mRNA_E-fasciculatus_F_contig1404.2961.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1404.2961.1 vs. uniprot
Match: D8LIG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG0_ECTSI) HSP 1 Score: 1558 bits (4034), Expect = 0.000e+0 Identity = 909/1019 (89.21%), Postives = 933/1019 (91.56%), Query Frame = 1
Query: 142 MAEGETRCEQCIQRDTNCVFSTKAKTGPKPKSAKSKAEGAARHKGKSSRSSARRVRGTTQMPSVLPRRGSASGHGSSXXXXXXXFRGFEAAGGSFASRAAAAPTAQPPVEAGTAAASRERLYLSVFIGTVGKLVPLVREEVLSVALRERQRLPQDMATAVGADLVACEQAQVVGAISLGALISGDQEAAHAYYLSLRYHLGDVNSLTGVGVVPSLALVALYWQHQGEDELKIEWVGHARRVLANVQIIPANLVLSIEYLDYAREAHPRPGVELMPWSHRALHSISCLLANMPAIVNPAMGRAAAIGSCEELNLCILGLRNEASVELTLLLCTSLRALLLAMLGQRDAATDVLDTIPSLVDVGSGGNPSVVRALPLSWDALLIASALSFLLGQGATYQRLRSAVELATDVPAEARWTFCLPEPGSDPQAYVVHECNSSSNICNIMCEIASRTNFGAQPFYSDEQQKGEXXXXRQLQQQPGLLHPSTPMMPSLVLTSPHRQVSLETAAAQLSGEHRYGYGPAGKTMRRMPSNLQGNFAAVGSGADVGDVGMMPFIDGGFGSRGAGVAEGGGGITTTVSEDMVLEGDCVDPVACKRRRMMTGEDGGDPFDPSAGSFSFPQEGGDGEGHGHMPLLPPTHPGSGGTVDAAGHYDSSKAFGHRSLGIRGAGPGKSLGGGTDGDEGFGGGSLGLTRDLHNMSLSRLSVPSFPDHGGAGGALADDLHLGRMPSEGIMDLSSSMGSFNLDMVGLDGGXXXXXVKSGKGLGSFTTGPITTDTDEDGEGGGVGGNSLGNITFPAAXXXXXXXXXX----KKRSFSSTTSRPLRLASFTTYSPSLCRTSSSSSMPRQPFSGXXXXXXXXXXXEGSIGQCGSDLGHDIVASAEDFMNEEGSEDICGNILSVDAILGDIGSNAVGKLSASKDGNAKSVGEGAATLDKPRIDAATAGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISTSLDQHKKSITPPSLADFYETGGTTTALPAQP 3186
MAEGETRCEQCIQRDTNCVFSTKAKTGPKPKSAK+KAEGA RHKGKSSRSSARRVRG +++PSVLPRRGSASGHGSSXXXXXX F GFEA G SFASRA AAPTAQPPVEAGTAAA RERLYLSVFIGTVGKLVPLVREEVLSVALRERQRLPQDMATAVGADLVACEQAQVVGAISLGALISGDQEAAHAYYLSLRYHLGDVN LTGVGVVPSLALVALYWQH+GEDELKIEWVGHARRVLANVQ IPANLVLSIEYLDYAREAHPRPGVELMP SHRALHSISCLLANMPAIVNPA+GRAAAIGSCEEL++CILGLRNE SVELTLLLCTSLRALLLAMLGQRDAATDVLDTIPSLVDVGSGGNPSVVRALPLSWDALLIASALSFLLGQGATYQRLRSAVELATDVPAEARWTFCLPEPGSDPQAYVVHECNSSSNICNIMCEIASRTNFGAQPFYSDEQQKGE Q QQPG LHPSTPMMP+LVLTSPHRQ+S ETAAAQLSG+HRYGYGPAGKT+RR+PS+LQGNFAAVG GDVGMMPFIDGGFG RGAG +G GI TTV+EDMVLEGDCVD A KRRRMM G+ GGDPFDPSAGSF F QEGGDGEGHGHMPLLPP H GSGGTVDA GHYDSSKAFG R+LGIRG GPGKSLGGGTDGDE F GGSLGLTRDLHNMSLSRLS+PSFPD GGAGGALADDL+LGR+PSEGIMDLSSSMGSFNLDMVGLDGG VKS KGLGSF TGPITTDTD GNSLGNITFPAAXXXXXXXXXX KKRSFSS TSRP RLASFTTYS SLCRTSSSSSMPRQ FSGXXXXXXXXXX EGSIGQCGSDLGHDIVASAEDFMNEEG EDICGNILSVDAILGDIGSNAVGKLS KD NAKSVGEGAA+LDKP I AA AGEG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DISTSLD+HKKSITP +LADFYETGGTT LPAQP
