mRNA_E-fasciculatus_F_contig1403.2956.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1403.2956.1 vs. uniprot
Match: D8LLU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU4_ECTSI) HSP 1 Score: 496 bits (1277), Expect = 1.040e-159 Identity = 481/726 (66.25%), Postives = 492/726 (67.77%), Query Frame = 3
Query: 45 LVLSVFSGVLRWAKLENEAKERQRALLGELEGGEGGERGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRPEGTTTASACDADGMHVEGGVRDAATAAVEEITSTAIXXXXXXXXXXXXXRRPIPAATTTTDGLGNAARR---DDAGYEQDGTGSDSEGKTDDEAGSHPSSEAETGSHEGDPADRISAAAXXXXXXXXXXXXXXXXXXXXXXXXXX----GQEGALAAGATSKADGSREHEVDQAWSVVARPARKKKTPLPPXXXQRPSPRPSSPPLSAVVRG-SAGRVRALGNKGPPGFVASRNRSTDYPALPAREPVSRGAVSGLSAMPSSEKSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPQATVSDVTPVAVVXXXXXXXXXXXAVVNTRCSISPCDAAAPAPVAAAAHVAADEQQEAVPVLPAQSGSHQEVNSDGGNSDEKQ--GPLVRRQLNVNANAWQPPTPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFGHNGFAPMXXXXXXXXXXHMHPAGQNNGMAGDPXXXXXXXXXXXXXL-GPHPVSGGRVMMGGRPEEVGGMRGGT-LPDGASMPSNVASVAQGMLEASSSQAQALALRVEHLVWGMEAMSAGLSMAQLDALKTVLLDQVARVDEAKV 2186
+ L++ WAKLENEAKERQRALLGELEGGEGGERG XXXXXXXXXXXXXXXXXXXXXXX E TTT ACDADGMHVEGGVRDAATAAVEEITSTAI RRPI AATTTTDGLGNA RR DAGYEQDGTGSDSEGKTDDEAGSHPSSEAETGSHEGDPADR S AA XXXXXXXXXXXXXXXXXXXXXXXXX GQEGALAAGATSKADGSREHEVD+AWSVVARPARKKKT LPP QRPS RPSSPPLSAVVRG AGRVRALGNKGP GFVASRNRSTDYPALPARE VSRGA + VV+TRCS+SPCDAA PAPVAA G LVRRQLNVNANAWQPP PSXXXX XXXXXX PSA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FGHNGFAPM HMHPA +N MAGDP XXXXXXXXX PH VSGG VMMG RPEEVGGMRG +PDGA MP NVASVAQGMLE+SS QAQALALRVEHLVWGMEAMSAGLSMAQLD LK VLLDQV RVDEAK+
Sbjct: 217 VALNLIKKATAWAKLENEAKERQRALLGELEGGEGGERGGNGRSSGATXXXXXXXXXXXXXXXXXXXXXXX--LEDTTTP-ACDADGMHVEGGVRDAATAAVEEITSTAITAAVTTASQTAPSRRPIAAATTTTDGLGNAERRRDGGDAGYEQDGTGSDSEGKTDDEAGSHPSSEAETGSHEGDPADRTSGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQEGALAAGATSKADGSREHEVDEAWSVVARPARKKKTTLPPPRAQRPSSRPSSPPLSAVVRGVPAGRVRALGNKGPQGFVASRNRSTDYPALPAREAVSRGAATST--------------------------------------------------------------------------VVDTRCSVSPCDAARPAPVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLVRRQLNVNANAWQPPIPSXXXXLQQPMQQHMGMQXXXXXXHMH----PSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGNATPFGHNGFAPMPQPAGPPPPMHMHPARNSNSMAGDPSRAMXXXXXXXXXXXAPHAVSGGGVMMGARPEEVGGMRGAAAMPDGAPMPGNVASVAQGMLESSSPQAQALALRVEHLVWGMEAMSAGLSMAQLDTLKAVLLDQVGRVDEAKL 861
BLAST of mRNA_E-fasciculatus_F_contig1403.2956.1 vs. uniprot
Match: A0A6H5K161_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K161_9PHAE) HSP 1 Score: 408 bits (1049), Expect = 1.660e-125 Identity = 443/656 (67.53%), Postives = 458/656 (69.82%), Query Frame = 3
