mRNA_E-fasciculatus_F_contig1403.2953.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1403.2953.1
Unique NamemRNA_E-fasciculatus_F_contig1403.2953.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1403.2953.1 vs. uniprot
Match: D8LIR7_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIR7_ECTSI)

HSP 1 Score: 344 bits (882), Expect = 3.260e-115
Identity = 172/175 (98.29%), Postives = 173/175 (98.86%), Query Frame = 1 
Query:    1 KEDYLFSGLHFGIDSDSRIALVGPNGAGKSTLLKLMVGQLQPVEGNVSRRSGLSIGRYHQHSAEVLDLTKSPVDYLKDKFCEKFPELKFEGWRSKVGSFGVTGDAQLNPIENLSDGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMARAIKQFQGGVIVISHDFRLLQQV 525
            KEDYLFSGLHFGIDSDSRIALVGPNGAGKSTLLKLMVGQLQPVEGNVSRRSGLSIGRYHQHSAEVLDL KSPVDYLKDKFC+KFPELKFE WRSKVGSFGVTGDAQLNPIENLSDGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMARAIKQFQGGVIVISHDFRLLQQV
Sbjct:  273 KEDYLFSGLHFGIDSDSRIALVGPNGAGKSTLLKLMVGQLQPVEGNVSRRSGLSIGRYHQHSAEVLDLAKSPVDYLKDKFCDKFPELKFEQWRSKVGSFGVTGDAQLNPIENLSDGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMARAIKQFQGGVIVISHDFRLLQQV 447
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1403.2953.1 vs. uniprot
Match: A0A6H5J9L9_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9L9_9PHAE)

HSP 1 Score: 343 bits (879), Expect = 3.250e-113
Identity = 171/175 (97.71%), Postives = 173/175 (98.86%), Query Frame = 1 
Query:    1 KEDYLFSGLHFGIDSDSRIALVGPNGAGKSTLLKLMVGQLQPVEGNVSRRSGLSIGRYHQHSAEVLDLTKSPVDYLKDKFCEKFPELKFEGWRSKVGSFGVTGDAQLNPIENLSDGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMARAIKQFQGGVIVISHDFRLLQQV 525
            KEDYLFSGLHFGIDSDSRIALVGPNGAGKSTLLKLMVGQLQPVEGNVSRRSGLSIGRYHQHSAEVLDL KSPVDYLKDKFC+KFP+LKFE WRSKVGSFGVTGDAQLNPIENLSDGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMARAIKQFQGGVIVISHDFRLLQQV
Sbjct:  395 KEDYLFSGLHFGIDSDSRIALVGPNGAGKSTLLKLMVGQLQPVEGNVSRRSGLSIGRYHQHSAEVLDLAKSPVDYLKDKFCDKFPDLKFEQWRSKVGSFGVTGDAQLNPIENLSDGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMARAIKQFQGGVIVISHDFRLLQQV 569
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1403.2953.1 vs. uniprot
Match: A0A835ZA40_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA40_9STRA)

HSP 1 Score: 273 bits (699), Expect = 2.850e-86
Identity = 131/175 (74.86%), Postives = 153/175 (87.43%), Query Frame = 1 
Query:    1 KEDYLFSGLHFGIDSDSRIALVGPNGAGKSTLLKLMVGQLQPVEGNVSRRSGLSIGRYHQHSAEVLDLTKSPVDYLKDKFCEKFPELKFEGWRSKVGSFGVTGDAQLNPIENLSDGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMARAIKQFQGGVIVISHDFRLLQQV 525
            +EDYLF  L FGID DSRIALVGPNGAGKSTLLKL+VG++Q  EG +SRRSG+S+GRYHQHSA+ LD  KSPV+YL DKF +K+P L+++ WRSKVG++G+ GDAQL PI NLSDGL+TRLVFAEIAL  PHILLLDEPTNHASMEMIDS+A A KQF+GG+IVISHDFRLL +V
Sbjct:  394 REDYLFRNLRFGIDCDSRIALVGPNGAGKSTLLKLIVGEIQACEGTISRRSGVSLGRYHQHSADQLDFDKSPVEYLTDKFKDKYPALQWQDWRSKVGTYGIVGDAQLQPIRNLSDGLKTRLVFAEIALTNPHILLLDEPTNHASMEMIDSLAEACKQFEGGLIVISHDFRLLTKV 568
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1403.2953.1 vs. uniprot
Match: A0A5J4Z7G4_PORPP (Probable ATP-dependent transporter ycf16 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z7G4_PORPP)

HSP 1 Score: 248 bits (633), Expect = 2.470e-76
Identity = 122/175 (69.71%), Postives = 145/175 (82.86%), Query Frame = 1 
Query:    1 KEDYLFSGLHFGIDSDSRIALVGPNGAGKSTLLKLMVGQLQPVEGNVSRRSGLSIGRYHQHSAEVLDLTKSPVDYLKDKFCEKFPELKFEGWRSKVGSFGVTGDAQLNPIENLSDGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMARAIKQFQGGVIVISHDFRLLQQV 525
            KEDYL+S L FGIDSDSRI+LVGPNGAGKSTLLKL+VG++QP EG+VS +SG+ IGRYHQHS + LDL  SPV+YLK +F      L  + WRS+VG FG+TG+AQLNPI  LSDGL+TRLVFA+IAL +PH+LLLDEPTNH  MEMIDS+A AI  F GGV+++SHDFRLL QV
Sbjct:  407 KEDYLYSDLSFGIDSDSRISLVGPNGAGKSTLLKLVVGEIQPCEGDVSLKSGVRIGRYHQHSNDQLDLDVSPVEYLKKRFEGLHDNL--QAWRSEVGRFGITGEAQLNPINQLSDGLKTRLVFADIALQKPHVLLLDEPTNHCDMEMIDSLADAINAFDGGVVLVSHDFRLLSQV 579
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1403.2953.1 vs. uniprot
Match: A0A7S3HE41_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HE41_9STRA)

HSP 1 Score: 238 bits (606), Expect = 2.470e-72
Identity = 116/175 (66.29%), Postives = 135/175 (77.14%), Query Frame = 1 
Query:    1 KEDYLFSGLHFGIDSDSRIALVGPNGAGKSTLLKLMVGQLQPVEGNVSRRSGLSIGRYHQHSAEVLDLTKSPVDYLKDKFCEKFPELKFEGWRSKVGSFGVTGDAQLNPIENLSDGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMARAIKQFQGGVIVISHDFRLLQQV 525
            K+DYLF  + FGI   SRI LVGPNGAGKSTL+KL+ G+  P EG VS RSGLSIGR+HQHSAE+LD  KSPVDY+  K+ EK+P  + E WRS VG++G+  D  L PI  LSDGL+TRLVF EI+L  PH+LL DEPTN A MEMIDSM+ AI  F GGV+VISHDFRLLQQV
Sbjct:  403 KKDYLFKNISFGIHPKSRIVLVGPNGAGKSTLIKLICGENGPTEGTVSTRSGLSIGRFHQHSAEILDFDKSPVDYISSKYQEKYPAHRLEEWRSVVGNYGIPKDYHLEPIRCLSDGLKTRLVFCEISLQNPHLLLFDEPTNAADMEMIDSMSEAINAFNGGVVVISHDFRLLQQV 577
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1403.2953.1 vs. uniprot
Match: A0A0J0XUR2_9TREE (Putative ATP-binding cassette transporter n=1 Tax=Cutaneotrichosporon oleaginosum TaxID=879819 RepID=A0A0J0XUR2_9TREE)

HSP 1 Score: 227 bits (578), Expect = 4.860e-68
Identity = 108/175 (61.71%), Postives = 131/175 (74.86%), Query Frame = 1 
Query:    1 KEDYLFSGLHFGIDSDSRIALVGPNGAGKSTLLKLMVGQLQPVEGNVSRRSGLSIGRYHQHSAEVLDLTKSPVDYLKDKFCEKFPELKFEGWRSKVGSFGVTGDAQLNPIENLSDGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMARAIKQFQGGVIVISHDFRLLQQV 525
            KEDYL+  L+FGID DSRIA+VG NG GKSTLL L+ GQL PVEG VSR   L + +Y QHSA+ L   KSPVD+++ KF EKFPE   + WR  VG FG++G  Q NPI  LSDGLR R+ FAEIAL  PH++L DEPTNH  M  IDS+A AIK+F+GGV+++SHDFRL+ QV
Sbjct:  404 KEDYLYKNLNFGIDMDSRIAIVGDNGTGKSTLLNLITGQLNPVEGTVSRHGQLKLAKYSQHSADQLPFDKSPVDHIQSKFAEKFPEKDLQFWRQCVGRFGLSGAHQTNPINMLSDGLRNRVCFAEIALEHPHVILFDEPTNHLDMASIDSLATAIKEFEGGVVIVSHDFRLISQV 578
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1403.2953.1 vs. uniprot
Match: A0A8H6ZUQ8_PLEOS (Uncharacterized protein n=2 Tax=Pleurotus ostreatus TaxID=5322 RepID=A0A8H6ZUQ8_PLEOS)

HSP 1 Score: 226 bits (575), Expect = 1.560e-67
Identity = 104/175 (59.43%), Postives = 137/175 (78.29%), Query Frame = 1 
Query:    1 KEDYLFSGLHFGIDSDSRIALVGPNGAGKSTLLKLMVGQLQPVEGNVSRRSGLSIGRYHQHSAEVLDLTKSPVDYLKDKFCEKFPELKFEGWRSKVGSFGVTGDAQLNPIENLSDGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMARAIKQFQGGVIVISHDFRLLQQV 525
            KED+L+  L FGID DSR+A++G NGAGKSTLL L+ G LQPVEG+VS+ S L + +Y QHSA+ L   KSP++Y +  F EK+PE     WRS++G FG++G  Q +PI+ LSDGLR R+VFA++A+  PHILLLDEPTNH  ME ID++ARAIK+F+GGV+++SHDFRL+ QV
Sbjct:  412 KEDFLYQNLSFGIDMDSRVAILGANGAGKSTLLHLITGALQPVEGSVSKHSQLKLAKYSQHSADQLPYEKSPIEYFQSLFSEKYPEKDIMAWRSQLGRFGLSGHHQTSPIKQLSDGLRNRVVFAQLAMEHPHILLLDEPTNHLDMESIDALARAIKEFEGGVVIVSHDFRLISQV 586
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1403.2953.1 vs. uniprot
Match: A0A317XYJ8_9BASI (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Testicularia cyperi TaxID=1882483 RepID=A0A317XYJ8_9BASI)

HSP 1 Score: 225 bits (574), Expect = 1.750e-67
Identity = 103/175 (58.86%), Postives = 138/175 (78.86%), Query Frame = 1 
Query:    1 KEDYLFSGLHFGIDSDSRIALVGPNGAGKSTLLKLMVGQLQPVEGNVSRRSGLSIGRYHQHSAEVLDLTKSPVDYLKDKFCEKFPELKFEGWRSKVGSFGVTGDAQLNPIENLSDGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMARAIKQFQGGVIVISHDFRLLQQV 525
            KEDYL+  L FGID DSR+A+VG NG GKSTLL L+ G LQPVEG+V R +GL +G+Y QHSA+ L   KSP++Y++ K+ EKFPE + + WR ++G FG++G  Q +PI  LSDGLR R+VF+++A+ +PHILLLDEPTNH  M  ID++A AIK+F+GGV+++SHDFRL+ QV
Sbjct:  404 KEDYLYKDLSFGIDMDSRVAIVGQNGTGKSTLLNLITGALQPVEGSVQRHAGLKLGKYSQHSADQLPYDKSPLEYMESKYKEKFPEKELQFWRGQLGRFGLSGAHQTSPIRTLSDGLRNRVVFSQLAMEQPHILLLDEPTNHLDMGSIDALALAIKEFEGGVVIVSHDFRLISQV 578
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1403.2953.1 vs. uniprot
Match: A0A1Y1Y684_9FUNG (p-loop containing nucleoside triphosphate hydrolase protein n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y684_9FUNG)

HSP 1 Score: 223 bits (569), Expect = 4.440e-67
Identity = 108/176 (61.36%), Postives = 142/176 (80.68%), Query Frame = 1 
Query:    1 KEDYLFSGLHFGIDSDSRIALVGPNGAGKSTLLKLMVGQLQPVEGNVSRRSGLSIGRYHQHSAEVLDLTKSPVDYLKDKFCEKF-PELKFEGWRSKVGSFGVTGDAQLNPIENLSDGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMARAIKQFQGGVIVISHDFRLLQQV 525
            +E+ L+  L  G+D DSRIALVGPNGAGKSTLLKLM+G+L P+ G VSR + L IG+Y+QHSA+ LD+T SP+DY+++KF E+F  ++ F  WR+++G +G+TG  Q + I NLSDGL+TRLVFAE+AL +PHI+LLDEPTNH  ME IDS+A AI QF GGV+++SHDFRL+ QV
Sbjct:  382 EENSLYRDLELGVDMDSRIALVGPNGAGKSTLLKLMMGELVPISGRVSRHTHLKIGKYNQHSADQLDMTVSPIDYMRNKFGEEFGKDVSF--WRTQIGRYGLTGTHQTSLISNLSDGLKTRLVFAELALAQPHIILLDEPTNHLDMESIDSLADAINQFSGGVVLVSHDFRLISQV 555
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1403.2953.1 vs. uniprot
Match: A0A061H6Y7_9BASI (Uncharacterized protein n=2 Tax=Pseudozyma flocculosa TaxID=84751 RepID=A0A061H6Y7_9BASI)

HSP 1 Score: 224 bits (570), Expect = 5.930e-67
Identity = 101/175 (57.71%), Postives = 139/175 (79.43%), Query Frame = 1 
Query:    1 KEDYLFSGLHFGIDSDSRIALVGPNGAGKSTLLKLMVGQLQPVEGNVSRRSGLSIGRYHQHSAEVLDLTKSPVDYLKDKFCEKFPELKFEGWRSKVGSFGVTGDAQLNPIENLSDGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDSMARAIKQFQGGVIVISHDFRLLQQV 525
            +EDYL+  L+FGID DSR+A+VG NG GKSTLL L+ G LQPVEG+V R +GL +G+Y QHSA+ L   KSP++Y++ K+ EK+PE + + WR ++G FG++G  Q +PI  LSDGLR R+VF+++A+ +PHILLLDEPTNH  M  ID++A AIK+F+GGV+++SHDFRL+ QV
Sbjct:  398 REDYLYKDLNFGIDMDSRVAIVGQNGTGKSTLLNLITGALQPVEGSVQRHAGLKLGKYSQHSADQLPYDKSPLEYMESKYKEKYPEKELQFWRGQLGRFGLSGAHQTSPIRTLSDGLRNRVVFSQLAMEQPHILLLDEPTNHLDMGSIDALALAIKEFEGGVVIVSHDFRLISQV 572
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1403.2953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIR7_ECTSI3.260e-11598.29Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A6H5J9L9_9PHAE3.250e-11397.71ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835ZA40_9STRA2.850e-8674.86P-loop containing nucleoside triphosphate hydrolas... [more]
A0A5J4Z7G4_PORPP2.470e-7669.71Probable ATP-dependent transporter ycf16 n=1 Tax=P... [more]
A0A7S3HE41_9STRA2.470e-7266.29Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A0J0XUR2_9TREE4.860e-6861.71Putative ATP-binding cassette transporter n=1 Tax=... [more]
A0A8H6ZUQ8_PLEOS1.560e-6759.43Uncharacterized protein n=2 Tax=Pleurotus ostreatu... [more]
A0A317XYJ8_9BASI1.750e-6758.86P-loop containing nucleoside triphosphate hydrolas... [more]
A0A1Y1Y684_9FUNG4.440e-6761.36p-loop containing nucleoside triphosphate hydrolas... [more]
A0A061H6Y7_9BASI5.930e-6757.71Uncharacterized protein n=2 Tax=Pseudozyma floccul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1403contigE-fasciculatus_F_contig1403:29..1948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score342.8
Seed ortholog evalue9.4e-92
Seed eggNOG ortholog2880.D8LIR7
Preferred nameARB1
KEGG koko:K06185
GOsGO:0000054,GO:0000056,GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0007154,GO:0008104,GO:0008144,GO:0008150,GO:0009267,GO:0009605,GO:0009653,GO:0009987,GO:0009991,GO:0015031,GO:0015833,GO:0015931,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022613,GO:0030554,GO:0030587,GO:0030684,GO:0030687,GO:0031152,GO:0031288,GO:0031503,GO:0031667,GO:0031668,GO:0031669,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033554,GO:0033750,GO:0034613,GO:0035639,GO:0036094,GO:0042254,GO:0042594,GO:0042624,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044424,GO:0044464,GO:0044764,GO:0045184,GO:0046907,GO:0048856,GO:0050657,GO:0050658,GO:0050896,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051703,GO:0051704,GO:0051716,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071496,GO:0071702,GO:0071705,GO:0071840,GO:0090702,GO:0097159,GO:0097367,GO:0098630,GO:0098743,GO:0099120,GO:1901265,GO:1901363,GO:1990904
EggNOG free text desc.ATPase activity
EggNOG OGsCOG0488@1,KOG0927@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionflagellar associated protein
Ec32 orthologEc-03_001280.1
Exons4
Model size525
Cds size525
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1403.2953.1prot_E-fasciculatus_F_contig1403.2953.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1403 29..1948 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927894.8391335-CDS-E-fasciculatus_F_contig1403:28..2121622927894.8391335-CDS-E-fasciculatus_F_contig1403:28..212Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1403 29..212 -
1695995742.1078718-CDS-E-fasciculatus_F_contig1403:28..2121695995742.1078718-CDS-E-fasciculatus_F_contig1403:28..212Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1403 29..212 -
1622927894.857793-CDS-E-fasciculatus_F_contig1403:783..8931622927894.857793-CDS-E-fasciculatus_F_contig1403:783..893Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1403 784..893 -
1695995742.1206179-CDS-E-fasciculatus_F_contig1403:783..8931695995742.1206179-CDS-E-fasciculatus_F_contig1403:783..893Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1403 784..893 -
1622927894.870071-CDS-E-fasciculatus_F_contig1403:1167..12961622927894.870071-CDS-E-fasciculatus_F_contig1403:1167..1296Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1403 1168..1296 -
1695995742.1311111-CDS-E-fasciculatus_F_contig1403:1167..12961695995742.1311111-CDS-E-fasciculatus_F_contig1403:1167..1296Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1403 1168..1296 -
1622927894.8838212-CDS-E-fasciculatus_F_contig1403:1846..19481622927894.8838212-CDS-E-fasciculatus_F_contig1403:1846..1948Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1403 1847..1948 -
1695995742.1490946-CDS-E-fasciculatus_F_contig1403:1846..19481695995742.1490946-CDS-E-fasciculatus_F_contig1403:1846..1948Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1403 1847..1948 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1403.2953.1

