mRNA_E-fasciculatus_F_contig14021.2949.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14021.2949.1
Unique NamemRNA_E-fasciculatus_F_contig14021.2949.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14021.2949.1 vs. uniprot
Match: D7FWD1_ECTSI (Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWD1_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 8.030e-77
Identity = 125/127 (98.43%), Postives = 126/127 (99.21%), Query Frame = 1 
Query:    1 NAVKRWPISAEAAIMNPTQKIVALRAQGQLQIFNLEAKSRLKSHTISEPIVFWRWFDATTIALVTASAVFHWSMEGDSGPQKIFNRDAKLEGCQVIGYNVSADGKWCLAVGIYQASPGVIAGTMQLY 381
            NAVKRWPISAEAAIMNPTQKIVALRAQGQLQIFNLEAKSRLKSHTISEPIVFW+WFDATTIALVTASAVFHWSM GDSGPQKIFNRDAKLEGCQVIGYNVSADGKWCLAVGIYQASPGVIAGTMQLY
Sbjct:   44 NAVKRWPISAEAAIMNPTQKIVALRAQGQLQIFNLEAKSRLKSHTISEPIVFWKWFDATTIALVTASAVFHWSMGGDSGPQKIFNRDAKLEGCQVIGYNVSADGKWCLAVGIYQASPGVIAGTMQLY 170
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14021.2949.1 vs. uniprot
Match: A0A835YZH1_9STRA (Clathrin heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH1_9STRA)

HSP 1 Score: 192 bits (488), Expect = 3.350e-54
Identity = 91/127 (71.65%), Postives = 106/127 (83.46%), Query Frame = 1 
Query:    1 NAVKRWPISAEAAIMNPTQKIVALRAQGQLQIFNLEAKSRLKSHTISEPIVFWRWFDATTIALVTASAVFHWSMEGDSGPQKIFNRDAKLEGCQVIGYNVSADGKWCLAVGIYQASPGVIAGTMQLY 381
            N V R PISAEAAIMNP  KIVALRA GQLQIFNL+ K+R+K+HTIS+PI +WRW D +TIALV+A+AV+HWSMEG   P K+F+RD KLEG Q+IGY+VS D KWCL  GI QA+PGVIAGTMQLY
Sbjct:   56 NTVTRRPISAEAAIMNPVSKIVALRAAGQLQIFNLDTKARVKAHTISDPIQYWRWLDPSTIALVSATAVYHWSMEGADPPAKVFDRDGKLEGSQIIGYSVSMDRKWCLVTGISQAAPGVIAGTMQLY 182
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14021.2949.1 vs. uniprot
Match: A0A7S2V2C2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2C2_9STRA)

HSP 1 Score: 184 bits (468), Expect = 1.610e-51
Identity = 89/128 (69.53%), Postives = 104/128 (81.25%), Query Frame = 1 
Query:    1 NAVKRWPISAEAAIMNPTQKIVALRAQGQLQIFNLEAKSRLKSHTISEPIVFWRWFDATTIALVTASAVFHWSMEGDSGPQKIFNRDAKLE-GCQVIGYNVSADGKWCLAVGIYQASPGVIAGTMQLY 381
            NAV R PISAEAAIMNP  KI+ALRAQG LQIFNLEA+S++KSH +++ +VFWRW D  T+A+VTA+AVFHWS+EGDSGP K+F+R A L  G Q+I Y VSADGKWCL VGI Q   GVI GTMQLY
Sbjct:   51 NAVTRKPISAEAAIMNPVSKIIALRAQGTLQIFNLEARSKMKSHALTDAVVFWRWVDTKTVAVVTATAVFHWSIEGDSGPVKVFDRHASLSTGNQIINYKVSADGKWCLLVGISQHETGVIVGTMQLY 178
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14021.2949.1 vs. uniprot
Match: A0A7S4DKD8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKD8_HETAK)

HSP 1 Score: 162 bits (409), Expect = 6.340e-46
Identity = 77/128 (60.16%), Postives = 95/128 (74.22%), Query Frame = 1 
Query:    1 NAVKRWPISAEAAIMNPTQKIVALRAQGQLQIFNLEAKSRLKSHTISEPIVFWRWFDATTIALVTASAVFHWSMEGDSGPQKIFNRDAKLE-GCQVIGYNVSADGKWCLAVGIYQASPGVIAGTMQLY 381
            N V R PISAEAAIMNPT KI+ALRA  Q+Q+FNLE++S++K+H ++E  VFWRW   T I LVT +AV+HW +EGD+ P K+F+R A L  G Q+I Y VS DGKWCL +GI Q   G I GTMQLY
Sbjct:   60 NQVTRRPISAEAAIMNPTSKIIALRAGTQVQMFNLESRSKIKAHAMTETCVFWRWISPTVIGLVTPTAVYHWPLEGDATPAKVFDRHASLAAGSQIINYKVSPDGKWCLLIGISQGEGGTIQGTMQLY 187
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14021.2949.1 vs. uniprot
Match: A0A7S1XLU7_9STRA (Clathrin heavy chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLU7_9STRA)

HSP 1 Score: 167 bits (422), Expect = 2.590e-45
Identity = 81/128 (63.28%), Postives = 102/128 (79.69%), Query Frame = 1 
Query:    1 NAVKRWPISAEAAIMNPTQKIVALRAQGQLQIFNLEAKSRLKSHTISEPIVFWRWFDATTIALVTASAVFHWSMEGDSGPQKIFNRDAKL-EGCQVIGYNVSADGKWCLAVGIYQASPGVIAGTMQLY 381
            N V R PISAEAAIMNP  K++ALR+Q QLQIFNLE ++++K+H ++E + FWRW +  TIA+VT +AV+HWS+EGD+ P K+F+R A+L EG QVIGY VSADGKWCL VGI Q + G I GTMQLY
Sbjct:   56 NEVTRRPISAEAAIMNPVAKVIALRSQSQLQIFNLELRTKMKAHAMTEAVKFWRWVNNNTIAIVTPTAVYHWSLEGDASPTKVFDRHAQLAEGKQVIGYEVSADGKWCLLVGISQGAGG-IEGTMQLY 182
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14021.2949.1 vs. uniprot
Match: A0A2P4YLB1_9STRA (Clathrin heavy chain (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YLB1_9STRA)

HSP 1 Score: 165 bits (418), Expect = 3.850e-45
Identity = 80/128 (62.50%), Postives = 97/128 (75.78%), Query Frame = 1 
Query:    1 NAVKRWPISAEAAIMNPTQKIVALRAQGQLQIFNLEAKSRLKSHTISEPIVFWRWFDATTIALVTASAVFHWSMEGDSGPQKIFNRDAKLE-GCQVIGYNVSADGKWCLAVGIYQASPGVIAGTMQLY 381
            N V+R PI+AEAAIMNP  K++ALRA+ QLQIFN+E ++++KSH ++E +VFWRW    TIALVTASAVFHWS+EGDS P KIF+R A L  G Q+I Y  SAD +W L VGI Q   G IAG MQLY
Sbjct:   59 NTVQRRPINAEAAIMNPVSKVIALRAENQLQIFNMELRAKMKSHLMNEAVVFWRWISVNTIALVTASAVFHWSIEGDSPPTKIFDRHANLSSGTQIISYEASADNQWMLLVGISQGEGGRIAGNMQLY 186
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14021.2949.1 vs. uniprot
Match: B4R5I8_DROSI (GD15774 n=1 Tax=Drosophila simulans TaxID=7240 RepID=B4R5I8_DROSI)

HSP 1 Score: 154 bits (390), Expect = 3.620e-44
Identity = 71/123 (57.72%), Postives = 94/123 (76.42%), Query Frame = 1 
Query:   13 RWPISAEAAIMNPTQKIVALRAQGQLQIFNLEAKSRLKSHTISEPIVFWRWFDATTIALVTASAVFHWSMEGDSGPQKIFNRDAKLEGCQVIGYNVSADGKWCLAVGIYQASPGVIAGTMQLY 381
            R PISA++AIMNP  K++AL+AQ  LQIFN+E KS++K+HT++E +VFW+W    T+ALVT ++VFHWSMEGDS PQK+F+R + L GCQ+I Y  +A  +W L VGI  A P  +AG MQLY
Sbjct:   63 RRPISADSAIMNPASKVIALKAQKTLQIFNIEMKSKMKAHTMNEDVVFWKWISLNTLALVTETSVFHWSMEGDSMPQKMFDRHSSLNGCQIINYRCNASQQWLLLVGI-SALPSRVAGAMQLY 184
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14021.2949.1 vs. uniprot
Match: A0A2D4BEN2_PYTIN (Clathrin heavy chain n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BEN2_PYTIN)

HSP 1 Score: 162 bits (411), Expect = 7.910e-44
Identity = 76/128 (59.38%), Postives = 96/128 (75.00%), Query Frame = 1 
Query:    1 NAVKRWPISAEAAIMNPTQKIVALRAQGQLQIFNLEAKSRLKSHTISEPIVFWRWFDATTIALVTASAVFHWSMEGDSGPQKIFNRDAKL-EGCQVIGYNVSADGKWCLAVGIYQASPGVIAGTMQLY 381
            N V+R PI+AEAAIMNP  K++ALR++ QLQIFN+E ++++KSH ++EP+VFWRW    TIALVT SAV+HWS++GDS P K+F+R A L  G Q+I Y  S DGKW L VGI Q   G I G MQLY
Sbjct:  490 NQVQRRPINAEAAIMNPVSKVIALRSENQLQIFNMELRAKMKSHLMTEPVVFWRWISVNTIALVTGSAVYHWSLDGDSAPVKMFDRHASLGAGTQIISYEASPDGKWLLLVGIAQGDGGRIVGNMQLY 617
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14021.2949.1 vs. uniprot
Match: A0A8H7BV78_9FUNG (Clathrin heavy chain n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BV78_9FUNG)

HSP 1 Score: 162 bits (410), Expect = 1.070e-43
Identity = 75/127 (59.06%), Postives = 99/127 (77.95%), Query Frame = 1 
Query:    1 NAVKRWPISAEAAIMNPTQKIVALRAQGQLQIFNLEAKSRLKSHTISEPIVFWRWFDATTIALVTASAVFHWSMEGDSGPQKIFNRDAKLEGCQVIGYNVSADGKWCLAVGIYQASPGVIAGTMQLY 381
            N + R PISA++AIM+PT K++AL+AQ QLQ+FNLE K++LKSHT+ E +VFWRW +  TIALVT +AV+HWS+EGDS P KIF+R A L GCQ+I Y VS++ KW + +GI  A  G + G+MQLY
Sbjct:   59 NEITRRPISADSAIMHPTTKVMALKAQSQLQVFNLETKTKLKSHTMHEEVVFWRWINLKTIALVTGTAVYHWSIEGDSAPIKIFDRHASLTGCQIINYRVSSNDKWMVLIGI-SAQQGRVVGSMQLY 184
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14021.2949.1 vs. uniprot
Match: A0A024GSW4_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GSW4_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.140e-43
Identity = 74/128 (57.81%), Postives = 95/128 (74.22%), Query Frame = 1 
Query:    1 NAVKRWPISAEAAIMNPTQKIVALRAQGQLQIFNLEAKSRLKSHTISEPIVFWRWFDATTIALVTASAVFHWSMEGDSGPQKIFNRDAKL-EGCQVIGYNVSADGKWCLAVGIYQASPGVIAGTMQLY 381
            N+V+R PI+AEAAIMNP  K++ALR++ QLQIFN+E ++++KS  ++E +VFWRW    +IALVTA+AVFHWS+EGDS P KIF+R A L  G Q+I Y  S D +W L VGI Q   G I G MQLY
Sbjct:   28 NSVQRRPINAEAAIMNPVSKVIALRSENQLQIFNMELRAKMKSFLMTEAVVFWRWISVNSIALVTATAVFHWSLEGDSPPVKIFDRHANLGAGTQIISYEASQDNQWMLLVGISQGEGGRIVGNMQLY 155
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14021.2949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWD1_ECTSI8.030e-7798.43Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YZH1_9STRA3.350e-5471.65Clathrin heavy chain n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2V2C2_9STRA1.610e-5169.53Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S4DKD8_HETAK6.340e-4660.16Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1XLU7_9STRA2.590e-4563.28Clathrin heavy chain n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2P4YLB1_9STRA3.850e-4562.50Clathrin heavy chain (Fragment) n=1 Tax=Phytophtho... [more]
B4R5I8_DROSI3.620e-4457.72GD15774 n=1 Tax=Drosophila simulans TaxID=7240 Rep... [more]
A0A2D4BEN2_PYTIN7.910e-4459.38Clathrin heavy chain n=2 Tax=Pythium TaxID=4797 Re... [more]
A0A8H7BV78_9FUNG1.070e-4359.06Clathrin heavy chain n=1 Tax=Apophysomyces ossifor... [more]
A0A024GSW4_9STRA1.140e-4357.81Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14021contigE-fasciculatus_F_contig14021:1..1463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score257.3
Seed ortholog evalue3.9e-66
Seed eggNOG ortholog2880.D7FWD1
Preferred nameCLTC
KEGG koko:K04646
KEGG Pathwayko04142,ko04144,ko04721,ko04961,ko05016,ko05100,map04142,map04144,map04721,map04961,map05016,map05100
GOsGO:0000003,GO:0000041,GO:0000139,GO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000323,GO:0000578,GO:0000910,GO:0000912,GO:0000915,GO:0001505,GO:0001654,GO:0001745,GO:0002020,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005739,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005802,GO:0005819,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0005886,GO:0005905,GO:0005911,GO:0005938,GO:0006109,GO:0006403,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006836,GO:0006886,GO:0006887,GO:0006892,GO:0006895,GO:0006897,GO:0006898,GO:0006907,GO:0006950,GO:0006970,GO:0006996,GO:0007010,GO:0007017,GO:0007028,GO:0007030,GO:0007033,GO:0007034,GO:0007041,GO:0007049,GO:0007051,GO:0007052,GO:0007154,GO:0007163,GO:0007165,GO:0007166,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007315,GO:0007316,GO:0007346,GO:0007349,GO:0007350,GO:0007351,GO:0007389,GO:0007423,GO:0007424,GO:0007568,GO:0007591,GO:0007594,GO:0008022,GO:0008092,GO:0008103,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008298,GO:0008340,GO:0008358,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009267,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009798,GO:0009880,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009898,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0009994,GO:0010008,GO:0010118,GO:0010256,GO:0010259,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010623,GO:0010646,GO:0010647,GO:0010827,GO:0010828,GO:0012501,GO:0012505,GO:0012506,GO:0015031,GO:0015629,GO:0015630,GO:0015682,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016055,GO:0016079,GO:0016192,GO:0016197,GO:0016324,GO:0016325,GO:0016482,GO:0017156,GO:0019094,GO:0019222,GO:0019538,GO:0019882,GO:0019884,GO:0019886,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0022608,GO:0022609,GO:0022610,GO:0023051,GO:0023052,GO:0023056,GO:0023061,GO:0030001,GO:0030029,GO:0030036,GO:0030054,GO:0030100,GO:0030117,GO:0030118,GO:0030120,GO:0030125,GO:0030135,GO:0030136,GO:0030139,GO:0030141,GO:0030154,GO:0030163,GO:0030198,GO:0030276,GO:0030315,GO:0030424,GO:0030435,GO:0030479,GO:0030506,GO:0030587,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030951,GO:0030952,GO:0031032,GO:0031072,GO:0031090,GO:0031152,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031523,GO:0031623,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0031984,GO:0032051,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032588,GO:0032799,GO:0032801,GO:0032802,GO:0032879,GO:0032880,GO:0032881,GO:0032885,GO:0032886,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033218,GO:0033227,GO:0033267,GO:0033363,GO:0033554,GO:0033572,GO:0034381,GO:0034383,GO:0034613,GO:0034622,GO:0034762,GO:0034764,GO:0035002,GO:0035150,GO:0035151,GO:0035152,GO:0035159,GO:0035282,GO:0035567,GO:0036019,GO:0036020,GO:0040008,GO:0042044,GO:0042045,GO:0042147,GO:0042277,GO:0042303,GO:0042383,GO:0042594,GO:0042802,GO:0042886,GO:0042995,GO:0043005,GO:0043062,GO:0043112,GO:0043170,GO:0043195,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043255,GO:0043679,GO:0043933,GO:0043934,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044430,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044448,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044764,GO:0044837,GO:0045055,GO:0045056,GO:0045176,GO:0045177,GO:0045184,GO:0045202,GO:0045334,GO:0045451,GO:0045747,GO:0045807,GO:0045912,GO:0046324,GO:0046326,GO:0046666,GO:0046667,GO:0046903,GO:0046907,GO:0048002,GO:0048193,GO:0048232,GO:0048259,GO:0048260,GO:0048268,GO:0048285,GO:0048468,GO:0048469,GO:0048471,GO:0048475,GO:0048477,GO:0048489,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048592,GO:0048599,GO:0048609,GO:0048646,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050750,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051179,GO:0051225,GO:0051234,GO:0051236,GO:0051239,GO:0051301,GO:0051493,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0055044,GO:0060071,GO:0060236,GO:0060255,GO:0060341,GO:0060541,GO:0060627,GO:0060810,GO:0060811,GO:0061024,GO:0061640,GO:0061645,GO:0062012,GO:0062014,GO:0065003,GO:0065007,GO:0065008,GO:0070325,GO:0070507,GO:0070633,GO:0070727,GO:0070925,GO:0071439,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072512,GO:0072583,GO:0072686,GO:0080090,GO:0090066,GO:0090175,GO:0090224,GO:0090307,GO:0090596,GO:0090702,GO:0097006,GO:0097159,GO:0097443,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0097718,GO:0098552,GO:0098562,GO:0098588,GO:0098590,GO:0098630,GO:0098657,GO:0098743,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098852,GO:0098916,GO:0099003,GO:0099080,GO:0099081,GO:0099120,GO:0099503,GO:0099504,GO:0099512,GO:0099513,GO:0099536,GO:0099537,GO:0099568,GO:0099643,GO:0120025,GO:0120038,GO:0140014,GO:0150034,GO:0198738,GO:1900125,GO:1900126,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902850,GO:1903047,GO:1903076,GO:1903077,GO:1903827,GO:1903828,GO:1904375,GO:1904376,GO:1905114,GO:1905330,GO:1905475,GO:1905476,GO:1990381,GO:1990498,GO:1990763,GO:2000026,GO:2000027,GO:2000369,GO:2000370
EggNOG free text desc.clathrin light chain binding
EggNOG OGsKOG0985@1,KOG0985@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size399
Cds size399
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14021.2949.1prot_E-fasciculatus_F_contig14021.2949.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14021 1..1463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927894.4914644-CDS-E-fasciculatus_F_contig14021:0..761622927894.4914644-CDS-E-fasciculatus_F_contig14021:0..76Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14021 1..76 +
1695995741.9723997-CDS-E-fasciculatus_F_contig14021:0..761695995741.9723997-CDS-E-fasciculatus_F_contig14021:0..76Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14021 1..76 +
1622927894.5305884-CDS-E-fasciculatus_F_contig14021:878..10841622927894.5305884-CDS-E-fasciculatus_F_contig14021:878..1084Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14021 879..1084 +
1695995741.984653-CDS-E-fasciculatus_F_contig14021:878..10841695995741.984653-CDS-E-fasciculatus_F_contig14021:878..1084Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14021 879..1084 +
1622927894.555032-CDS-E-fasciculatus_F_contig14021:1346..14631622927894.555032-CDS-E-fasciculatus_F_contig14021:1346..1463Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14021 1347..1463 +
1695995741.9947143-CDS-E-fasciculatus_F_contig14021:1346..14631695995741.9947143-CDS-E-fasciculatus_F_contig14021:1346..1463Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14021 1347..1463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14021.2949.1

>prot_E-fasciculatus_F_contig14021.2949.1 ID=prot_E-fasciculatus_F_contig14021.2949.1|Name=mRNA_E-fasciculatus_F_contig14021.2949.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=133bp
NAVKRWPISAEAAIMNPTQKIVALRAQGQLQIFNLEAKSRLKSHTISEPI
VFWRWFDATTIALVTASAVFHWSMEGDSGPQKIFNRDAKLEGCQVIGYNV
SADGKWCLAVGIYQASPGVIAGTMQLYRFVDQ*
back to top

mRNA from alignment at E-fasciculatus_F_contig14021:1..1463+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14021.2949.1 ID=mRNA_E-fasciculatus_F_contig14021.2949.1|Name=mRNA_E-fasciculatus_F_contig14021.2949.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1463bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14021:1..1463+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AACGCGGTGAAGCGGTGGCCCATCTCCGCCGAGGCTGCCATCATGAACCC
CACCCAGAAGATCGTGGCGCTGAGGGGTGAGAGAAAGACAGCAGCAGTGT
AGTCTCACGCAGGTTTCTCGTTGAGTATACGAACATACTGGATATAGCAT
AGAATCGGTTAGGGTTTGGGTTTTTTATGTAAGAAAACATACTGGATAAA
GTATGGAATCGGCTAGGTTAGGGTTGGGTCTTCGTGCCCTCTGCCTGATC
TTTTTTCACGAATACACTTCTTGTGCTTTTTTTGCGTGGGCAATCCGTGA
GAGCAGTACCGCTTTTTTTATTTCCATCACTTTGGGTTCAGCCCTCGCAG
GCAGCACTTGTGCCGCTTGGGAGCTCCAAGCCGTGGTGGTAGCACAGAAG
GGCTCTCTTCCCCCTACGCGGGTTTTTATTTTTAGCAAACATGAAGGAAA
AAAGTATGGAATCGGTGGATTTTGGGTAGCCCATCTCCGCCGAGGGTGCT
CTGATGAACCCTTGGCGCTGGGATGTGAGAGAGACTAACTAACACGCGGT
GGGGCTTTTTCCCTCCAAGCGGCGGCAGAATTGTAACGTGTGCGTGCGCG
GTTGCTGCTGTTCGATACGGGCAGGAAGCTGATTCGAAATCGGCGACCAA
TTTCTGGTCGAGCCGCCTGCCTGCCTTCGTACCCCGCCCCTTGCCTATCT
CTGCCCAACGAAACACAACTCAAACCCCCCTCCCGTTTTCTCTGTCCATC
CAAAAGACAACCCAATCCCCCTTTGCCCTCTCTGTCCAACGACCCAATCC
CCCCTGCCCCTCTCTGTCTAACCAAAACACAACTCAAACCCCCTTTCGTT
TTCTCTCCCCAATAAAAAACATATACAGCCCAAGGCCAGCTCCAGATCTT
TAACCTGGAGGCGAAGAGCAGGCTGAAGAGCCACACGATCTCGGAGCCGA
TCGTGTTCTGGAGGTGGTTCGACGCCACCACGATCGCTCTGGTCACCGCC
TCCGCTGTCTTCCACTGGTCCATGGAGGGCGACTCCGGCCCGCAGAAGAT
CTTCAACCGCGACGCCAAGCTCGAGGGGTGCCAGGTGCGTGGTGAACTTT
TGGTGGTTCGGTGTAATGGAAAATAAGGAAAATAGGGAGTATTTGAAGTA
TTCATTAGACCGCGCCAACCGGCTGACCAATGAAAAGACGTCACTTCTCC
GTGCTGCCAGTAACGGGTTTTTTTTATGTTTTTTGGGATGTCGTTGTTTT
TTCGGCCAATGAACAGATGTCACTTTTCAGTGCGGCTATAGTAATGACGG
ATTTTTTATGTGTGTTTTGGGATATCGATGTTGTTTTTTTTGGCAGGTGA
TCGGCTACAACGTGAGCGCGGATGGAAAGTGGTGCCTCGCGGTGGGTATC
TACCAGGCGTCCCCCGGAGTCATCGCCGGAACCATGCAGCTCTACAGGTT
CGTGGACCAGTGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14021:1..1463+

>mRNA_E-fasciculatus_F_contig14021.2949.1 ID=mRNA_E-fasciculatus_F_contig14021.2949.1|Name=mRNA_E-fasciculatus_F_contig14021.2949.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=798bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14021:1..1463+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AACGCGGTGAAGCGGTGGCCCATCTCCGCCGAGGCTGCCATCATGAACCC
CACCCAGAAGATCGTGGCGCTGAGGGAACGCGGTGAAGCGGTGGCCCATC
TCCGCCGAGGCTGCCATCATGAACCCCACCCAGAAGATCGTGGCGCTGAG
GGCCCAAGGCCAGCTCCAGATCTTTAACCTGGAGGCGAAGAGCAGGCTGA
AGAGCCACACGATCTCGGAGCCGATCGTGTTCTGGAGGTGGTTCGACGCC
ACCACGATCGCTCTGGTCACCGCCTCCGCTGTCTTCCACTGGTCCATGGA
GGGCGACTCCGGCCCGCAGAAGATCTTCAACCGCGACGCCAAGCTCGAGG
GGTGCCAGCCCAAGGCCAGCTCCAGATCTTTAACCTGGAGGCGAAGAGCA
GGCTGAAGAGCCACACGATCTCGGAGCCGATCGTGTTCTGGAGGTGGTTC
GACGCCACCACGATCGCTCTGGTCACCGCCTCCGCTGTCTTCCACTGGTC
CATGGAGGGCGACTCCGGCCCGCAGAAGATCTTCAACCGCGACGCCAAGC
TCGAGGGGTGCCAGGTGATCGGCTACAACGTGAGCGCGGATGGAAAGTGG
TGCCTCGCGGTGGGTATCTACCAGGCGTCCCCCGGAGTCATCGCCGGAAC
CATGCAGCTCTACAGGTTCGTGGACCAGTGAGTGATCGGCTACAACGTGA
GCGCGGATGGAAAGTGGTGCCTCGCGGTGGGTATCTACCAGGCGTCCCCC
GGAGTCATCGCCGGAACCATGCAGCTCTACAGGTTCGTGGACCAGTGA
back to top