCATCCTCTCAAGCGTGACTCGGGTGGTGGTAAAATCGCACGGGGAC CCTCGTTCGGCGGCGCGTGGAACGGGTGGCAGTGGTGCCGGCGGCGGCGG CGGCGGCGGCGGTTCCTTGGTCGCGGTTGGCGGTGCCAGCAGCAGGACAG TACCCAGGGGCGGGAGCAAAATACTCGGCGTGGAGGAAGCTTCGAGAACG AGTCGAGTTTATGTTCGAGATGAGGGCGGCGTGCTTAGGGTCGAAGTTGT AGAGGCGGACGGAAGCAACGCCGAGAGCGCGGGGTTGAGACTGGACCAGG CGTTCGGGAAAGAAGCCTGGCGAGAAACGGGCTTGGGGGAGCTGTTGTGG CTGGACTGCTCTTGCCGGCAGTACCTGGCTCTTCGGCTTGCTCAGCAGGT GGCCATCGTTGTGGACGACGGCAGAGACGGGAGAGGAGGGCAACACGACC AAGACTTCGTGCTCAAAACCAAACCTAGGCTCGTCATCATCTCGGACCTG CCGTTGCCGTACTGGATGGGCACCGTACCGATAGCCCGGCTGGGGAGCCA CGCCGACGGGGTGTTCGTAGTGATAACGGATGCAGGGCGCAGGCTGCTGA TCGAGGCCAGGGACTTCGAACGCGGCCCTTTGCTCGCCAAATCAACGGTT TCGTTGGAGGACTGGACAGGTGGCCATCGTTGTGGACGACGGCAGAGACG GGAGAGGAGGGCAACACGACCAAGACTTCGTGCTCAAAACCAAACCTAGG CTCGTCATCATCTCGGACCTGCCGTTGCCGTACTGGATGGGCACCGTACC GATAGCCCGGCTGGGGAGCCACGCCGACGGGGTGTTCGTAGTGATAACGG ATGCAGGGCGCAGGCTGCTGATCGAGGCCAGGGACTTCGAACGCGGCCCT TTGCTCGCCAAATCAACGGTTTCGTTGGAGGACTGGACAGCGACCACGGG GATAGCTACCCTCAGTCCCCCCACGGACCATAACGCCTTCAAGAAAATTC TGGAAGAGCAGCTCGCGGCATTGCTTGGCGCGGGGTTCCGCAGCCGCACG AGCCGATTGGAGAGGAAACGGGCGGCCCGTGAGGCGCAACAGCGGGGGGG GGGGTGCGGTGGCGGGGGACCTTTTTGGAGTTGTCCGAGATGGAAAAAGG AAGACTCGGGCAGGTAACGACCACGGGGATAGCTACCCTCAGTCCCCCCA CGGACCATAACGCCTTCAAGAAAATTCTGGAAGAGCAGCTCGCGGCATTG CTTGGCGCGGGGTTCCGCAGCCGCACGAGCCGATTGGAGAGGAAACGGGC GGCCCGTGAGGCGCAACAGCGGGGGGGGGGGTGCGGTGGCGGGGGACCTT TTTGGAGTTGTCCGAGATGGAAAAAGGAAGACTCGGGCAGGTAA back to top
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