mRNA_E-fasciculatus_F_contig14018.2946.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14018.2946.1
Unique NamemRNA_E-fasciculatus_F_contig14018.2946.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14018.2946.1 vs. uniprot
Match: A0A6H5KVA0_9PHAE (Formate--tetrahydrofolate ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVA0_9PHAE)

HSP 1 Score: 317 bits (813), Expect = 1.210e-102
Identity = 163/181 (90.06%), Postives = 170/181 (93.92%), Query Frame = 1 
Query:    1 PPXXXXXAVLSLGQEENLDLLRRGCANLAVHITNALKYGVKVVVGVNVFSTDTQAEIDLVRELALEAGAFSAVKSSHWAEGGAGAVQLAEAVMEACAATRADPSTPFRFLYPSEASIKDKMDTVCREMYRAASVEWSPEAEEKVAIYEKAGYGKLPICVAKTQYSLSTDPSAKGAPSGHTV 543
            PP      + ++ +EENLDLLRRGCANLAVHITNALKYGVKVVVGVNVFSTDT AEIDLVRELALEAGAFSAVKSSHWAEGGAGAVQLAEAVM ACA+TRADPS PFRFLYPSEASIK+KM+TVCREMYRAASVEWSPEAEEKVAIYEKAGYGKLPICVAKTQYSLSTDPSAKGAPSGHTV
Sbjct:  416 PPVKAGTPLANVYKEENLDLLRRGCANLAVHITNALKYGVKVVVGVNVFSTDTPAEIDLVRELALEAGAFSAVKSSHWAEGGAGAVQLAEAVMGACASTRADPSKPFRFLYPSEASIKEKMNTVCREMYRAASVEWSPEAEEKVAIYEKAGYGKLPICVAKTQYSLSTDPSAKGAPSGHTV 596
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BLAST of mRNA_E-fasciculatus_F_contig14018.2946.1 vs. uniprot
Match: D0RMJ3_PHYIT (Formate--tetrahydrofolate ligase n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0RMJ3_PHYIT)

HSP 1 Score: 192 bits (488), Expect = 1.540e-57
Identity = 95/167 (56.89%), Postives = 126/167 (75.45%), Query Frame = 1 
Query:   43 EENLDLLRRGCANLAVHITNALKYGVKVVVGVNVFSTDTQAEIDLVRELALEAGAFSAVKSSHWAEGGAGAVQLAEAVMEACAATRADPSTPFRFLYPSEASIKDKMDTVCREMYRAASVEWSPEAEEKVAIYEKAGYGKLPICVAKTQYSLSTDPSAKGAPSGHTV 543
            +ENLD+L  GCAN+  HI NALK+GV VVV VNVF+TD+  E++LV++ ALEAGA +AV+S+HW+EGG GA  L  AV+ +C   RA  S PF+FLYP E SI +K + +C+E+Y A  VE+S EA++K+A+Y + GYGKLP+C AKT  SLSTDP  KG P+G +V
Sbjct:  111 DENLDMLENGCANMQHHIRNALKFGVAVVVAVNVFATDSPREVELVKQKALEAGATAAVESTHWSEGGKGAKNLGRAVVSSCEKMRAQGS-PFKFLYPLEFSIPEKFEVICKEIYGADGVEFSEEAKKKLAVYSQRGYGKLPVCCAKTHLSLSTDPKPKGVPTGFSV 276
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BLAST of mRNA_E-fasciculatus_F_contig14018.2946.1 vs. uniprot
Match: A0A350G2B8_9CHLR (Formate--tetrahydrofolate ligase (Fragment) n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A350G2B8_9CHLR)

HSP 1 Score: 188 bits (477), Expect = 2.630e-57
Identity = 98/167 (58.68%), Postives = 124/167 (74.25%), Query Frame = 1 
Query:   43 EENLDLLRRGCANLAVHITNALKYGVKVVVGVNVFSTDTQAEIDLVRELALEAGAFSAVKSSHWAEGGAGAVQLAEAVMEACAATRADPSTPFRFLYPSEASIKDKMDTVCREMYRAASVEWSPEAEEKVAIYEKAGYGKLPICVAKTQYSLSTDPSAKGAPSGHTV 543
            EENLDLLR G  NL  H+ NALKYGV VVV VN F+TDTQAE++LVR+ AL+ GA  AV S+HWA+GG GA  LAEAV++A     A+  + F+FLYP E SIKDK++T+ RE+YRA  V++SP+AEE++  Y + G+ KL IC+AKT  S STD S KGAP+G  V
Sbjct:    3 EENLDLLRAGLPNLQRHVENALKYGVNVVVAVNAFATDTQAEVELVRDAALKMGAMDAVVSTHWADGGKGAKALAEAVVKA-----AEKPSKFKFLYPLEMSIKDKIETIAREIYRADGVDYSPQAEEQIQRYNRLGFDKLTICMAKTHLSFSTDASLKGAPTGFRV 164
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BLAST of mRNA_E-fasciculatus_F_contig14018.2946.1 vs. uniprot
Match: A0A8K1FBV6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBV6_PYTOL)

HSP 1 Score: 198 bits (503), Expect = 7.570e-57
Identity = 98/167 (58.68%), Postives = 131/167 (78.44%), Query Frame = 1 
Query:   43 EENLDLLRRGCANLAVHITNALKYGVKVVVGVNVFSTDTQAEIDLVRELALEAGAFSAVKSSHWAEGGAGAVQLAEAVMEACAATRADPSTPFRFLYPSEASIKDKMDTVCREMYRAASVEWSPEAEEKVAIYEKAGYGKLPICVAKTQYSLSTDPSAKGAPSGHTV 543
            +ENL+LL RGCAN+  HI NALK+GV VVV VNVF++DT+ EI+LV+  ALEAGA +AV+SSHWA+GG GA +L +AV+E+C   RA  S PF+FLYP E +I  K + +C+E+Y AA+V++S +A++K+ IY+  GYG LP+C AKT  SLSTDP+AKG P+G TV
Sbjct:  424 DENLELLERGCANMQHHIRNALKFGVAVVVAVNVFASDTEREIELVKAKALEAGATAAVESSHWADGGKGAAKLGQAVVESCKTMRAQGS-PFKFLYPLEFTIAQKFEAICKEIYGAAAVDFSEQAKKKMEIYQARGYGSLPVCCAKTHLSLSTDPTAKGVPTGFTV 589
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BLAST of mRNA_E-fasciculatus_F_contig14018.2946.1 vs. uniprot
Match: A0A2D4C5S4_PYTIN (Formate--tetrahydrofolate ligase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5S4_PYTIN)

HSP 1 Score: 197 bits (500), Expect = 8.420e-57
Identity = 100/167 (59.88%), Postives = 129/167 (77.25%), Query Frame = 1 
Query:   43 EENLDLLRRGCANLAVHITNALKYGVKVVVGVNVFSTDTQAEIDLVRELALEAGAFSAVKSSHWAEGGAGAVQLAEAVMEACAATRADPSTPFRFLYPSEASIKDKMDTVCREMYRAASVEWSPEAEEKVAIYEKAGYGKLPICVAKTQYSLSTDPSAKGAPSGHTV 543
            +ENL+LL RGCAN+  HI NALK+GV VVV VNVF++DT  EI+LV+  ALEAGA +AV+SSHWA+GG GA +L +AV+++C   R+  S PF+FLYP E SI +K +T+C+E+Y AA VE+S EA++K+ IY   GYG LP+C AKT  SLSTDP AKG P+G TV
Sbjct:  369 DENLELLERGCANMQHHIRNALKFGVAVVVAVNVFASDTAREIELVKAKALEAGATAAVESSHWADGGKGAAKLGQAVVDSCTKMRSLGS-PFKFLYPLEYSIAEKFETICKEIYGAAKVEFSEEAQKKMEIYTARGYGALPVCCAKTHLSLSTDPXAKGVPTGFTV 534
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BLAST of mRNA_E-fasciculatus_F_contig14018.2946.1 vs. uniprot
Match: A0A0N7L4C7_PLAHL (Formate--tetrahydrofolate ligase n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A0N7L4C7_PLAHL)

HSP 1 Score: 197 bits (501), Expect = 9.830e-56
Identity = 97/167 (58.08%), Postives = 130/167 (77.84%), Query Frame = 1 
Query:   43 EENLDLLRRGCANLAVHITNALKYGVKVVVGVNVFSTDTQAEIDLVRELALEAGAFSAVKSSHWAEGGAGAVQLAEAVMEACAATRADPSTPFRFLYPSEASIKDKMDTVCREMYRAASVEWSPEAEEKVAIYEKAGYGKLPICVAKTQYSLSTDPSAKGAPSGHTV 543
            EENL++L RGC N+  HI NALK+GV VVV VNVF+TD+  E+++V++ ALEAGA +AV+S+HWAEGG GA++L +AV+ +C   RA  S PF+FLYP E SI +K + +C+E+Y A SVE+S  A +K+A+Y + GYGKLP+C AKT  SLSTDPSAKG P+G +V
Sbjct:  457 EENLEMLERGCNNMQHHIRNALKFGVAVVVAVNVFATDSPREVEIVKQKALEAGAMAAVESTHWAEGGKGAIKLGQAVVSSCGKMRAQGS-PFKFLYPLELSIAEKFEVICKEIYGADSVEYSEIAMKKLALYSQRGYGKLPVCCAKTHLSLSTDPSAKGVPTGFSV 622
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14018.2946.1 vs. uniprot
Match: A0A5D6YMR0_9STRA (Formate--tetrahydrofolate ligase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YMR0_9STRA)

HSP 1 Score: 194 bits (493), Expect = 1.600e-55
Identity = 99/167 (59.28%), Postives = 127/167 (76.05%), Query Frame = 1 
Query:   43 EENLDLLRRGCANLAVHITNALKYGVKVVVGVNVFSTDTQAEIDLVRELALEAGAFSAVKSSHWAEGGAGAVQLAEAVMEACAATRADPSTPFRFLYPSEASIKDKMDTVCREMYRAASVEWSPEAEEKVAIYEKAGYGKLPICVAKTQYSLSTDPSAKGAPSGHTV 543
            +ENL+L+ RGCAN+  HI NALK+GV VVV VNVF+TDT  E+  V+  ALEAGA +AV+S+HWA GG GA  L  AV+E+CAA RA  S PFRFLYP + SI DK + + +++Y AASVE+S EA++K+A+Y   GYG LP+C AKT  SLSTDP+AKG P+G +V
Sbjct:  405 DENLELVERGCANMQHHIRNALKFGVAVVVAVNVFATDTAREVAAVKAKALEAGATAAVESNHWATGGQGAAALGRAVVESCAAMRAQGS-PFRFLYPLDISIADKFEIIAKQIYGAASVEFSDEAKKKLAVYTARGYGSLPVCCAKTHLSLSTDPTAKGVPTGFSV 570
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BLAST of mRNA_E-fasciculatus_F_contig14018.2946.1 vs. uniprot
Match: A0A2P4X753_9STRA (Formate--tetrahydrofolate ligase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X753_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.790e-55
Identity = 95/167 (56.89%), Postives = 128/167 (76.65%), Query Frame = 1 
Query:   43 EENLDLLRRGCANLAVHITNALKYGVKVVVGVNVFSTDTQAEIDLVRELALEAGAFSAVKSSHWAEGGAGAVQLAEAVMEACAATRADPSTPFRFLYPSEASIKDKMDTVCREMYRAASVEWSPEAEEKVAIYEKAGYGKLPICVAKTQYSLSTDPSAKGAPSGHTV 543
            EENL++L RGCAN+  HI NALK+GV VVV VNVF+TD+  E++LV++ ALEAGA +AV+S+HWAEGG GA  L  AV+ +C   R+  S PF+FLYP E SI +K + +C+E+Y A  VE+S EA++K+ +Y + GYGKLP+C AKT  SLST+P+AKG P+G +V
Sbjct:  297 EENLEMLERGCANMQHHIRNALKFGVAVVVAVNVFATDSPREVELVKQKALEAGATAAVESNHWAEGGKGAKALGHAVVTSCDKMRSQGS-PFKFLYPLELSIAEKFEVICKEIYGADGVEFSEEAKKKLVVYSQRGYGKLPVCCAKTHLSLSTNPAAKGVPTGFSV 462
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BLAST of mRNA_E-fasciculatus_F_contig14018.2946.1 vs. uniprot
Match: A0A2P4X4K6_9STRA (Formate--tetrahydrofolate ligase n=23 Tax=Peronosporaceae TaxID=4777 RepID=A0A2P4X4K6_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.400e-54
Identity = 96/167 (57.49%), Postives = 129/167 (77.25%), Query Frame = 1 
Query:   43 EENLDLLRRGCANLAVHITNALKYGVKVVVGVNVFSTDTQAEIDLVRELALEAGAFSAVKSSHWAEGGAGAVQLAEAVMEACAATRADPSTPFRFLYPSEASIKDKMDTVCREMYRAASVEWSPEAEEKVAIYEKAGYGKLPICVAKTQYSLSTDPSAKGAPSGHTV 543
            EENL++L RGCAN+  HI NALK+GV VVV VNVF+TD+  E++LV++ ALEAGA +AV+S+HWAEGG GA  L  AV+ +C   R+  S PF+FLYP E SI +K + +C+E+Y A  VE+S EA++K+A+Y + GYGKLP+C AKT  SLST+P+AKG P+G +V
Sbjct:  490 EENLEMLERGCANMQHHIRNALKFGVAVVVAVNVFATDSPREVELVKQKALEAGATAAVESNHWAEGGKGAKALGHAVVTSCDKMRSQGS-PFKFLYPLEFSIAEKFEVICKEIYGADGVEFSEEAKKKLAVYSQRGYGKLPVCCAKTHLSLSTNPAAKGVPTGFSV 655
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14018.2946.1 vs. uniprot
Match: A0A7V2LNP6_9CHLR (Formate--tetrahydrofolate ligase n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A7V2LNP6_9CHLR)

HSP 1 Score: 184 bits (466), Expect = 1.490e-54
Identity = 93/167 (55.69%), Postives = 122/167 (73.05%), Query Frame = 1 
Query:   43 EENLDLLRRGCANLAVHITNALKYGVKVVVGVNVFSTDTQAEIDLVRELALEAGAFSAVKSSHWAEGGAGAVQLAEAVMEACAATRADPSTPFRFLYPSEASIKDKMDTVCREMYRAASVEWSPEAEEKVAIYEKAGYGKLPICVAKTQYSLSTDPSAKGAPSGHTV 543
            EENL+LL  GC+NL VHI NA ++G+ VVV +N F  DT AE++LVR+++LEAGA  AV SSHW +GGAG+V L EAVM A     A   + F FLYP + SIK+K +T+ +E+Y  A VE+S EAE+K+A+YE+ G+ KLP+C+AKT  SLS DP+ KGAP G  V
Sbjct:   88 EENLELLEAGCSNLKVHIKNAKRFGIPVVVAINKFKDDTDAEVELVRKISLEAGAEDAVMSSHWMDGGAGSVALGEAVMAA-----ASKPSDFHFLYPLDMSIKEKSETIVKEIYGGAGVEYSEEAEKKIALYERVGFDKLPMCMAKTHLSLSHDPNLKGAPEGFIV 249
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14018.2946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVA0_9PHAE1.210e-10290.06Formate--tetrahydrofolate ligase n=2 Tax=Ectocarpu... [more]
D0RMJ3_PHYIT1.540e-5756.89Formate--tetrahydrofolate ligase n=1 Tax=Phytophth... [more]
A0A350G2B8_9CHLR2.630e-5758.68Formate--tetrahydrofolate ligase (Fragment) n=1 Ta... [more]
A0A8K1FBV6_PYTOL7.570e-5758.68Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C5S4_PYTIN8.420e-5759.88Formate--tetrahydrofolate ligase n=1 Tax=Pythium i... [more]
A0A0N7L4C7_PLAHL9.830e-5658.08Formate--tetrahydrofolate ligase n=3 Tax=Peronospo... [more]
A0A5D6YMR0_9STRA1.600e-5559.28Formate--tetrahydrofolate ligase n=1 Tax=Pythium b... [more]
A0A2P4X753_9STRA1.790e-5556.89Formate--tetrahydrofolate ligase n=1 Tax=Phytophth... [more]
A0A2P4X4K6_9STRA1.400e-5457.49Formate--tetrahydrofolate ligase n=23 Tax=Peronosp... [more]
A0A7V2LNP6_9CHLR1.490e-5455.69Formate--tetrahydrofolate ligase n=2 Tax=Chlorofle... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14018contigE-fasciculatus_F_contig14018:8..3336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score325.9
Seed ortholog evalue1.3e-86
Seed eggNOG ortholog2880.D8LDA9
Preferred nameTHFS
KEGG rclassRC00026,RC00111,RC00202,RC00578
KEGG koko:K00288,ko:K01938
KEGG ReactionR00943,R01220,R01655
KEGG Pathwayko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200
KEGG ModuleM00140,M00141,M00377
GOsGO:0003674,GO:0003824,GO:0004329,GO:0004477,GO:0004488,GO:0005488,GO:0005507,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006144,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009112,GO:0009113,GO:0009256,GO:0009257,GO:0009396,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0016020,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0016874,GO:0016879,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0034641,GO:0042221,GO:0042398,GO:0042440,GO:0042558,GO:0042559,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046148,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0046686,GO:0046872,GO:0046914,GO:0048046,GO:0050896,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.formate-tetrahydrofolate ligase activity
EggNOG OGs2QSVW@2759,COG2759@1
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-01_009540.1
EC1.5.1.5,3.5.4.9,6.3.4.3
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFormate-tetrahydrofolate ligase, FTHFS
Ec32 orthologEc-25_001900.1
Exons5
Model size555
Cds size555
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14018.2946.1prot_E-fasciculatus_F_contig14018.2946.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14018 8..3336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927893.9536405-CDS-E-fasciculatus_F_contig14018:7..1301622927893.9536405-CDS-E-fasciculatus_F_contig14018:7..130Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14018 8..130 +
1695995741.6829216-CDS-E-fasciculatus_F_contig14018:7..1301695995741.6829216-CDS-E-fasciculatus_F_contig14018:7..130Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14018 8..130 +
1622927893.9666572-CDS-E-fasciculatus_F_contig14018:381..4911622927893.9666572-CDS-E-fasciculatus_F_contig14018:381..491Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14018 382..491 +
1695995741.6943188-CDS-E-fasciculatus_F_contig14018:381..4911695995741.6943188-CDS-E-fasciculatus_F_contig14018:381..491Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14018 382..491 +
1622927893.9799676-CDS-E-fasciculatus_F_contig14018:1184..13051622927893.9799676-CDS-E-fasciculatus_F_contig14018:1184..1305Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14018 1185..1305 +
1695995741.705324-CDS-E-fasciculatus_F_contig14018:1184..13051695995741.705324-CDS-E-fasciculatus_F_contig14018:1184..1305Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14018 1185..1305 +
1622927893.9952815-CDS-E-fasciculatus_F_contig14018:1985..20931622927893.9952815-CDS-E-fasciculatus_F_contig14018:1985..2093Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14018 1986..2093 +
1695995741.7147055-CDS-E-fasciculatus_F_contig14018:1985..20931695995741.7147055-CDS-E-fasciculatus_F_contig14018:1985..2093Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14018 1986..2093 +
1622927894.0083346-CDS-E-fasciculatus_F_contig14018:3243..33361622927894.0083346-CDS-E-fasciculatus_F_contig14018:3243..3336Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14018 3244..3336 +
1695995741.7227879-CDS-E-fasciculatus_F_contig14018:3243..33361695995741.7227879-CDS-E-fasciculatus_F_contig14018:3243..3336Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14018 3244..3336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14018.2946.1

>prot_E-fasciculatus_F_contig14018.2946.1 ID=prot_E-fasciculatus_F_contig14018.2946.1|Name=mRNA_E-fasciculatus_F_contig14018.2946.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=185bp
PPPPPPPAVLSLGQEENLDLLRRGCANLAVHITNALKYGVKVVVGVNVFS
TDTQAEIDLVRELALEAGAFSAVKSSHWAEGGAGAVQLAEAVMEACAATR
ADPSTPFRFLYPSEASIKDKMDTVCREMYRAASVEWSPEAEEKVAIYEKA
GYGKLPICVAKTQYSLSTDPSAKGAPSGHTVRGW*
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mRNA from alignment at E-fasciculatus_F_contig14018:8..3336+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14018.2946.1 ID=mRNA_E-fasciculatus_F_contig14018.2946.1|Name=mRNA_E-fasciculatus_F_contig14018.2946.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3329bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14018:8..3336+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCCCCCCCCCGCCGCCTCCCGCCGTGCTCTCCTTGGGTCAGGAGGAAAA
