mRNA_E-fasciculatus_F_contig14040.2963.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14040.2963.1
Unique NamemRNA_E-fasciculatus_F_contig14040.2963.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14040.2963.1 vs. uniprot
Match: A0A6H5JH78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH78_9PHAE)

HSP 1 Score: 272 bits (695), Expect = 6.980e-85
Identity = 146/163 (89.57%), Postives = 150/163 (92.02%), Query Frame = 1 
Query:  298 SAPKWVRVGEKVCFSTIVAAVLIPSSHDLTLATKRELWWQPTDYAEFRVNYATHMHNPSIELEEQEREETMGPAPVVPTAANADTPASTATVQGVLVVAASPAPAPLAARPVNPLEASSAGGSGRRHGXXXXXXXXHKVGIGAGGGAAVPSQERVSKSYRQER 786
            SAPKWVRVGEKVCFSTIVAAVLIPSSHDLT+ATKRELWWQPTDYAEFRVNYATHMHNPSIELEEQER+ETMGPAPVVPT ANADTPASTATV+GVLVVAASPAPAPLAARPVNPLEA+ AG SGRRHG        HKVGI AGGGAA PSQERVSKSYRQER
Sbjct:  150 SAPKWVRVGEKVCFSTIVAAVLIPSSHDLTVATKRELWWQPTDYAEFRVNYATHMHNPSIELEEQERQETMGPAPVVPTTANADTPASTATVEGVLVVAASPAPAPLAARPVNPLEAT-AGASGRRHGNGGGGN--HKVGIDAGGGAAAPSQERVSKSYRQER 309
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BLAST of mRNA_E-fasciculatus_F_contig14040.2963.1 vs. uniprot
Match: D7G8G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G4_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 3.070e-39
Identity = 104/163 (63.80%), Postives = 106/163 (65.03%), Query Frame = 1 
Query:  298 SAPKWVRVGEKVCFSTIVAAVLIPSSHDLTLATKRELWWQPTDYAEFRVNYATHMHNPSIELEEQEREETMGPAPVVPTAANADTPASTATVQGVLVVAASPAPAPLAARPVNPLEASSAGGSGRRHGXXXXXXXXHKVGIGAGGGAAVPSQERVSKSYRQER 786
            SAPKWVRVGEKVCFSTIVAAVLIPSSHDLT+ATKRELWWQPTDYAEFRVNYATHMHNPSIELEE                                          LAARPVNPLEA+ AG SGRRH XXXXXXXX          AA PSQERVSK YRQER
Sbjct:  153 SAPKWVRVGEKVCFSTIVAAVLIPSSHDLTVATKRELWWQPTDYAEFRVNYATHMHNPSIELEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAARPVNPLEAT-AGASGRRHXXXXXXXXXXXXXXXXXXXAA-PSQERVSKPYRQER 313
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BLAST of mRNA_E-fasciculatus_F_contig14040.2963.1 vs. uniprot
Match: D8LTF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTF9_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.570e-10
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:  298 SAPKWVRVGEKVCFSTIVAAVLIPSSHDLTLATKRELWWQPTDYAEFRVNYATHMHNP 471
            +A   VRVG +V F+T+VAA+LIPS+ DL  A ++ELWWQ TDY +FR+N+   M +P
Sbjct:  121 AAAACVRVGSRVSFNTVVAAILIPSAKDLHAAARQELWWQETDYRDFRINFIQFMRSP 178
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BLAST of mRNA_E-fasciculatus_F_contig14040.2963.1 vs. uniprot
Match: A0A6H5JK69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK69_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.110e-10
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:  298 SAPKWVRVGEKVCFSTIVAAVLIPSSHDLTLATKRELWWQPTDYAEFRVNYATHMHNP 471
            +A   VRVG +V F+T+VAA+LIPS+ DL  A ++ELWWQ TDY +FR+N+   M  P
Sbjct:  117 AAAACVRVGSRVSFNTVVAAILIPSAKDLHAAARQELWWQETDYRDFRINFIQFMRTP 174
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14040.2963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JH78_9PHAE6.980e-8589.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8G4_ECTSI3.070e-3963.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LTF9_ECTSI1.570e-1053.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK69_9PHAE2.110e-1053.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14040contigE-fasciculatus_F_contig14040:821..3116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size786
Cds size786
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927896.0034485-CDS-E-fasciculatus_F_contig14040:820..12301622927896.0034485-CDS-E-fasciculatus_F_contig14040:820..1230Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14040 821..1230 +
1695995742.6042202-CDS-E-fasciculatus_F_contig14040:820..12301695995742.6042202-CDS-E-fasciculatus_F_contig14040:820..1230Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14040 821..1230 +
1622927896.024717-CDS-E-fasciculatus_F_contig14040:2740..31161622927896.024717-CDS-E-fasciculatus_F_contig14040:2740..3116Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14040 2741..3116 +
1695995742.6134005-CDS-E-fasciculatus_F_contig14040:2740..31161695995742.6134005-CDS-E-fasciculatus_F_contig14040:2740..3116Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14040 2741..3116 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14040.2963.1prot_E-fasciculatus_F_contig14040.2963.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14040 821..3116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14040.2963.1

>prot_E-fasciculatus_F_contig14040.2963.1 ID=prot_E-fasciculatus_F_contig14040.2963.1|Name=mRNA_E-fasciculatus_F_contig14040.2963.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=262bp
QQQQQQQQQKQPVATEPLQQALPSGNDDEKRSGVGGQQNTTNPAASIAAA
KGNNNNDDAEEEEDASEASPAAAAAKQPTRAEVAVEQASNNNPAAAAAAS
APKWVRVGEKVCFSTIVAAVLIPSSHDLTLATKRELWWQPTDYAEFRVNY
ATHMHNPSIELEEQEREETMGPAPVVPTAANADTPASTATVQGVLVVAAS
