mRNA_E-fasciculatus_F_contig1403.2955.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1403.2955.1
Unique NamemRNA_E-fasciculatus_F_contig1403.2955.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1403.2955.1 vs. uniprot
Match: A0A6H5J9L9_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9L9_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 8.730e-41
Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 1 
Query:    1 MAGKEPSPKVSKRKGGAKARKXXXXXXXXXXXGVDGITLKEKGGAG--GDDGPQARNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRR 288
            MAGKEPSPKVSKRKGGAKARKXXXXXXXXXXXGV+GITLKEKGGAG  GDDGPQARNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRR
Sbjct:    1 MAGKEPSPKVSKRKGGAKARKXXXXXXXXXXXGVEGITLKEKGGAGVDGDDGPQARNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRR 98
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BLAST of mRNA_E-fasciculatus_F_contig1403.2955.1 vs. uniprot
Match: A0A835ZA40_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA40_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 9.090e-12
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:   97 GVDGITLKEK-GGAGGDDGPQARNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRR 288
            GVDG+T++++  GA  D     R A+G+L SE RARDIKIQ FSLS  SK LVED+ +E+NYG+R
Sbjct:   33 GVDGLTVEDRTDGATADHSESGRMATGVLVSEKRARDIKIQGFSLSLFSKPLVEDTILELNYGQR 97
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BLAST of mRNA_E-fasciculatus_F_contig1403.2955.1 vs. uniprot
Match: A0A8H7ZNL0_9FUNG (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H7ZNL0_9FUNG)

HSP 1 Score: 64.3 bits (155), Expect = 6.780e-10
Identity = 31/63 (49.21%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:  100 VDGITLKEKGGAGGDDGPQARNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRR 288
            V G+ L   G A   DG   R+  G+L S+ ++RDIKI+SF+LSFH ++L++D+TIE+N+GRR
Sbjct:   86 VSGLQL---GDANSKDGVADRSCVGVLTSDPKSRDIKIESFTLSFHGRLLIQDATIELNFGRR 145
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BLAST of mRNA_E-fasciculatus_F_contig1403.2955.1 vs. uniprot
Match: A0A0E9NAQ1_SAICN (Uncharacterized protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NAQ1_SAICN)

HSP 1 Score: 63.9 bits (154), Expect = 9.740e-10
Identity = 29/64 (45.31%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:   97 GVDGITLKEKGGAGGDDGPQARNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRR 288
            G+DG+++++      D+    R+A G+L S+ R+RDIKI+ +SLSFH ++L+E++TIE+NYG+R
Sbjct:   44 GIDGMSIED------DNSNFDRSAVGVLTSDQRSRDIKIEQYSLSFHGRVLIENATIELNYGQR 101
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BLAST of mRNA_E-fasciculatus_F_contig1403.2955.1 vs. uniprot
Match: UPI000866977D (uncharacterized protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=UPI000866977D)

HSP 1 Score: 63.9 bits (154), Expect = 1.020e-9
Identity = 29/64 (45.31%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:   97 GVDGITLKEKGGAGGDDGPQARNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRR 288
            G+DG+++++      D+    R+A G+L S+ R+RDIKI+ +SLSFH ++L+E++TIE+NYG+R
Sbjct:  975 GIDGMSIED------DNSNFDRSAVGVLTSDQRSRDIKIEQYSLSFHGRVLIENATIELNYGQR 1032
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BLAST of mRNA_E-fasciculatus_F_contig1403.2955.1 vs. uniprot
Match: B6JW30_SCHJY (Ribosome biogenesis ATPase (Fragment) n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6JW30_SCHJY)

HSP 1 Score: 62.8 bits (151), Expect = 2.480e-9
Identity = 31/63 (49.21%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:  100 VDGITLKEKGGAGGDDGPQARNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRR 288
            VD +T K       DD    R+ASG+L S+A +RDIKI+S++LSFH ++L+E++TIE+N+G+R
Sbjct:   44 VDDVT-KSMANVSTDDPMFERSASGVLVSQAMSRDIKIESYTLSFHGRLLIENATIELNHGQR 105
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BLAST of mRNA_E-fasciculatus_F_contig1403.2955.1 vs. uniprot
Match: A0A397U9W9_9GLOM (P-loop containing nucleoside triphosphate hydrolase protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397U9W9_9GLOM)