Sbjct: 1 MAEGETRCEQCIQRDTNCVFSTKAKTGPKPKSAKAKAEGATRHKGKSSRSSARRVRGASRVPSVLPRRGSASGHGSSXXXXXXSFPGFEAIGDSFASRAVAAPTAQPPVEAGTAAAGRERLYLSVFIGTVGKLVPLVREEVLSVALRERQRLPQDMATAVGADLVACEQAQVVGAISLGALISGDQEAAHAYYLSLRYHLGDVNGLTGVGVVPSLALVALYWQHRGEDELKIEWVGHARRVLANVQSIPANLVLSIEYLDYAREAHPRPGVELMPSSHRALHSISCLLANMPAIVNPAVGRAAAIGSCEELSICILGLRNETSVELTLLLCTSLRALLLAMLGQRDAATDVLDTIPSLVDVGSGGNPSVVRALPLSWDALLIASALSFLLGQGATYQRLRSAVELATDVPAEARWTFCLPEPGSDPQAYVVHECNSSSNICNIMCEIASRTNFGAQPFYSDEQQKGEEQEQEQQLQQPGRLHPSTPMMPALVLTSPHRQLSHETAAAQLSGDHRYGYGPAGKTVRRLPSDLQGNFAAVGIDGS-GDVGMMPFIDGGFGGRGAGATDGRAGIATTVAEDMVLEGDCVDSAAYKRRRMMPGQGGGDPFDPSAGSFCFAQEGGDGEGHGHMPLLPPRHSGSGGTVDALGHYDSSKAFGQRALGIRGTGPGKSLGGGTDGDEDFEGGSLGLTRDLHNMSLSRLSLPSFPDDGGAGGALADDLNLGRVPSEGIMDLSSSMGSFNLDMVGLDGGGGG--VKSVKGLGSFITGPITTDTDXXXXXXXXXGNSLGNITFPAAXXXXXXXXXXXXTGKKRSFSSATSRPRRLASFTTYSTSLCRTSSSSSMPRQRFSGXXXXXXXXXXEEGSIGQCGSDLGHDIVASAEDFMNEEGREDICGNILSVDAILGDIGSNAVGKLSTCKDSNAKSVGEGAASLDKPPIHAAIAGEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--DISTSLDEHKKSITPDTLADFYETGGTTPPLPAQP 1014
BLAST of mRNA_E-fasciculatus_F_contig1404.2961.1 vs. uniprot
Match: A0A6H5JAW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW1_9PHAE) HSP 1 Score: 1271 bits (3288), Expect = 0.000e+0 Identity = 783/998 (78.46%), Postives = 811/998 (81.26%), Query Frame = 1
Query: 211 AKTGPKPKSAKSKAEGAARHKGKSSRSSARRVRGTTQMPSVLPRRGSASGHGSSXXXXXXXFRGFEAAGGSFASRAAAAPTAQPPVEAGTAAASRERLYLSVFIGTVGKLVPLVREEVLSVALRERQRLPQDMATAVGADLVACEQAQVVGAISLGALISGDQEAAHAYYLSLRYHLGDVNSLTGVGVVPSLALVALYWQHQGEDELKIEWVGHARRVLANVQIIPANLVLSIEYLDYAREAHPRPGVELMPWSHRALHSISCLLANMPAIVNPAMGRAAAIGSCEELNLCILGLRNEASVELTLLLCTSLRALLLAMLGQRDAATDVLDTIPSLVDVGSGGNPSVVRALPLSWDALLIASALSFLLGQGATYQRLRSAVELATDVPAEARWTFCLPEPGSDPQAYVVHECNSSSNICNIMCEIASRTNFGAQPFYSDEQQKGEXXXXRQLQQQPGLLHPSTPMMPSLVLTSPHRQVSLETAAAQLSGEHRYGYGPAGKTMRRMPSNLQGNFAAVGSGADVGDVGMMPFIDGGFGSRGAGVAEGGGGITTTVSEDMVLEGDCVDPVACKRRRMMTGEDGGDPFDPSAGSFSFPQEGGDGEGHGHMPLLPPTHPGSGGTVDAAGHYDSSKAFGHRSLGIRGAGPGKSLGGGTDGDEGFGGGSLGLTRDLHNMSLSRLSVPSFPDHGGAGGALADDLHLGRMPSEGIMDLSSSMGSFNLDMVGLDGGXXXXXVKSGKGLGSFTTGPITTDTDEDGEGGGVGGNSLGNITFPAAXXXXXXXXXX------KKRSFSSTTSRPLRLASFTTYSPSLCRTSSSSSMPRQPFSGXXXXXXXXXXXEGSIGQCGSDLGHDIVASAEDFMNEEGSEDICGNILSVDAILGDIGSNAVGKLSASKDGNAKSVGEGAATLDKPRIDAATAGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISTSLDQHKKSITPPSLADFYETGGTTTALPAQP 3186
AKTGPKPKSAK+KAEGAARHK KSSRSSARRV G +Q+PSVLPRRGSASG+ XXXXXX FRGFEA G SFASRA AAPTAQPPVEAGTAAA ERLYLSVFIGTVGKLVPLVREEVLSVALRERQRLPQDMATAVGA+LVACEQAQVVGAISLGALISGDQEAAHAYYLSLRYHLGDVNSLTGVGVVPSLALVALYWQH+GEDELKIEWVGHARRVLANVQ SVELTLLLCTSLRALLLAMLGQRDAATDVLDTIPSLVDVGSGGNPSVVRALPLSWDALLIASALSFLLGQGATYQRLRSAVELATDVPAEARWTFCLPEPGSDPQAYVVHECNSSSNICNIMCEIASRTNFGAQPFYSDEQQKGE XX QQPGLLHPSTPMMP+LVL+S HRQ+S ETAAAQ SG+HRYG GPAG+T+RRMPS+LQGNFAAVG GDVG+MPFIDGGFG RGAG +G GI TTV+E++VLEGDCVD A KRRR M GE GDPFDPSAGSF F Q GGDGEGHGH LLPP HPGSGGTVDA GHYDSS+AFG R+ GIRG GPGKSLGGGTD D F G SLGLTRDLHNMSLSRLSVPSFPD GGAGGALADDLHLG +PSEGIMDLSSSMGSFNLDMVGLDGG V SGKGLGSF PITTD DEDG VGGNSLG+ITFPAA XXXXXX KKRSFSS TSRP RLASF TYS SLCRTSSSSSMPRQ F GXXXXXXXXXX EGSIGQCGSDLGHDIVASAEDFMNEEG EDICGNILSVDAILGDIGSNAVGKLS KD NAKSVGEG A+LD+PR A+TAGEG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +I TSLD+ KKSITP +LADFYETG T LPAQP
Sbjct: 32 AKTGPKPKSAKAKAEGAARHKSKSSRSSARRVHGASQVPSVLPRRGSASGNXXXXXXXXXSFRGFEAIGDSFASRAVAAPTAQPPVEAGTAAADHERLYLSVFIGTVGKLVPLVREEVLSVALRERQRLPQDMATAVGANLVACEQAQVVGAISLGALISGDQEAAHAYYLSLRYHLGDVNSLTGVGVVPSLALVALYWQHRGEDELKIEWVGHARRVLANVQ---------------------------------------------------------------------------TSVELTLLLCTSLRALLLAMLGQRDAATDVLDTIPSLVDVGSGGNPSVVRALPLSWDALLIASALSFLLGQGATYQRLRSAVELATDVPAEARWTFCLPEPGSDPQAYVVHECNSSSNICNIMCEIASRTNFGAQPFYSDEQQKGEEQXXXXQLQQPGLLHPSTPMMPALVLSSSHRQLSHETAAAQPSGDHRYGCGPAGETVRRMPSDLQGNFAAVGIDGS-GDVGIMPFIDGGFGGRGAGATDGRAGIATTVAENVVLEGDCVDSAAYKRRRTMPGESSGDPFDPSAGSFCFAQHGGDGEGHGHKSLLPPRHPGSGGTVDALGHYDSSQAFGQRAFGIRGTGPGKSLGGGTDRDGDFEGDSLGLTRDLHNMSLSRLSVPSFPDDGGAGGALADDLHLGSVPSEGIMDLSSSMGSFNLDMVGLDGGGGA--VMSGKGLGSFIIRPITTDIDEDGXXXXVGGNSLGSITFPAAAVGGXXXXXXXXXXTGKKRSFSSATSRPPRLASFMTYSASLCRTSSSSSMPRQRF-GXXXXXXXXXXEEGSIGQCGSDLGHDIVASAEDFMNEEGREDICGNILSVDAILGDIGSNAVGKLSNCKDSNAKSVGEGVASLDRPRRHASTAGEGGWEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAG--NIHTSLDEQKKSITPETLADFYETGDTPP-LPAQP 947