PAPAPLAARPVNPLEASSAGGSGRRHGSNGGGGGNHKVGIGAGGGAAVPS
QERVSKSYRQER
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mRNA from alignment at E-fasciculatus_F_contig14040:821..3116+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14040.2963.1 ID=mRNA_E-fasciculatus_F_contig14040.2963.1|Name=mRNA_E-fasciculatus_F_contig14040.2963.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2296bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14040:821..3116+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAACAACAACAACAACAACAACAGCAGAAGCAGCCGGTGGCGACTGAGCC
ACTGCAGCAGGCGCTGCCAAGCGGCAACGATGACGAGAAGAGGAGCGGAG
TAGGAGGACAACAAAACACCACCAACCCCGCTGCTTCCATCGCTGCCGCC
AAGGGCAACAACAACAACGACGACGCCGAGGAGGAGGAGGATGCGTCGGA
GGCATCCCCCGCTGCTGCCGCCGCGAAGCAACCCACGCGGGCAGAGGTAG
CGGTCGAGCAAGCAAGCAACAACAACCCGGCCGCCGCCGCCGCCGCCTCC
GCCCCCAAGTGGGTCCGCGTGGGCGAGAAGGTGTGCTTTTCGACCATCGT
GGCCGCCGTGCTCATCCCGTCCTCTCACGACCTCACCCTGGCTACTAAGC
GCGAGCTCTGGTGAGTCTGCTGGTGGTCGATGGCCTTCGAGGCTTGGGTG
CTATGTAGGCTACGTTCGTGTAGAGCGTGATGGTTCGTCCGCTTTACAGC
GGTACATAGGTGGCGTGTGGGTGCAGCAGAGCAGTATTCCGTGTTTTTTG
CTGCCTCAACCGAAAAATAATCCTTCTCCAACCCTTTCAGCCCTCCAGCA
GGCAGATGGATCTTTTGCTGGATTGCTTTCTATTTTGTGAGAATGCGCAT
TTATACAAACAATTACACAAAGGCAACAGCAGCAGCAGCGTCACCGGCGC
GGGTTGCTCTTCCCAGGCCAGATTTTATTTAGTAGTTGTATACCACACAA
GCAGAAGTGACGTCCCGACGTAGAACAGCATACGTTAATGCAGTTATGTG
CGCACACCACCATCCCGCCTCCTGCCCGGAGATGCGCAAGTCAGAGAATG
TCCCTCGTTGTTGATGTTCATGGCTGTCGGCCGGCTTTTTACCCCATAAC
CCCAGGCTCGAAATGAAGTTGAGTATGTATACATCCATGTGATGCAATCG
CAGCGGCGGCGTCCGATAAAGGCGAGAATGAGGCGATGGTCGCCATGCTT
CTTAGATCACTGGGTTGGGAGGTCACCCTCGCGCTTAAAACAATTCCCTC
ACCTCTGCACAATGCACAGCAGCAGCACCGGCAGGCACACGATCTACGTA
CATGCACAACTCCCGTCTCTCCATCACCCAACCATGAATCGCCCGGCCTG
ATTTTTTGCCCTGTTGTCTTCTCCTACTTCATACAATAACTCGCTGGGGT
AAGAACGAAGGGCGAGGTTACCCTACCTTTCCATCACCGCCTTGGTTGAT
GTTGGATGTTTATTTAGTTGATGCTCGCTCGGTAGGAAGGCGTCTGGCTG
GCACGGTTGGGTGGCCGTGCGTGGTGTGTGCGTTCTAAACAGTCCGAAAT
CACTTCATTAGCAAAAACGCGCCGTGTGGCACCCTCGTGTCAATATTTCG
TACATATCCCATCTAGAAAGCACTCGCTCGCGATTAGTCTCCCCCCAGTG
AGAGGCAGCCCAAGGCGAAACGCGGCAATGACGTTAGGTGCTTCACATGT
TCTTTATTCACTATGCAATAGTTCACATGTCCCTACCGCACACAAATTGG
TAAATATAAATATTAAATATTTAGACCTGCGTACACTCCACACAGAACAA
AAAATCGGTAAACAACAGCATTACATCTTCATACAAGTGCTTATTTGTCT
ACACGGATAGAGAGGGTCGTTTCCCAGTTGTGAAATGTCTGAAACAAGCT
TCGCGCGCTACGCCCGATGGTCTGGTGGCCTGTGGTTGCAGGCATGCATA
CGTCCAAGCAAGTCTTCCGCCTTCTTTTTTCTTTCCGTTTCCCGTCAGCC
GATGAGATGACCTTGGTGATGCACCGTTTTCCTGGCAACTTGTCCTAACG
CTGCTTGCTCCCTTCTTCCTTCCTCCCGATGATGATTACATTGCATATGA
