mRNA_E-fasciculatus_F_contig14026.2952.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14026.2952.1
Unique NamemRNA_E-fasciculatus_F_contig14026.2952.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14026.2952.1 vs. uniprot
Match: D7FMV5_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV5_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 3.750e-43
Identity = 80/97 (82.47%), Postives = 82/97 (84.54%), Query Frame = 1
Query:    1 GGGGAEREWGSGSCRGREPLRSTDLLRIVKDVVNGMLYLHELGVMHRDLKPDNILLDADDRAVIADFGLSRFCHPTNDHTAETGTYRCVCTAVHFHK 291
            GG G EREWGS   RG EPLR TDLLRIV DVVNGMLYLHELGVMHRDLKPDNILLDADDRAVIADFGLSRF HPTNDHTAETGTYR +   V  H+
Sbjct:  481 GGVGGEREWGSRRGRGSEPLRPTDLLRIVTDVVNGMLYLHELGVMHRDLKPDNILLDADDRAVIADFGLSRFSHPTNDHTAETGTYRWMAPEVIRHE 577          
BLAST of mRNA_E-fasciculatus_F_contig14026.2952.1 vs. uniprot
Match: A0A6H5KIL9_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL9_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 2.910e-42
Identity = 77/94 (81.91%), Postives = 81/94 (86.17%), Query Frame = 1
Query:   10 GAEREWGSGSCRGREPLRSTDLLRIVKDVVNGMLYLHELGVMHRDLKPDNILLDADDRAVIADFGLSRFCHPTNDHTAETGTYRCVCTAVHFHK 291
            G EREWGS   RG EPLRSTDLLRI+ DVVNGMLYLHELGVMHRDLKPDNILLDADDRAVIADFGLSRF HPT+DHTAETGTYR +   V  H+
Sbjct:  643 GGEREWGSRRGRGSEPLRSTDLLRIITDVVNGMLYLHELGVMHRDLKPDNILLDADDRAVIADFGLSRFSHPTDDHTAETGTYRWMAPEVIRHE 736          
BLAST of mRNA_E-fasciculatus_F_contig14026.2952.1 vs. uniprot
Match: I2CRD9_NANGC (Serine threonine protein kinase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRD9_NANGC)

HSP 1 Score: 89.4 bits (220), Expect = 9.190e-21
Identity = 46/90 (51.11%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   22 EWGSGSCRGREPLRSTDLLRIVKDVVNGMLYLHELGVMHRDLKPDNILLDADDRAVIADFGLSRFCHPTNDHTAETGTYRCVCTAVHFHK 291
            E GS + R R+  R  D+L +  DV  GM YLH  G+MHRDLKPDN+L+DA  R VIADFGL       ++HT ETGTYR + + V  H+
Sbjct:    2 EGGSLASRLRDSGREVDVLEVAMDVARGMEYLHRRGIMHRDLKPDNLLIDASGRVVIADFGLVCPIIAEDEHTGETGTYRYMASEVIRHE 91          
BLAST of mRNA_E-fasciculatus_F_contig14026.2952.1 vs. uniprot
Match: B6UD76_MAIZE (ATP binding protein n=2 Tax=Zea mays TaxID=4577 RepID=B6UD76_MAIZE)

HSP 1 Score: 76.3 bits (186), Expect = 4.030e-14
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   73 LLRIVKDVVNGMLYLHELGVMHRDLKPDNILLDADDRAVIADFGLSRFCHPTNDHTAETGTYRCVCTAVHFHK 291
            LL+   DV  GM YLH+ G++HRDLK  N+LLD +D   +ADFGL+RF     D TAETGTYR +   V  H+
Sbjct:  358 LLKFALDVCQGMSYLHQKGIIHRDLKSGNLLLDKNDVVKVADFGLARFQDGGGDMTAETGTYRWMAPEVINHQ 430          
BLAST of mRNA_E-fasciculatus_F_contig14026.2952.1 vs. uniprot
Match: A0A3L6EZG4_MAIZE (Serine/threonine-protein kinase STY46 n=2 Tax=Zea mays TaxID=4577 RepID=A0A3L6EZG4_MAIZE)

HSP 1 Score: 76.3 bits (186), Expect = 4.150e-14
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   73 LLRIVKDVVNGMLYLHELGVMHRDLKPDNILLDADDRAVIADFGLSRFCHPTNDHTAETGTYRCVCTAVHFHK 291
            LL+   DV  GM YLH+ G++HRDLK  N+LLD +D   +ADFGL+RF     D TAETGTYR +   V  H+
Sbjct:  379 LLKFALDVCQGMSYLHQKGIIHRDLKSGNLLLDKNDVVKVADFGLARFQDGGGDMTAETGTYRWMAPEVINHQ 451          
BLAST of mRNA_E-fasciculatus_F_contig14026.2952.1 vs. uniprot
Match: A0A835YYG5_9STRA (Putative serine/threonine protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYG5_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 9.340e-14
Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = 1
Query:   73 LLRIVKDVVNGMLYLHELGVMHRDLKPDNILLDADDRAVIADFGLSRFCHPTNDHTAETGTYRCVCTAVHFHK 291
            +LR+   +  GM YLH  G++HRDLK  NILLDA     I DFGLS F HP  D TAETGTYR +   V  H+
Sbjct:  260 VLRLAGQIAEGMRYLHAEGIVHRDLKTANILLDAQGDVRIVDFGLSCFNHPGADLTAETGTYRYMAPEVIRHE 332          
BLAST of mRNA_E-fasciculatus_F_contig14026.2952.1 vs. uniprot
Match: A0A0M0KDX5_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0KDX5_9EUKA)

HSP 1 Score: 75.1 bits (183), Expect = 1.040e-13
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   46 GREPLRSTDLLRIVKDVVNGMLYLHELGVMHRDLKPDNILLDADDRAVIADFGLS-RFCHPTNDHTAETGTYRCVCTAVHFHK 291
            G  PL +  L RIVK+V +G+ YLH  GVMHRD+K  N+LLD    A + DFG+S RF    +++TAETGTYR +   V  HK
Sbjct:  384 GSGPLDAPLLARIVKEVASGVAYLHYNGVMHRDIKTANVLLDESGHAKVTDFGISTRFGR--SEYTAETGTYRQMAPEVILHK 464          
BLAST of mRNA_E-fasciculatus_F_contig14026.2952.1 vs. uniprot
Match: A0A804N6T5_MAIZE (Uncharacterized protein n=2 Tax=Andropogoneae TaxID=147429 RepID=A0A804N6T5_MAIZE)

HSP 1 Score: 74.7 bits (182), Expect = 1.380e-13
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   58 LRSTDLLRIVKDVVNGMLYLHELGVMHRDLKPDNILLDADDRAVIADFGLSRFCHPTNDHTAETGTYRCVCTAVHFHK 291
            L  T LL+   DV  GM YLHE G++HRDLK  N+L+D D    +ADFG++RF       TAETGTYR +   V  H+
Sbjct:  345 LNLTTLLKFAVDVCRGMCYLHERGIIHRDLKTANLLMDNDHAVKVADFGVARFQDQGGIMTAETGTYRWMAPEVINHQ 422          
BLAST of mRNA_E-fasciculatus_F_contig14026.2952.1 vs. uniprot
Match: K3Y6F4_SETIT (Uncharacterized protein n=15 Tax=Panicoideae TaxID=147369 RepID=K3Y6F4_SETIT)

HSP 1 Score: 74.3 bits (181), Expect = 1.910e-13
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   58 LRSTDLLRIVKDVVNGMLYLHELGVMHRDLKPDNILLDADDRAVIADFGLSRFCHPTNDHTAETGTYRCVCTAVHFHK 291
            L  T LL+   DV  GM YLHE G++HRDLK  N+L+D D    +ADFG++RF       TAETGTYR +   V  H+
Sbjct:  352 LNLTTLLKFAVDVCRGMCYLHERGIIHRDLKTANLLMDKDHVVKVADFGVARFQDQGGIMTAETGTYRWMAPEVINHQ 429          
BLAST of mRNA_E-fasciculatus_F_contig14026.2952.1 vs. uniprot
Match: A0A3L6SYF8_PANMI (Serine/threonine-protein kinase STY46-like n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6SYF8_PANMI)

HSP 1 Score: 74.3 bits (181), Expect = 1.950e-13
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 1
Query:   58 LRSTDLLRIVKDVVNGMLYLHELGVMHRDLKPDNILLDADDRAVIADFGLSRFCHPTNDHTAETGTYRCVCTAVHF 285
            L  T LL+   DV  GM YLHE G++HRDLK  N+L+D D    +ADFG++RF       TAETGTYR +   + +
Sbjct:  371 LNPTTLLKFAVDVCRGMCYLHERGIIHRDLKTANLLMDKDHVVKVADFGVARFQDQEGIMTAETGTYRWMAPEIPY 446          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14026.2952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMV5_ECTSI3.750e-4382.47Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
A0A6H5KIL9_9PHAE2.910e-4281.91Protein kinase domain-containing protein n=1 Tax=E... [more]
I2CRD9_NANGC9.190e-2151.11Serine threonine protein kinase (Fragment) n=1 Tax... [more]
B6UD76_MAIZE4.030e-1452.05ATP binding protein n=2 Tax=Zea mays TaxID=4577 Re... [more]
A0A3L6EZG4_MAIZE4.150e-1452.05Serine/threonine-protein kinase STY46 n=2 Tax=Zea ... [more]
A0A835YYG5_9STRA9.340e-1453.42Putative serine/threonine protein kinase n=1 Tax=T... [more]
A0A0M0KDX5_9EUKA1.040e-1350.60Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A804N6T5_MAIZE1.380e-1348.72Uncharacterized protein n=2 Tax=Andropogoneae TaxI... [more]
K3Y6F4_SETIT1.910e-1348.72Uncharacterized protein n=15 Tax=Panicoideae TaxID... [more]
A0A3L6SYF8_PANMI1.950e-1347.37Serine/threonine-protein kinase STY46-like n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14026contigE-fasciculatus_F_contig14026:2421..3450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue2.4e-36
Seed eggNOG ortholog2880.D7FMV5
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionserine/threonine protein kinase
Ec32 orthologEc-09_002640.1
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927894.7796295-CDS-E-fasciculatus_F_contig14026:2420..25881622927894.7796295-CDS-E-fasciculatus_F_contig14026:2420..2588Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14026 2421..2588 -
1695995742.0837626-CDS-E-fasciculatus_F_contig14026:2420..25881695995742.0837626-CDS-E-fasciculatus_F_contig14026:2420..2588Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14026 2421..2588 -
1622927894.7941992-CDS-E-fasciculatus_F_contig14026:3327..34501622927894.7941992-CDS-E-fasciculatus_F_contig14026:3327..3450Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14026 3328..3450 -
1695995742.0972624-CDS-E-fasciculatus_F_contig14026:3327..34501695995742.0972624-CDS-E-fasciculatus_F_contig14026:3327..3450Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14026 3328..3450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14026.2952.1prot_E-fasciculatus_F_contig14026.2952.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14026 2421..3450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14026.2952.1

>prot_E-fasciculatus_F_contig14026.2952.1 ID=prot_E-fasciculatus_F_contig14026.2952.1|Name=mRNA_E-fasciculatus_F_contig14026.2952.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=97bp
GGGGAEREWGSGSCRGREPLRSTDLLRIVKDVVNGMLYLHELGVMHRDLK
PDNILLDADDRAVIADFGLSRFCHPTNDHTAETGTYRCVCTAVHFHK
back to top

mRNA from alignment at E-fasciculatus_F_contig14026:2421..3450-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14026.2952.1 ID=mRNA_E-fasciculatus_F_contig14026.2952.1|Name=mRNA_E-fasciculatus_F_contig14026.2952.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1030bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14026:2421..3450- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTGGTGGTGGTGCCGAGCGAGAATGGGGGTCAGGGAGTTGTCGAGGAAG AGAGCCGTTGAGATCAACGGATCTTTTGAGGATCGTTAAGGACGTGGTGA ACGGCATGCTCTACCTGCACGAGGTGGGTGCTTCTTTTGCAGAAGGAGTG TGGTCTTGAAAACTTGTTTCAGATTTGGTTTGGTGGCAGGTACAGCAGCG GTCGCTATTTTTGCTCCGTGCCTTTTTACCTGCACTCTCGTGCATAGCAG TGTCACACACTTCGGCGATGCGTAGTTCAATTCTTATCGCACCAGGCGTG CAAGAACAATTGAAATCAGCAAAGTTGGCCTTGTGTACCTGAGACTACCA CACTGGAGTACATGTGGTGCCAATCGGGAATAACACCGATGGAACTAGCA CCATCGTGCTGGATTCTACCTTACTATGCGTGCCTCTGTGCTTTTCGGAC GTCGTGGTTTTTTTTGGTTCCTCGACGAGACGAAATTTTGACGAAAGCAA TCGGCATAAAAAGTCGTGACCCCACTGCGGTGTACGCGTTGCGATCCAAG TAGTCTCTGGGGTGTTGCTCTTTTTTTTTCTTTTCTTTTTTTTTATACGA CACAACGAATCCATCTCTGTGGTAGAAAAGAGTCAGAGACAGATTAGCAT TGAATTCATAGCGTCAGCCTTTTTTGTCCGTACGAGTTCCGAATGCCGCG TGTGTTGGAGGGACCTGTCCGTCTTTTTATTTTTATCCGTTCTTCTTTCT TCCCTTCTTTTCTTTCATGTGTGATCCATGAATCCTACCACCTCAGGAAA ACGTTGCACTAATCGTTCGTCCCCAACTACCCCGACCCCATACCCTTCCG CCTGCAAAATAGTTGGGCGTGATGCACCGCGACCTTAAGCCGGACAACAT CCTGCTGGACGCGGACGATCGGGCAGTCATCGCCGACTTTGGACTGAGCC GGTTCTGCCACCCGACAAACGACCACACGGCTGAGACGGGCACCTACAGG TGTGTATGTACAGCAGTACACTTTCACAAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14026:2421..3450-

>mRNA_E-fasciculatus_F_contig14026.2952.1 ID=mRNA_E-fasciculatus_F_contig14026.2952.1|Name=mRNA_E-fasciculatus_F_contig14026.2952.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=582bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14026:2421..3450- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTGGTGGTGGTGCCGAGCGAGAATGGGGGTCAGGGAGTTGTCGAGGAAG
AGAGCCGTTGAGATCAACGGATCTTTTGAGGATCGTTAAGGACGTGGTGA
ACGGCATGCTCTACCTGCACGAGGGTGGTGGTGGTGCCGAGCGAGAATGG
GGGTCAGGGAGTTGTCGAGGAAGAGAGCCGTTGAGATCAACGGATCTTTT
GAGGATCGTTAAGGACGTGGTGAACGGCATGCTCTACCTGCACGAGTTGG
GCGTGATGCACCGCGACCTTAAGCCGGACAACATCCTGCTGGACGCGGAC
GATCGGGCAGTCATCGCCGACTTTGGACTGAGCCGGTTCTGCCACCCGAC
AAACGACCACACGGCTGAGACGGGCACCTACAGGTGTGTATGTACAGCAG
TACACTTTCACAAGTTGGGCGTGATGCACCGCGACCTTAAGCCGGACAAC
ATCCTGCTGGACGCGGACGATCGGGCAGTCATCGCCGACTTTGGACTGAG
CCGGTTCTGCCACCCGACAAACGACCACACGGCTGAGACGGGCACCTACA
GGTGTGTATGTACAGCAGTACACTTTCACAAG
back to top