>prot_E-fasciculatus_F_contig1403.2953.1 ID=prot_E-fasciculatus_F_contig1403.2953.1|Name=mRNA_E-fasciculatus_F_contig1403.2953.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=175bp
KEDYLFSGLHFGIDSDSRIALVGPNGAGKSTLLKLMVGQLQPVEGNVSRR
SGLSIGRYHQHSAEVLDLTKSPVDYLKDKFCEKFPELKFEGWRSKVGSFG
VTGDAQLNPIENLSDGLRTRLVFAEIALMRPHILLLDEPTNHASMEMIDS
MARAIKQFQGGVIVISHDFRLLQQV
back to top

mRNA from alignment at E-fasciculatus_F_contig1403:29..1948-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1403.2953.1 ID=mRNA_E-fasciculatus_F_contig1403.2953.1|Name=mRNA_E-fasciculatus_F_contig1403.2953.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1920bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1403:29..1948- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGAGGACTATCTGTTCTCAGGCCTCCACTTCGGTATCGATTCCGACTC
GCGTATCGCACTCGTCGGTCCCAACGGAGCGGGAAAGTCCACGCTGCTCA
AGGTATGTGTGTGTGTGTCTTTGGCTTCTTTCTCGCTTGAAACATGATTT
TCTCCGCAACGGGGCGGGAATTAACACCCTGCCCAAGGTGTTTGCGGGAC
GTGCTTGATATGCTTCTTGTTTAGAGCTACTCCGTACTTGATTACGTTTG
TTTTCGCGATGTGCAGGGATATCACCTATGCTCACGATCACTCTCGTGAC
TGGTTGTCCTTCGTCGATGGTTGTGAACGCGTGGACAATGGTCTAAAACA
CGAGGCCACCAGTTCCGAAGACCAAACGGCAGTTACAGCGGTACCCCCTC
CAACCCCTCCCTTGTGGTCTCAGCTCACCAGTTCTTCAAGTCTTCACGAC
AGTGACAATACTCATCAGTTTCCTAGTCAAGACGGCAGTTACAGAGTATC
CGCAAACCTTCTGTCTTTCTAGCTCACTAGTTTTCAAGCGACAGTTACAG
TGCCCCCTACCCCAGTCTCCTTATGTAGCTCACCAGTCTTGAAGTCAAAA
CGACAGTAACAGTTACACCCCACCCCCTTTTTCCAATCCTTCGTCCTCTC
AGCTCATGGTGGGGCAGTTGCAGCCGGTGGAGGGCAACGTGTCGCGCCGA
TCAGGGCTTAGCATCGGGCGATACCACCAGCACTCAGCCGAGGTGCTGGA
CCTCACCAAGTCTCCGGTCGACTACTTGAAGGTAGGTCGGTGTTGCTGTG
TCTGCTTTTTGTTTTTTTTCGTGGTAAGGTGACGTGTGTGGTGGGCGGGT
GGCAACCAAGGAAGGTTGGTTGAAGGTGGTGATGAGGTCACTTTGTGCGT
GACCTCCTTGCACTAAAATTGTCCCCCCCTTTTATGCTTGTGCTTTTCCT
TAGAGTACAGCGGCCAAGGTTGAGGTCCGTACCGTGTGCAAACGCGTTTG
TTCGAAGTTCGAAGGCGATGTTTTATTTTTCTGTTCTGTTTTCCTTACTG
TGCAGGATAAGTTCTGCGAGAAGTTCCCGGAATTGAAGTTCGAGGGATGG
AGGAGCAAGGTCGGCTCGTTCGGTGTAACCGGCGACGCGCAGCTCAACCC
CATCGAGAACCTCAGGTGTGTGGCACTCCAACTTGATTGATTTAACGTTT
TACGTACAGCTTCAGGGAAAACGTCAACTTGAAGCTGTAGCACTGTTTTT
TCCCCTTCTTAAGCCCTATCACACGCCCTGGCCCGGCGTTATTTCAAAGC
TGGACTACTATACTAAAGTCCACGGCAGTAAGAGTGGCGGTGCTGACAAT
CGCGGTGATGGGATGTACTGCACCACCTCGTCGAGAGTTTTGCAAAGTTG
TATCGTTTGATGTATACATGCTCTTCCGTCATGAAGTCACAGACTTTTAC
TTTGAAAATCGGTCCGGGGGGTGTGCTATTGTTGCTGTGGAAATCGGGCG
GGGTGTGTGTGCTATGTTGCGCCACCCTCACGTACTGCTGTGGCCGGGTT
GTGGGGAGGGTAAAACCTCCGGCCTAGTGCCCCTGCTTTTACCACCGGCG
CCGAACCCATTAATCAATTTCGACACAATTTTGTAGCTGTTTTGACAACG
ATGACCAGAAACAAAGTATCCCCCCCTCCCACCCCCCATCCCAACTTACT
TACTTTCGCGCCTCTTCTGTTTCTCTTCGTTTACAGTGACGGGTTGCGAA
CGCGTCTGGTGTTCGCGGAGATCGCGTTGATGAGGCCCCACATCCTGCTT
CTCGACGAGCCCACCAACCACGCGTCGATGGAGATGATCGACTCTATGGC
ACGCGCCATCAAGCAGTTCCAGGGAGGTGTCATCGTCATCAGTCACGACT
TCCGCCTGTTGCAGCAGGTG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1403:29..1948-

>mRNA_E-fasciculatus_F_contig1403.2953.1 ID=mRNA_E-fasciculatus_F_contig1403.2953.1|Name=mRNA_E-fasciculatus_F_contig1403.2953.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1050bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1403:29..1948- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGAGGACTATCTGTTCTCAGGCCTCCACTTCGGTATCGATTCCGACTC
GCGTATCGCACTCGTCGGTCCCAACGGAGCGGGAAAGTCCACGCTGCTCA
AGAAGGAGGACTATCTGTTCTCAGGCCTCCACTTCGGTATCGATTCCGAC
TCGCGTATCGCACTCGTCGGTCCCAACGGAGCGGGAAAGTCCACGCTGCT
CAAGCTCATGGTGGGGCAGTTGCAGCCGGTGGAGGGCAACGTGTCGCGCC
GATCAGGGCTTAGCATCGGGCGATACCACCAGCACTCAGCCGAGGTGCTG
GACCTCACCAAGTCTCCGGTCGACTACTTGAAGCTCATGGTGGGGCAGTT
GCAGCCGGTGGAGGGCAACGTGTCGCGCCGATCAGGGCTTAGCATCGGGC
GATACCACCAGCACTCAGCCGAGGTGCTGGACCTCACCAAGTCTCCGGTC
GACTACTTGAAGGATAAGTTCTGCGAGAAGTTCCCGGAATTGAAGTTCGA
GGGATGGAGGAGCAAGGTCGGCTCGTTCGGTGTAACCGGCGACGCGCAGC
TCAACCCCATCGAGAACCTCAGGATAAGTTCTGCGAGAAGTTCCCGGAAT
TGAAGTTCGAGGGATGGAGGAGCAAGGTCGGCTCGTTCGGTGTAACCGGC
GACGCGCAGCTCAACCCCATCGAGAACCTCAGTGACGGGTTGCGAACGCG
TCTGGTGTTCGCGGAGATCGCGTTGATGAGGCCCCACATCCTGCTTCTCG
ACGAGCCCACCAACCACGCGTCGATGGAGATGATCGACTCTATGGCACGC
GCCATCAAGCAGTTCCAGGGAGGTGTCATCGTCATCAGTCACGACTTCCG
CCTGTTGCAGCAGGTGTGACGGGTTGCGAACGCGTCTGGTGTTCGCGGAG
ATCGCGTTGATGAGGCCCCACATCCTGCTTCTCGACGAGCCCACCAACCA
CGCGTCGATGGAGATGATCGACTCTATGGCACGCGCCATCAAGCAGTTCC
AGGGAGGTGTCATCGTCATCAGTCACGACTTCCGCCTGTTGCAGCAGGTG
back to top