TATGATGATGGTCCTGACAGGTGGCAGCCCACGGACTACGCCGAATTCCG
CGTGAACTACGCCACGCACATGCACAACCCGTCCATCGAGCTCGAGGAGC
AAGAGAGGGAGGAGACCATGGGCCCCGCGCCGGTGGTCCCCACCGCCGCC
AACGCCGACACGCCCGCCTCTACCGCCACCGTGCAAGGAGTTCTCGTTGT
CGCTGCTTCCCCCGCCCCTGCTCCTCTAGCGGCCCGCCCGGTCAACCCTC
TGGAGGCGTCGAGTGCTGGCGGGAGTGGACGGCGACACGGCAGCAACGGC
GGCGGTGGCGGCAACCATAAGGTCGGCATCGGCGCCGGCGGCGGAGCGGC
CGTCCCCAGCCAGGAGCGCGTGTCGAAGTCGTACCGTCAGGAGAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14040:821..3116+

>mRNA_E-fasciculatus_F_contig14040.2963.1 ID=mRNA_E-fasciculatus_F_contig14040.2963.1|Name=mRNA_E-fasciculatus_F_contig14040.2963.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1572bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14040:821..3116+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAACAACAACAACAACAACAACAGCAGAAGCAGCCGGTGGCGACTGAGCC
ACTGCAGCAGGCGCTGCCAAGCGGCAACGATGACGAGAAGAGGAGCGGAG
TAGGAGGACAACAAAACACCACCAACCCCGCTGCTTCCATCGCTGCCGCC
AAGGGCAACAACAACAACGACGACGCCGAGGAGGAGGAGGATGCGTCGGA
GGCATCCCCCGCTGCTGCCGCCGCGAAGCAACCCACGCGGGCAGAGGTAG
CGGTCGAGCAAGCAAGCAACAACAACCCGGCCGCCGCCGCCGCCGCCTCC
GCCCCCAAGTGGGTCCGCGTGGGCGAGAAGGTGTGCTTTTCGACCATCGT
GGCCGCCGTGCTCATCCCGTCCTCTCACGACCTCACCCTGGCTACTAAGC
GCGAGCTCTGCAACAACAACAACAACAACAACAGCAGAAGCAGCCGGTGG
CGACTGAGCCACTGCAGCAGGCGCTGCCAAGCGGCAACGATGACGAGAAG
AGGAGCGGAGTAGGAGGACAACAAAACACCACCAACCCCGCTGCTTCCAT
CGCTGCCGCCAAGGGCAACAACAACAACGACGACGCCGAGGAGGAGGAGG
ATGCGTCGGAGGCATCCCCCGCTGCTGCCGCCGCGAAGCAACCCACGCGG
GCAGAGGTAGCGGTCGAGCAAGCAAGCAACAACAACCCGGCCGCCGCCGC
CGCCGCCTCCGCCCCCAAGTGGGTCCGCGTGGGCGAGAAGGTGTGCTTTT
CGACCATCGTGGCCGCCGTGCTCATCCCGTCCTCTCACGACCTCACCCTG
GCTACTAAGCGCGAGCTCTGGTGGCAGCCCACGGACTACGCCGAATTCCG
CGTGAACTACGCCACGCACATGCACAACCCGTCCATCGAGCTCGAGGAGC
AAGAGAGGGAGGAGACCATGGGCCCCGCGCCGGTGGTCCCCACCGCCGCC
AACGCCGACACGCCCGCCTCTACCGCCACCGTGCAAGGAGTTCTCGTTGT
CGCTGCTTCCCCCGCCCCTGCTCCTCTAGCGGCCCGCCCGGTCAACCCTC
TGGAGGCGTCGAGTGCTGGCGGGAGTGGACGGCGACACGGCAGCAACGGC
GGCGGTGGCGGCAACCATAAGGTCGGCATCGGCGCCGGCGGCGGAGCGGC
CGTCCCCAGCCAGGAGCGCGTGTCGAAGTCGTACCGTCAGGAGAGGGTGG
CAGCCCACGGACTACGCCGAATTCCGCGTGAACTACGCCACGCACATGCA
CAACCCGTCCATCGAGCTCGAGGAGCAAGAGAGGGAGGAGACCATGGGCC
CCGCGCCGGTGGTCCCCACCGCCGCCAACGCCGACACGCCCGCCTCTACC
GCCACCGTGCAAGGAGTTCTCGTTGTCGCTGCTTCCCCCGCCCCTGCTCC
TCTAGCGGCCCGCCCGGTCAACCCTCTGGAGGCGTCGAGTGCTGGCGGGA
GTGGACGGCGACACGGCAGCAACGGCGGCGGTGGCGGCAACCATAAGGTC
GGCATCGGCGCCGGCGGCGGAGCGGCCGTCCCCAGCCAGGAGCGCGTGTC
GAAGTCGTACCGTCAGGAGAGG
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