HSP 1 Score: 62.0 bits (149), Expect = 4.620e-9
Identity = 24/43 (55.81%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:  160 RNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRR 288
            R A+G+L S++RA+D+KI+ +SLSFH ++L+E++TIE+N+GRR
Sbjct:   61 RTANGVLTSQSRAKDVKIEQYSLSFHGRVLIENATIELNFGRR 103
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BLAST of mRNA_E-fasciculatus_F_contig1403.2955.1 vs. uniprot
Match: A0A8H4A6H7_GIGMA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4A6H7_GIGMA)

HSP 1 Score: 61.6 bits (148), Expect = 6.110e-9
Identity = 24/43 (55.81%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:  160 RNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRR 288
            R A+G+L S+ RA+D+KI+ +SLSFH ++L+E++TIE+N+GRR
Sbjct:   61 RTANGVLTSQTRAKDVKIEQYSLSFHGRVLIENATIELNFGRR 103
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BLAST of mRNA_E-fasciculatus_F_contig1403.2955.1 vs. uniprot
Match: A0A137PEX8_CONC2 (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137PEX8_CONC2)

HSP 1 Score: 60.5 bits (145), Expect = 1.600e-8
Identity = 25/43 (58.14%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:  160 RNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRR 288
            R+A+G+LAS+  +RDIKI+SF+LSFH ++L+ ++TIE+N+GRR
Sbjct:   42 RSATGVLASQESSRDIKIESFTLSFHGRLLISNATIELNFGRR 84
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BLAST of mRNA_E-fasciculatus_F_contig1403.2955.1 vs. uniprot
Match: A0A2N1NWU9_9GLOM (P-loop containing nucleoside triphosphate hydrolase protein n=10 Tax=Eukaryota TaxID=2759 RepID=A0A2N1NWU9_9GLOM)

HSP 1 Score: 60.1 bits (144), Expect = 2.190e-8
Identity = 25/43 (58.14%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:  160 RNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRR 288
            R A+G+LAS+ R+RDIKI+ +SLSF+ ++LV+++TIE+N+GRR
Sbjct:   59 RTATGVLASQPRSRDIKIEQYSLSFYGRVLVDNATIELNFGRR 101
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1403.2955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9L9_9PHAE8.730e-4196.94ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835ZA40_9STRA9.090e-1256.92P-loop containing nucleoside triphosphate hydrolas... [more]
A0A8H7ZNL0_9FUNG6.780e-1049.21P-loop containing nucleoside triphosphate hydrolas... [more]
A0A0E9NAQ1_SAICN9.740e-1045.31Uncharacterized protein n=1 Tax=Saitoella complica... [more]
UPI000866977D1.020e-945.31uncharacterized protein n=1 Tax=Saitoella complica... [more]
B6JW30_SCHJY2.480e-949.21Ribosome biogenesis ATPase (Fragment) n=1 Tax=Schi... [more]
A0A397U9W9_9GLOM4.620e-955.81P-loop containing nucleoside triphosphate hydrolas... [more]
A0A8H4A6H7_GIGMA6.110e-955.81P-loop containing nucleoside triphosphate hydrolas... [more]
A0A137PEX8_CONC21.600e-858.14p-loop containing nucleoside triphosphate hydrolas... [more]
A0A2N1NWU9_9GLOM2.190e-858.14P-loop containing nucleoside triphosphate hydrolas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1403contigE-fasciculatus_F_contig1403:10023..10322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score65.1
Seed ortholog evalue2.2e-08
Seed eggNOG ortholog4897.EEB05581
KEGG koko:K06185
GOsGO:0000054,GO:0000056,GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008144,GO:0008150,GO:0015031,GO:0015833,GO:0015931,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022613,GO:0030554,GO:0031503,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0033750,GO:0034613,GO:0035639,GO:0036094,GO:0042254,GO:0042886,GO:0043167,GO:0043168,GO:0044085,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363
EggNOG free text desc.Ribosome biogenesis ATPase
EggNOG OGs38D7Z@33154,3MBPV@451866,3NUDQ@4751,3QM35@4890,COG0488@1,KOG0927@2759
COG Functional cat.S
Best tax levelTaphrinomycotina
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-03_001300.1
Exons1
Model size300
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927895.1420908-CDS-E-fasciculatus_F_contig1403:10022..103221622927895.1420908-CDS-E-fasciculatus_F_contig1403:10022..10322Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1403 10023..10322 -
1695995742.2496204-CDS-E-fasciculatus_F_contig1403:10022..103221695995742.2496204-CDS-E-fasciculatus_F_contig1403:10022..10322Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1403 10023..10322 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1403.2955.1prot_E-fasciculatus_F_contig1403.2955.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1403 10023..10322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1403.2955.1