BLAST of mRNA_E-fasciculatus_F_contig1404.2961.1 vs. uniprot
Match: A0A835ZC43_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC43_9STRA) HSP 1 Score: 228 bits (580), Expect = 5.750e-58 Identity = 178/521 (34.17%), Postives = 247/521 (47.41%), Query Frame = 1
Query: 97 RTACNFCHDKRVKCVMAEGET---RCEQCIQRDTNCVFSTKAKTGPKPKSAKSKAEGAARHKGKSSRSSARRVRGTTQMPSVLPRRGSASGHGSSXXXXXXXFRGFEAAGGSFASR-------------------------------------------AAAAPTAQPPVEAGTAAASRERLYLSVFIGTVGKLVPLVREEVLSVALRERQRLPQDMATAVGADLVACEQAQVVGAISLGALISGDQEAAHAYYLSLRYHLGDVNSLTGVGVVPSLALVALYWQHQGEDELKIEWVGHARRVLANVQIIPA-NLVLSIEYLDYAREAHPRPGVELMPWSHRALHSISCLLANMPAIVNPAMGRAAAIGSCEELNLCILGLRNEASVELTLLLCTSLRALLLAMLGQRDAATDVLDTIPSLVDVGSGGNPSVVRALPLSWDALLIASALSFLLGQGATYQRLRSAVELATDVPAEARWTFCLPEPGSDPQAYVVHECNSSSNICNIMCEIASRTNFGAQPFY 1518
R+AC++CH KR+KC + E RC+QC++R+ C FS K KTGPKPK A+S E S++ R P XXXXXXX A P A P E + ER++L ++ TV L+P E L+ AL R R P A+ + QAQ+ GA+++GALI GD+ A AY+ + R HL + S L ++A YWQ++G+D+ K ++ HAR L +P L L +E+LDY P +P RALH++SC+LA++ ++ P+ G A A+ C +L C L A L LLC +L + LL MLG+R A L +P ++D P RALPLSWDA LIA+ LSFLL ATY RL +AVE A + A +WT LP PG+ P Y+ H C S+SNIC+++C++ T G FY
Sbjct: 33 RSACDWCHTKRIKCKRDDSEPLGGRCQQCVRRNIECKFSYKEKTGPKPKIARSGKEPGGXXXXVRQSSASPGARSAQLRPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGALPMA--PSEQ----VALERVFLRTYLSTVSTLLPFCVELPLADALAARARAPGGPASVASS----VAQAQLAGALAVGALIRGDR-VAEAYHAAARAHLKALFSAPSPEAASVLCMLAFYWQYRGDDDKKGVYLRHARLGLDRAGAVPPLELQLCMEHLDYETAGRPVRDARALPPRLRALHTVSCVLADIQDLMEPSAGPAPALAYCAQLADCSAALGTGAG--LPALLCAALHSFLLVMLGRRADAAAALSRVPDVLDAC----PDAPRALPLSWDAALIAATLSFLLRLEATYARLHAAVERAQNATAATQWTCRLPAPGAPPAQYLGHACRSTSNICSVICKVGHHTQCGMHSFY 536
BLAST of mRNA_E-fasciculatus_F_contig1404.2961.1 vs. uniprot
Match: A0A835Z4W4_9STRA (RNB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W4_9STRA) HSP 1 Score: 152 bits (383), Expect = 1.830e-33 Identity = 118/404 (29.21%), Postives = 189/404 (46.78%), Query Frame = 1
Query: 451 TAQPPVEAGTAAASRERLYLSVFIGTVGKLVPLVREEVLSVALRERQRLPQDMATAVGADLV-------------ACEQAQVVGAISLGALISGDQEAAHAYYLSLRYHLGDVNS--------------------LTGVGVVPSLALVALYWQHQGEDELK-IEWVGHARRVLANVQIIPANL--VLSIEYLDYAREAHP-----RPGVELMPWSHRALHSISCLLANMPAIVNPAMGRAAAIGSCEELNLCILGLRNEASVELTLLLCTSLRALLLAMLGQRDAATDVLDTIPSLVDVGSGGNPSVVRALPLSWDALLIASALSFLLGQGATYQRLRSAVELATDVPAEARWTFCLPEPGSDPQAYVVHECNSSS----NICNIMCEIASRTNFGAQPFYSDE 1527
T+ PV A A S E +L ++GTV +L+PL + L + R+ L + ++ G V ++A+++ A+++GALI E+A AY + + L +V + L + P L ++A YWQ+QG +K + V + P +L L +E+LDYAR A P +P AL +S LL +MP ++N A G A +L C + + +E EL L+C +L+ALLLA+LG+ A + +P +D NP ++R++PL+WD ++A+ L+F+LG A Y L AVE V A +W LP +V H C S+ N+C+ + E+A RT +Y+ E
Sbjct: 925 TSVVPVSA--AGISHEWGFLKAYLGTVARLLPLCDPKELQARMAARKALFLEFSSTTGPGPVPGIAXXXXXXXSGGVQEAELMAALAVGALICNQAESAKAYQAAAQAQLSEVMAAXXXXXXXXXXXXXXXXXVALPRPALAPVLCMLAFYWQYQGNSAMKDVCLVQALQTAYGPGAAAPPSLHVQLCMEHLDYARAAEPWIQSAHAAARDLPARLWALGIVSALLRDMPTLMNSARGGLVAQMYARQLGECAVAVEHEEGNELPALVCWALQALLLALLGRHADAVAAIAHVPPALDA----NPLIIRSMPLAWDMAILAATLAFVLGSAADYAALLRAVEWGLGVTAATQWGCRLPSMDCPLGLWVSHTCASARQSCMNVCDTVSEVAVRTKCARVRYYTSE 1322 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1404.2961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1404.2961.1 >prot_E-fasciculatus_F_contig1404.2961.1 ID=prot_E-fasciculatus_F_contig1404.2961.1|Name=mRNA_E-fasciculatus_F_contig1404.2961.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=1063bp MANPSKTQAFPTRGRSRGETSKASPSVRARSPRTACNFCHDKRVKCVMAEback to top mRNA from alignment at E-fasciculatus_F_contig1404:5391..11213- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1404.2961.1 ID=mRNA_E-fasciculatus_F_contig1404.2961.1|Name=mRNA_E-fasciculatus_F_contig1404.2961.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5823bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1404:5391..11213- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1404:5391..11213- >mRNA_E-fasciculatus_F_contig1404.2961.1 ID=mRNA_E-fasciculatus_F_contig1404.2961.1|Name=mRNA_E-fasciculatus_F_contig1404.2961.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=6378bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1404:5391..11213- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |