mRNA_E-fasciculatus_F_contig14013.2944.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14013.2944.1
Unique NamemRNA_E-fasciculatus_F_contig14013.2944.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14013.2944.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 1.980e-48
Identity = 97/125 (77.60%), Postives = 102/125 (81.60%), Query Frame = 1 
Query:    4 SSTQDDKPGKLDGATTEPISGSSQAADRDHTTQAQISSFSALXXXXXXXQTSSEQVRQLVEALGANRSSPGTGLSETGTLGELDRLVGMANDLGDMVSRHVMNEDIQRREQALSPGPKAYYTTVR 378
            SSTQ DKPGK DGATTEPISGSS+ AD DH TQAQISSFS+L       Q S EQV QLVEALG NRSSPGTGL+ TGTLGEL+RLV MA DLGDMVSRHV NEDIQRRE AL PGPKAYYT +R
Sbjct:  406 SSTQGDKPGKPDGATTEPISGSSREADMDHITQAQISSFSSLSTLCGGSQASLEQVGQLVEALGINRSSPGTGLNGTGTLGELNRLVAMAEDLGDMVSRHVTNEDIQRRELALPPGPKAYYTAIR 530
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BLAST of mRNA_E-fasciculatus_F_contig14013.2944.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 6.710e-48
Identity = 97/125 (77.60%), Postives = 100/125 (80.00%), Query Frame = 1 
Query:    4 SSTQDDKPGKLDGATTEPISGSSQAADRDHTTQAQISSFSALXXXXXXXQTSSEQVRQLVEALGANRSSPGTGLSETGTLGELDRLVGMANDLGDMVSRHVMNEDIQRREQALSPGPKAYYTTVR 378
            SSTQ DKPGK D ATTEPISGSS+ AD DH TQAQISSFSAL           EQVRQLVEAL  NR SPGTGLSETGTLGEL+RLV MA DLGDMVSRHVMNEDIQRRE AL PGPKAYYT +R
Sbjct:  379 SSTQGDKPGKTDRATTEPISGSSREADMDHMTQAQISSFSALSTLCGGSHKRLEQVRQLVEALDINRFSPGTGLSETGTLGELNRLVAMAEDLGDMVSRHVMNEDIQRRELALPPGPKAYYTAIR 503
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BLAST of mRNA_E-fasciculatus_F_contig14013.2944.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 1.670e-46
Identity = 96/125 (76.80%), Postives = 100/125 (80.00%), Query Frame = 1 
Query:    4 SSTQDDKPGKLDGATTEPISGSSQAADRDHTTQAQISSFSALXXXXXXXQTSSEQVRQLVEALGANRSSPGTGLSETGTLGELDRLVGMANDLGDMVSRHVMNEDIQRREQALSPGPKAYYTTVR 378
            SSTQ DKPGK D ATT PISGSS+ AD D  TQAQISSFSAL         S EQVRQLVEALG NRSSPGTGLSETGTLGE++RLV MA DLG MVSRHVMNEDIQRRE AL PGPKAYYT +R
Sbjct:  591 SSTQGDKPGKPDRATTGPISGSSREADMDDMTQAQISSFSALSTLCGGRHKSLEQVRQLVEALGINRSSPGTGLSETGTLGEVNRLVAMAEDLGGMVSRHVMNEDIQRRELALPPGPKAYYTAIR 715
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BLAST of mRNA_E-fasciculatus_F_contig14013.2944.1 vs. uniprot
Match: A0A6H5K9X6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9X6_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 8.090e-19
Identity = 47/66 (71.21%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:   97 TQAQISSFSALXXXXXXXQTSSEQVRQLVEALGANRSSPGTGLSETGTLGELDRLVGMANDLGDMV 294
            TQAQ+SSFSAL       ++S EQVRQLVEALG NRSSPGTGL ET TLGEL+RLV MA DL D+V
Sbjct:    2 TQAQVSSFSALSTLCGGSRSSLEQVRQLVEALGINRSSPGTGLGETATLGELNRLVAMAEDLDDIV 67
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BLAST of mRNA_E-fasciculatus_F_contig14013.2944.1 vs. uniprot
Match: A0A6H5K9E9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E9_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.940e-6
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   10 TQDDKPGKLDGATTEPISGSSQAADRDHTTQAQISS 117
            TQ DKPGK DGATTEP+SGSS+ AD DH TQAQ+SS
Sbjct:   31 TQGDKPGKPDGATTEPVSGSSREADMDHMTQAQMSS 66
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BLAST of mRNA_E-fasciculatus_F_contig14013.2944.1 vs. uniprot
Match: D7FUA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA5_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 3.150e-5
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    4 SSTQDDKPGKLDGATTEPISGSSQAADRDHTTQAQI 111
            SSTQ DKPG  DGATTEPISGSS+ AD DH TQ QI
Sbjct:  281 SSTQGDKPGNPDGATTEPISGSSREADMDHMTQVQI 316
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BLAST of mRNA_E-fasciculatus_F_contig14013.2944.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 7.170e-5
Identity = 33/102 (32.35%), Postives = 55/102 (53.92%), Query Frame = 1 
Query:   73 QAADRDHTTQAQISSFSALXXXXXXXQTSSEQVRQLVEALGANRSSPGTGLSETGTLGELDRLVGMANDLGDMVSRHVMNEDIQRREQALSPGPKAYYTTVR 378
            +AA+ D   + Q+SS + L         + E ++++++A  A        LS+     +L  L+ MA  LG++   H  ++D+QR+E AL+P  KAYYT VR
Sbjct:  469 KAAEVDRLFRVQLSSSAGLDSLIKENPEALEDIQRVIKAPAAGGFYFDDELSDMERRRKLGALMNMAKALGEVALSHTEDKDVQRKELALAPFSKAYYTAVR 570
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14013.2944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FUA1_ECTSI1.980e-4877.60Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7FUA2_ECTSI6.710e-4877.60Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
D7FUA0_ECTSI1.670e-4676.80Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
A0A6H5K9X6_9PHAE8.090e-1971.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9E9_9PHAE1.940e-677.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUA5_ECTSI3.150e-577.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FH89_ECTSI7.170e-532.35Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14013contigE-fasciculatus_F_contig14013:2722..3340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.9
Seed ortholog evalue7.6e-43
Seed eggNOG ortholog2880.D7FUA1
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons2
Model size382
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927893.7738001-CDS-E-fasciculatus_F_contig14013:2721..30151622927893.7738001-CDS-E-fasciculatus_F_contig14013:2721..3015Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14013 2722..3015 +
1695995741.6185808-CDS-E-fasciculatus_F_contig14013:2721..30151695995741.6185808-CDS-E-fasciculatus_F_contig14013:2721..3015Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14013 2722..3015 +
1622927893.7893772-CDS-E-fasciculatus_F_contig14013:3253..33401622927893.7893772-CDS-E-fasciculatus_F_contig14013:3253..3340Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14013 3254..3340 +
1695995741.6298592-CDS-E-fasciculatus_F_contig14013:3253..33401695995741.6298592-CDS-E-fasciculatus_F_contig14013:3253..3340Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14013 3254..3340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14013.2944.1prot_E-fasciculatus_F_contig14013.2944.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14013 2722..3340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14013.2944.1

>prot_E-fasciculatus_F_contig14013.2944.1 ID=prot_E-fasciculatus_F_contig14013.2944.1|Name=mRNA_E-fasciculatus_F_contig14013.2944.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=127bp
NSSTQDDKPGKLDGATTEPISGSSQAADRDHTTQAQISSFSALSALSGVS
QTSSEQVRQLVEALGANRSSPGTGLSETGTLGELDRLVGMANDLGDMVSR
HVMNEDIQRREQALSPGPKAYYTTVRI
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mRNA from alignment at E-fasciculatus_F_contig14013:2722..3340+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14013.2944.1 ID=mRNA_E-fasciculatus_F_contig14013.2944.1|Name=mRNA_E-fasciculatus_F_contig14013.2944.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=619bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14013:2722..3340+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AATTCCTCGACACAAGACGACAAGCCTGGGAAGCTAGACGGCGCTACCAC
GGAACCGATTTCTGGTTCGTCACAGGCGGCAGATAGGGACCACACGACTC
AGGCTCAGATTTCTTCCTTTTCGGCGTTGAGCGCGCTATCTGGAGTGAGT
CAAACAAGCTCGGAGCAAGTTAGACAGCTGGTTGAAGCACTGGGCGCCAA
TCGGTCTTCTCCCGGCACGGGACTTAGCGAGACGGGCACGCTCGGGGAGC
TGGACAGGCTGGTGGGAATGGCCAACGATCTAGGCGACATGGTGGTGAGC
AATACACTGTAGTCTAGTCATTCCTCGGCCCAGGATAAGGGCCTGGCGGA
CGCACTTTAGCCGACTCTCATATAGTGCACCTTTTGTTCTGAACTTGAAG
ACTTTCCATTTTGCAGATGTTCTTGTGCCGGTGCCCCTTCGCACACGCGC
ATGGATCGCAATCCTCCTGGTTCCCTAACGATGTTTTGGCCCGACGTTAC
TGCAAACTGCGATGTTTTGTCTGAATGCGCAGTCGAGACACGTGATGAAT
GAAGACATACAACGGAGGGAGCAGGCGTTGTCCCCAGGTCCCAAGGCATA
CTACACGACGGTCCGGATT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14013:2722..3340+

>mRNA_E-fasciculatus_F_contig14013.2944.1 ID=mRNA_E-fasciculatus_F_contig14013.2944.1|Name=mRNA_E-fasciculatus_F_contig14013.2944.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=762bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14013:2722..3340+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AATTCCTCGACACAAGACGACAAGCCTGGGAAGCTAGACGGCGCTACCAC
GGAACCGATTTCTGGTTCGTCACAGGCGGCAGATAGGGACCACACGACTC
AGGCTCAGATTTCTTCCTTTTCGGCGTTGAGCGCGCTATCTGGAGTGAGT
CAAACAAGCTCGGAGCAAGTTAGACAGCTGGTTGAAGCACTGGGCGCCAA
TCGGTCTTCTCCCGGCACGGGACTTAGCGAGACGGGCACGCTCGGGGAGC
TGGACAGGCTGGTGGGAATGGCCAACGATCTAGGCGACATGGTGAATTCC
TCGACACAAGACGACAAGCCTGGGAAGCTAGACGGCGCTACCACGGAACC
GATTTCTGGTTCGTCACAGGCGGCAGATAGGGACCACACGACTCAGGCTC
AGATTTCTTCCTTTTCGGCGTTGAGCGCGCTATCTGGAGTGAGTCAAACA
AGCTCGGAGCAAGTTAGACAGCTGGTTGAAGCACTGGGCGCCAATCGGTC
TTCTCCCGGCACGGGACTTAGCGAGACGGGCACGCTCGGGGAGCTGGACA
GGCTGGTGGGAATGGCCAACGATCTAGGCGACATGGTGTCGAGACACGTG
ATGAATGAAGACATACAACGGAGGGAGCAGGCGTTGTCCCCAGGTCCCAA
GGCATACTACACGACGGTCCGGATTTCGAGACACGTGATGAATGAAGACA
TACAACGGAGGGAGCAGGCGTTGTCCCCAGGTCCCAAGGCATACTACACG
ACGGTCCGGATT
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