CCTTGACTTGTTGCGGAGAGGGTGTGCCAACCTCGCGGTCCACATCACCA
ACGCTCTCAAGTACGGCGTAAAGGTAATACAAGCGGCCGGTCACGGTCAG
CGGCACTAAATTGGTACACCTGCCTGCCAGAGTTGGTTTCATTGTGGCAC
GATGCTGGGCACCGACACTTAACGCGGGGTACTATAGGAGATGACCTTTG
AAAAACGGGTCACGTCTCCCGTCTATCGAGGACGATTGATCCCCCTTTTT
ACACAATGCCGCTGTTCTACAACCCATCTTTAGGCCTCTCGGCCGGTACC
AATTATTTTGTTTTTGATTCACAGGTGGTAGTGGGCGTCAATGTCTTCTC
AACAGACACTCAGGCGGAGATCGATCTCGTGAGGGAGCTCGCCCTGGAGG
CCGGGGCGTTTTCCGCCGTGAAATCGTCACACTGGTGGGTGAATTGTGTC
TGTTGTCTTTTATATAGGATTGTTGCCTTTGTTTTTCATTTTTTTCGTGC
TTGTCGCGTGTTATGTGGTACTGCTGTGCCGTGTTTCTTGAATTATATTG
GCGTTGTTCAAGGAACGTACGATTAGTCAAACCTCGCGGCGTGTGAATGC
TTCTTTGATGTTGGCATCACGCGACCACCATGTACAAGACCGCTATTACT
GTTTTGCGGGACAAGCACACATACACACCACGCTCGCTCGCCCACGGGGG
GGGAGGGGGGGGGGGGGGGGCGCGCAGGCGGGGGGGGAATGTTTGTGGCT
GGGGGGGGGGGGGGGGGGGGGGGGGGTGCGCGCAGACTGGGAGGGAATGT
ATATGGCTGAGTGGGGTCTGCGTGGAGGGTGTGTGTGTTTTAACCTGCGC
TTCCAAGCAAGAAGCGATGGATGCGCGTGTGTGCTTCGGCCGGTCGCCCA
ACAAAAAAACGCAAGCCTCACGGGGAAACACACGATGGTACAGCAGTATG
CCGTTTGGCTGGCTAAACTGTCTTCAGGGGGGGAGGTACCGACAGGGGGA
ACCGCAGAATGACTGAAAGAAGACTAGAACAGTATTCGATTCAGCCTCCT
CGAGTTGTAGAGAGGTGGTTTGTGCTGCGCTAGTTTGATCGCGACGTATG
CTGTGTGTTTTCGTGTACAACCGCCAGGGCGGAAGGAGGAGCTGGGGCGG
TGCAACTAGCGGAGGCCGTGATGGAAGCGTGCGCGGCTACCCGAGCGGAT
CCTTCGACGCCATTTCGGTTCCTGTACCCGTCGGAAGCATCCATCAAGGT
GGGGAGAACGGATGTACACGTGATGGCGCTCTGTGTACCGTGTTGTCGTT
ACCGTGTTGTTGTTGTAGGGCGTGTGTTGTTGTTGTTGTTGTTGTTGTTG
TCAGGTCCCTTTAGTGAGATCCATGCCCGATTAGACCCCCTGGCTTTGGG
AGAGGGGCAGGTCCCTTTAATGAGATCCATGCCCGATCAGACCTCCTGGC
ATTTGGGAGAGGAACTAGTCCCTTCTCAGTGAGATCCATCCTCGATTGAA
CCGCCTATACAACTACAAGCAGGTTTAAGCAGGTTTCTGCGAGCGACGGG
AAATACTATGGGGAGATAAGAAAAATGCCAAAGAAGAAAAGCAAGCACCG
CAGTAGGCTCGCGGTCCTTTGACAGCCGACCCCCCCCCCACTCCGATATG
TGATGGTTCCCTTTCCATACTTCCCTCGGTCCGTCTCCTGCCCCCTCTCC
TCATTCTCTCGGCGTAGCCCCCCCACTCCCCGAGACATGTTCTAGCCTGG
TCCGGTGAAAACGCGGCGTGCTGCGTCCCGGCTTTGTAGGGATGCGGGGC
CAACTGTCTAACGACTTCGGCATGCCCGGCAAAGAGTAACCCCCCCCCCC
CCTCGACACTTCGATATCTGACGGTGCTCTGCCCACTACCTCCCTCCCTA
CTTCCCCTTTGCCCCCCTCTCGGCTTAGGACAAAATGGACACCGTGTGCC
GAGAGATGTACCGGGCGGCATCTGTGGAGTGGAGCCCAGAAGCGGAGGAG
AAGGTGGCGATTTACGAGAAGGCCGGATACGGGAAGGTGTGCTTGTGTGT
TGAGAAAATATACGTACGTACAATGAAATAATACTAGCTTGTGGTACTAG
CTAATATTAGCGTGTGTGTCCGTGTCTCTGCAGTTTCAGCATCGACGGTG
CCGATCGGCCGATCAACCAGAATTCGTCAGTCTCAGTCTCACGGGGCGGG
ACGGGGCAGGGCGGGCGCTGCACAGAACGTTTTCGAGATTTTCGGGCTGT
GTGTTGTGCAGACGTACACGCAAAGGAGCGGACTACGGAGGCGTGTGTGT
CGGTTTTAGTAGTGGCATCGATCGACCGCGCTGACCGTTGGAAGTTCGTC
AGTCTCAGTCCAGTCCGAATGAAAACGAAGAACGCTTCTATAAAGGTCAT
