mRNA_E-fasciculatus_F_contig14032.2959.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14032.2959.1
Unique NamemRNA_E-fasciculatus_F_contig14032.2959.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14032.2959.1 vs. uniprot
Match: A0A6H5KRF6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF6_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 3.970e-57
Identity = 90/133 (67.67%), Postives = 103/133 (77.44%), Query Frame = 3 
Query:    3 GRADGGYVGRKVMTVAQMDKDDENDEFERVYEIHVAPKTANQMRDCPFFVWFTSREEKDRQRQAFGLRCLNCGSDTHFVRDCDKGYMNVSKILNPNLAKGTAKEVKDRWERWLSRFQHWHASRMENRRRGYNN 401
            GR+DGGY GR VMTV  MD +DE  EF+RVY+IH AP+T +Q  DCPFF WFTS EEKDR R+AFGLRCLNCGS+ HFVRDCDKGY+N S +LN NLA G+  EVK RW+RWL R + W A RME RRR  NN
Sbjct:  223 GRSDGGYGGR-VMTVEDMDYEDECAEFQRVYDIHAAPRTNSQATDCPFFAWFTSVEEKDRHRRAFGLRCLNCGSEGHFVRDCDKGYINASNMLNKNLATGSKAEVKARWDRWLHRLRQWQAHRMEERRRVRNN 354
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BLAST of mRNA_E-fasciculatus_F_contig14032.2959.1 vs. uniprot
Match: A0A6H5KBL4_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL4_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 1.770e-54
Identity = 89/133 (66.92%), Postives = 103/133 (77.44%), Query Frame = 3 
Query:    3 GRADGGYVGRKVMTVAQMDKDDENDEFERVYEIHVAPKTANQMRDCPFFVWFTSREEKDRQRQAFGLRCLNCGSDTHFVRDCDKGYMNVSKILNPNLAKGTAKEVKDRWERWLSRFQHWHASRMENRRRGYNN 401
            GR+DGGY GR VMTV  MD +DE  EF+RVY+IH AP+T +Q  DCPFF WFTS EEKDR RQAFGLRCLNCGS+ HFVRDCDKGY+N S +LN NLA  +  EVK RW+RWL R + W ++RME RRR  NN
Sbjct:  422 GRSDGGYGGR-VMTVEDMDYEDECAEFKRVYDIHAAPRTNSQATDCPFFAWFTSVEEKDRHRQAFGLRCLNCGSEGHFVRDCDKGYINTSNMLNKNLATESKAEVKARWDRWLHRLRQWQSNRMEERRRERNN 553
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BLAST of mRNA_E-fasciculatus_F_contig14032.2959.1 vs. uniprot
Match: A0A6H5K0Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q4_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 7.410e-51
Identity = 77/119 (64.71%), Postives = 94/119 (78.99%), Query Frame = 3 
Query:    3 GRADGGYVGRKVMTVAQMDKDDENDEFERVYEIHVAPKTANQMRDCPFFVWFTSREEKDRQRQAFGLRCLNCGSDTHFVRDCDKGYMNVSKILNPNLAKGTAKEVKDRWERWLSRFQHW 359
            GR+DGGY GR+VMTV  MD +D+ +EF+RVY IH +P+T +Q+ DCPFF WFTS EEKDR R+AFG RCLNCGS+  FVRDC KGY+N S +LN NLA G+  EVK RW+RWL+R Q W
Sbjct:  168 GRSDGGYGGRRVMTVEDMDYEDKCEEFKRVYGIHSSPRTNSQVNDCPFFAWFTSVEEKDRHRRAFGSRCLNCGSEGQFVRDCVKGYINASSMLNRNLANGSKAEVKARWDRWLNRLQQW 286
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BLAST of mRNA_E-fasciculatus_F_contig14032.2959.1 vs. uniprot
Match: D7G674_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G674_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 9.500e-38
Identity = 61/87 (70.11%), Postives = 74/87 (85.06%), Query Frame = 3 
Query:    3 GRADGGYVGRKVMTVAQMDKDDENDEFERVYEIHVAPKTANQMRDCPFFVWFTSREEKDRQRQAFGLRCLNCGSDTHFVRDCDKGYM 263
            GR DGGY GR+VMTV ++D +DE  EF+RVY+IHV+P+T +QM+DCPFF WFTS EEKDR R+AFG RCL CGS+ HFVRDCDKGY+
Sbjct:  164 GRLDGGYGGRRVMTVDEVDCEDECAEFQRVYDIHVSPRTNSQMKDCPFFAWFTSVEEKDRHRRAFGSRCLKCGSEGHFVRDCDKGYI 250
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BLAST of mRNA_E-fasciculatus_F_contig14032.2959.1 vs. uniprot
Match: A0A6H5K255_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K255_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 6.160e-28
Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = 3 
Query:    3 GRADGGYVGRKVMTVAQMDKDDENDEFERVYEIHVAPKTANQMRDCPFFVWFTSREEKDRQRQAFGLRCLNCGSDTHFVRDCDKGYM 263
            GR+DGGY GR VMTV  MD +DE  EF+RVY+IH AP+T +Q  DCPFF WFTS EEKDR R+AFGL CLNCGS+ HFVR   +G +
Sbjct:  602 GRSDGGYGGR-VMTVEDMDYEDECAEFKRVYDIHAAPRTNSQATDCPFFAWFTSVEEKDRHRRAFGLTCLNCGSEGHFVRIVIRGTL 687
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BLAST of mRNA_E-fasciculatus_F_contig14032.2959.1 vs. uniprot
Match: A0A6H5K1N6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N6_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.470e-23
Identity = 55/138 (39.86%), Postives = 83/138 (60.14%), Query Frame = 3 
Query:   27 GRKVMTVAQMDKDDENDEFERVYEIHVAPKTANQMRD---CPFFVWFTSREEKDRQRQAFGLRCLNCGSDTHFVRDCDKGYMNVSKILNPNLAKGTAKEVKDRWERWLSRFQHWHASRMENRRRGYNN*GCDGRLATL 431
            G +VM + + + +DE  EF++V+  +VA +      D    PF+  F SR+E+D  RQA+GL+CLNCG  +HFVR+C   ++N S +LNP L +G  + VK+RW +WL R + WH      +RR   N G D +L  +
Sbjct:  722 GARVMNIHE-EMEDEEKEFKKVH--YVATQWEKGKGDESYIPFYTRFDSRKEQDEARQAYGLKCLNCGDQSHFVRECTHPFINKSNMLNPELGQGPPQLVKERWSKWLKRLRDWH-----EQRRCLKNTGGDKQLEDM 851
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14032.2959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KRF6_9PHAE3.970e-5767.67CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KBL4_9PHAE1.770e-5466.92CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5K0Q4_9PHAE7.410e-5164.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G674_ECTSI9.500e-3870.11CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K255_9PHAE6.160e-2865.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1N6_9PHAE2.470e-2339.86CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14032contigE-fasciculatus_F_contig14032:2590..3104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size515
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14032.2959.1prot_E-fasciculatus_F_contig14032.2959.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14032 2628..2993 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927895.5104728-UTR-E-fasciculatus_F_contig14032:2589..26271622927895.5104728-UTR-E-fasciculatus_F_contig14032:2589..2627Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14032 2590..2627 +
1695995742.378073-UTR-E-fasciculatus_F_contig14032:2589..26271695995742.378073-UTR-E-fasciculatus_F_contig14032:2589..2627Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14032 2590..2627 +
1622927895.545896-UTR-E-fasciculatus_F_contig14032:2993..31041622927895.545896-UTR-E-fasciculatus_F_contig14032:2993..3104Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14032 2994..3104 +
1695995742.3967602-UTR-E-fasciculatus_F_contig14032:2993..31041695995742.3967602-UTR-E-fasciculatus_F_contig14032:2993..3104Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14032 2994..3104 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927895.5280805-CDS-E-fasciculatus_F_contig14032:2627..29931622927895.5280805-CDS-E-fasciculatus_F_contig14032:2627..2993Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14032 2628..2993 +
1695995742.3879576-CDS-E-fasciculatus_F_contig14032:2627..29931695995742.3879576-CDS-E-fasciculatus_F_contig14032:2627..2993Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14032 2628..2993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14032.2959.1

>prot_E-fasciculatus_F_contig14032.2959.1 ID=prot_E-fasciculatus_F_contig14032.2959.1|Name=mRNA_E-fasciculatus_F_contig14032.2959.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=122bp
MTVAQMDKDDENDEFERVYEIHVAPKTANQMRDCPFFVWFTSREEKDRQR
QAFGLRCLNCGSDTHFVRDCDKGYMNVSKILNPNLAKGTAKEVKDRWERW
LSRFQHWHASRMENRRRGYNN*
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mRNA from alignment at E-fasciculatus_F_contig14032:2590..3104+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14032.2959.1 ID=mRNA_E-fasciculatus_F_contig14032.2959.1|Name=mRNA_E-fasciculatus_F_contig14032.2959.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=515bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14032:2590..3104+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAAGGGCGGATGGAGGGTATGTGGGGAGGAAAGTCATGACGGTGGCA
CAGATGGACAAGGACGACGAGAATGACGAGTTCGAAAGAGTGTATGAAAT
CCATGTAGCACCGAAAACGGCCAATCAAATGAGGGACTGTCCATTCTTTG
TTTGGTTTACCTCTAGAGAGGAAAAGGACAGGCAGAGGCAAGCATTCGGG
TTGAGGTGTTTGAACTGTGGGAGTGATACACACTTCGTGAGAGACTGTGA
CAAAGGATACATGAATGTCTCGAAAATATTGAACCCCAATTTGGCGAAGG
GAACGGCCAAGGAAGTGAAGGACAGGTGGGAGAGGTGGCTGAGCCGTTTT
CAGCACTGGCACGCCTCCCGCATGGAGAACAGAAGGCGGGGTTACAATAA
CTGAGGGTGCGACGGTCGGTTGGCCACCTTGCCGACAGCACCGGGGCCAT
ATTATGTGTGGGGTACTTGGGGTGAAGCAAACCCGAAAATGAATGCAAGG
ATGGTGAAGGGTGAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14032:2590..3104+

>mRNA_E-fasciculatus_F_contig14032.2959.1 ID=mRNA_E-fasciculatus_F_contig14032.2959.1|Name=mRNA_E-fasciculatus_F_contig14032.2959.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=732bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14032:2590..3104+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACGGTGGCACAGATGGACAAGGACGACGAGAATGACGAGTTCGAAAG
AGTGTATGAAATCCATGTAGCACCGAAAACGGCCAATCAAATGAGGGACT
GTCCATTCTTTGTTTGGTTTACCTCTAGAGAGGAAAAGGACAGGCAGAGG
CAAGCATTCGGGTTGAGGTGTTTGAACTGTGGGAGTGATACACACTTCGT
GAGAGACTGTGACAAAGGATACATGAATGTCTCGAAAATATTGAACCCCA
ATTTGGCGAAGGGAACGGCCAAGGAAGTGAAGGACAGGTGGGAGAGGTGG
CTGAGCCGTTTTCAGCACTGGCACGCCTCCCGCATGGAGAACAGAAGGCG
GGGTTACAATAACTGAATGACGGTGGCACAGATGGACAAGGACGACGAGA
ATGACGAGTTCGAAAGAGTGTATGAAATCCATGTAGCACCGAAAACGGCC
AATCAAATGAGGGACTGTCCATTCTTTGTTTGGTTTACCTCTAGAGAGGA
AAAGGACAGGCAGAGGCAAGCATTCGGGTTGAGGTGTTTGAACTGTGGGA
GTGATACACACTTCGTGAGAGACTGTGACAAAGGATACATGAATGTCTCG
AAAATATTGAACCCCAATTTGGCGAAGGGAACGGCCAAGGAAGTGAAGGA
CAGGTGGGAGAGGTGGCTGAGCCGTTTTCAGCACTGGCACGCCTCCCGCA
TGGAGAACAGAAGGCGGGGTTACAATAACTGA
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