>prot_E-fasciculatus_F_contig1403.2955.1 ID=prot_E-fasciculatus_F_contig1403.2955.1|Name=mRNA_E-fasciculatus_F_contig1403.2955.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=100bp
MAGKEPSPKVSKRKGGAKARKAAKAAEAALAAGVDGITLKEKGGAGGDDG
PQARNASGILASEARARDIKIQSFSLSFHSKILVEDSTIEMNYGRRCVCV
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mRNA from alignment at E-fasciculatus_F_contig1403:10023..10322-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1403.2955.1 ID=mRNA_E-fasciculatus_F_contig1403.2955.1|Name=mRNA_E-fasciculatus_F_contig1403.2955.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=300bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1403:10023..10322- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCGGAAAAGAGCCGAGTCCGAAGGTGTCGAAGCGAAAGGGGGGAGC
CAAGGCCAGGAAGGCCGCGAAGGCGGCGGAAGCGGCACTGGCCGCGGGGG
TGGACGGGATCACTCTCAAGGAGAAGGGGGGGGCGGGCGGAGATGACGGG
CCCCAGGCGCGTAACGCCTCCGGCATTCTCGCCAGCGAGGCGCGGGCGCG
GGACATCAAGATCCAGTCGTTCTCGCTCAGCTTCCACTCCAAGATCCTGG
TGGAGGACTCGACGATCGAAATGAACTACGGCCGAAGGTGTGTGTGTGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1403:10023..10322-

>mRNA_E-fasciculatus_F_contig1403.2955.1 ID=mRNA_E-fasciculatus_F_contig1403.2955.1|Name=mRNA_E-fasciculatus_F_contig1403.2955.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=600bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1403:10023..10322- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCGGAAAAGAGCCGAGTCCGAAGGTGTCGAAGCGAAAGGGGGGAGC
CAAGGCCAGGAAGGCCGCGAAGGCGGCGGAAGCGGCACTGGCCGCGGGGG
TGGACGGGATCACTCTCAAGGAGAAGGGGGGGGCGGGCGGAGATGACGGG
CCCCAGGCGCGTAACGCCTCCGGCATTCTCGCCAGCGAGGCGCGGGCGCG
GGACATCAAGATCCAGTCGTTCTCGCTCAGCTTCCACTCCAAGATCCTGG
TGGAGGACTCGACGATCGAAATGAACTACGGCCGAAGGTGTGTGTGTGTG
ATGGCCGGAAAAGAGCCGAGTCCGAAGGTGTCGAAGCGAAAGGGGGGAGC
CAAGGCCAGGAAGGCCGCGAAGGCGGCGGAAGCGGCACTGGCCGCGGGGG
TGGACGGGATCACTCTCAAGGAGAAGGGGGGGGCGGGCGGAGATGACGGG
CCCCAGGCGCGTAACGCCTCCGGCATTCTCGCCAGCGAGGCGCGGGCGCG
GGACATCAAGATCCAGTCGTTCTCGCTCAGCTTCCACTCCAAGATCCTGG
TGGAGGACTCGACGATCGAAATGAACTACGGCCGAAGGTGTGTGTGTGTG
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