GTGTGTGTCATTCGTATTCGCATTGGTGGCGCTACAATAATCGGTTGACC
AATGAAAATGCAGTCTCAGTGAGGCTAAAAATGGAACAACAACGCTTCTC
GTAAAGGCCCTGGCCTGGGACCCCACGCTGGGAGGGTCATTGGGGAGGCT
ATGATATTCTTCGGTTTAAAAGACAGAATCGTGTGTGCTTGTGGTTCTGA
TCATACACGTCGACGGGGCGAGTCGCCTGACCACTGAGTTCGCCAGTCTC
CATGCCACACGCACGCCGGTTCTTACGACATCTTTGTTGTGAATGTGCCT
TTTGTGTCTCTCTTTACCATCGATGGAGCAGAGGAAGAAATTATTCCAGA
CACATTCCAGAGTAGCGACCCCCCCCTCCCTTTTGTCACCATGATCCCCG
GTTGCTGCCGTGTCTGTTCCGGTGTCCACGGAGCGATAGAGGCACAATCT
TTTCTTCTCGTGGAAAACAACGTATCTCATTTCTTGTGATCATTCTCCCC
CTGCCCGTTGTCCCCGTTGCGTCCTTCACTTGCTCCCTTGTGTGCTACGG
CTTGCCGCATCCCGGTCACCTGTAAAGCCGGAGCTTTGACGGAACTAAAA
TTTGACTTCCTTTGTGCTCAATTAAACATGCTTGTAGGCGTCGAACCTGT
GTTGCATTTACAGCTGCCCTTGTACTCGATTCAAACATGCATTTACGTGT
GTCTCCTGTTGTTAATGTTTCAGCTGCCTTTGCACTCAATTCAAACACGC
TTTTACGTGCGACGAAACTATTCTTAAATTGTTCAGCTGCCGATTTGCGT
GGCGAAGACGCAGTACTCCCTGTCCACGGACCCGTCCGCCAAGGGGGCCC
CGTCAGGACATACGGTGAGGGGGTGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14018:8..3336+

>mRNA_E-fasciculatus_F_contig14018.2946.1 ID=mRNA_E-fasciculatus_F_contig14018.2946.1|Name=mRNA_E-fasciculatus_F_contig14018.2946.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1110bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14018:8..3336+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCCCCCCCCCGCCGCCTCCCGCCGTGCTCTCCTTGGGTCAGGAGGAAAA
CCTTGACTTGTTGCGGAGAGGGTGTGCCAACCTCGCGGTCCACATCACCA
ACGCTCTCAAGTACGGCGTAAAGCCCCCCCCCCCGCCGCCTCCCGCCGTG
CTCTCCTTGGGTCAGGAGGAAAACCTTGACTTGTTGCGGAGAGGGTGTGC
CAACCTCGCGGTCCACATCACCAACGCTCTCAAGTACGGCGTAAAGGTGG
TAGTGGGCGTCAATGTCTTCTCAACAGACACTCAGGCGGAGATCGATCTC
GTGAGGGAGCTCGCCCTGGAGGCCGGGGCGTTTTCCGCCGTGAAATCGTC
ACACTGGTGGTAGTGGGCGTCAATGTCTTCTCAACAGACACTCAGGCGGA
GATCGATCTCGTGAGGGAGCTCGCCCTGGAGGCCGGGGCGTTTTCCGCCG
TGAAATCGTCACACTGGGCGGAAGGAGGAGCTGGGGCGGTGCAACTAGCG
GAGGCCGTGATGGAAGCGTGCGCGGCTACCCGAGCGGATCCTTCGACGCC
ATTTCGGTTCCTGTACCCGTCGGAAGCATCCATCAAGGGCGGAAGGAGGA
GCTGGGGCGGTGCAACTAGCGGAGGCCGTGATGGAAGCGTGCGCGGCTAC
CCGAGCGGATCCTTCGACGCCATTTCGGTTCCTGTACCCGTCGGAAGCAT
CCATCAAGGACAAAATGGACACCGTGTGCCGAGAGATGTACCGGGCGGCA
TCTGTGGAGTGGAGCCCAGAAGCGGAGGAGAAGGTGGCGATTTACGAGAA
GGCCGGATACGGGAAGGACAAAATGGACACCGTGTGCCGAGAGATGTACC
GGGCGGCATCTGTGGAGTGGAGCCCAGAAGCGGAGGAGAAGGTGGCGATT
TACGAGAAGGCCGGATACGGGAAGCTGCCGATTTGCGTGGCGAAGACGCA
GTACTCCCTGTCCACGGACCCGTCCGCCAAGGGGGCCCCGTCAGGACATA
CGGTGAGGGGGTGGTGACTGCCGATTTGCGTGGCGAAGACGCAGTACTCC
CTGTCCACGGACCCGTCCGCCAAGGGGGCCCCGTCAGGACATACGGTGAG
GGGGTGGTGA
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