Query: 261 RPEGTTTASACDADGMHVEGGVRDAATAAVEEITSTAIXXXXXXXXXXXXX--RRPIPAATTTTDGLGNAARRDD---AGYEQDGTGSDSEGKTDDEAGSHPSSEAETGSHEGDPADRISAAAXXXXXXXXXXXXXXXXXXXXXXXXXXGQEGALAAGATSKADGSREHEVDQAWSVVARPARKKKTPLPPXXXQRPSPRPSSPPLSAVVR-GSAGRVRALGNKGPPGFVASRNRSTDYPALPAREPVSRGAVSGLSAMPSSEKSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPQATVSDVTPVAVVXXXXXXXXXXXAVVNTRCSISPCDAAAPAPVAAAAHVAADEQQEAVPVLPAQSGSHQEVNSDGG-NSDEKQGPLVRRQLNVNANAWQPPTPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------NFGHNGFAPMXXXXXXXXXXHMHPAGQNNGMAGDPXXXXXXXXXXXXX-LGPHPVSGGRVMMGGRPEEVGGMRGGTLPDGASMPSNVASVAQGMLEASSSQAQALALRVEHLVWGMEAMSAGLSMAQLDALKTVLLDQVARVDEAKV 2186
R EGTTT SA DA+GMHVEGGVRDAATAAVEEITSTA+ XXXXXXXXXXXX RRPI +ATTTTDGLGN+ R D AG+EQ GTGSDSEGKTDDEAGSHPSSEAETGSHEGD ADR S AAXXXXXXXXXXXXXXXXXXXXXXXXXX QEGALAAGATS ADG R HEVD+AWSVVARPARKKKT LP +RPSPRPSSPPLSAVV G AGRVRALGNKG + PA AV G E +G PP ATVSDV XXXXXXXXXXX A A AHVAAD Q+EAVPVLPAQ+G H E + NS+EKQGPLVRRQLNVNANAWQPP PS XXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXX XX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NFG N FAPM HMHPAG NGM GDP XXXXXX L PH VSG VMMG RPE VGGMRG +PDG MP NVASVAQ MLEASS QAQALALRVEHLVWGMEAMSAGLSMAQLD LK VLLDQVARVDEAK+
Sbjct: 289 RLEGTTT-SAYDANGMHVEGGVRDAATAAVEEITSTAVTXXXXXXXXXXXXXXRRPIASATTTTDGLGNSEGRGDGGDAGHEQYGTGSDSEGKTDDEAGSHPSSEAETGSHEGDFADRTSRAAXXXXXXXXXXXXXXXXXXXXXXXXXX-QEGALAAGATSDADGGRAHEVDEAWSVVARPARKKKTALPTLPARRPSPRPSSPPLSAVVLVGPAGRVRALGNKGXXXXXXXAVTTAFVPA----------AVGGGQGGSGREGAGAREQGSSRASTPANATYETAAPAAAAAAVAS------PPPATVSDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPA------VAHVAADGQEEAVPVLPAQTGGHHEDSXXXXXNSNEKQGPLVRRQLNVNANAWQPPIPSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVAXXMGLVAGNGLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNAANFGQNSFAPMPQPTGPPPPMHMHPAGNINGMVGDPSPATMMPXXXXXXXLAPHAVSGSGVMMGARPEGVGGMRGAAMPDGTPMPGNVASVAQAMLEASSPQAQALALRVEHLVWGMEAMSAGLSMAQLDTLKAVLLDQVARVDEAKL 920 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1403.2956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1403.2956.1 >prot_E-fasciculatus_F_contig1403.2956.1 ID=prot_E-fasciculatus_F_contig1403.2956.1|Name=mRNA_E-fasciculatus_F_contig1403.2956.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=627bp MHVEGGVRDAATAAVEEITSTAITTAAAAASQTAPSRRPIPAATTTTDGLback to top mRNA from alignment at E-fasciculatus_F_contig1403:14733..18106- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1403.2956.1 ID=mRNA_E-fasciculatus_F_contig1403.2956.1|Name=mRNA_E-fasciculatus_F_contig1403.2956.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3374bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1403:14733..18106- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1403:14733..18106- >mRNA_E-fasciculatus_F_contig1403.2956.1 ID=mRNA_E-fasciculatus_F_contig1403.2956.1|Name=mRNA_E-fasciculatus_F_contig1403.2956.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3762bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1403:14733..18106- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |