mRNA_E-fasciculatus_F_contig1401.2943.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1401.2943.1 vs. uniprot
Match: D8LF14_ECTSI (Putative: flagellar basal body protein [Chlamydomonas reinhardtii] n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF14_ECTSI) HSP 1 Score: 234 bits (596), Expect = 2.090e-75 Identity = 119/131 (90.84%), Postives = 120/131 (91.60%), Query Frame = 1
Query: 1 KIWNTRLRLMQLVESARDMGKYGPSKPPAEHGLDE----YEGASIDKGEYYQPDPTGECKRTGNGVGPQLCETLERVCVDAESFLGKEQTQRRVAVTQEALDEKMDNIRGAVTMAFPMGLPEFDPVRLTIE 381
KIWNTRLRLMQLVESARDMGKYGPSKPPAEHGLDE YEGASIDKG YY PDPTG KRTGNGVGPQLCETLE VCVDAE+ LGKEQ QRRVAVTQEALDEKMDNIRGAVTMAFPMGLPEFDPVRLTIE
Sbjct: 33 KIWNTRLRLMQLVESARDMGKYGPSKPPAEHGLDEVKEEYEGASIDKGPYYHPDPTG--KRTGNGVGPQLCETLEGVCVDAEALLGKEQAQRRVAVTQEALDEKMDNIRGAVTMAFPMGLPEFDPVRLTIE 161
BLAST of mRNA_E-fasciculatus_F_contig1401.2943.1 vs. uniprot
Match: A0A835YNS8_9STRA (Putative flagellar basal body protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNS8_9STRA) HSP 1 Score: 162 bits (409), Expect = 3.960e-47 Identity = 81/131 (61.83%), Postives = 100/131 (76.34%), Query Frame = 1
Query: 1 KIWNTRLRLMQLVESARDMGKYGPSKPPAEHGLDE----YEGASIDKGEYYQPDPTGECKRTGNGVGPQLCETLERVCVDAESFLGKEQTQRRVAVTQEALDEKMDNIRGAVTMAFPMGLPEFDPVRLTIE 381
++WNTR+RLM LV + R++ ++GP KP AEHG+DE YEG ++KGE+Y+PDPTG KRTGNGV PQL ET+ERVC DAE + K A ++E LDEK+DNIRGAVTMA+PMGLP FDPVRL IE
Sbjct: 33 RMWNTRVRLMYLVGAVRELAQHGPYKPEAEHGIDEIKEQYEGVQVNKGEFYRPDPTG--KRTGNGVSPQLMETIERVCQDAEMAVSK------AAASKEQLDEKLDNIRGAVTMAYPMGLPLFDPVRLAIE 155
BLAST of mRNA_E-fasciculatus_F_contig1401.2943.1 vs. uniprot
Match: A0A6V1QYW4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QYW4_HETAK) HSP 1 Score: 149 bits (377), Expect = 2.930e-42 Identity = 77/130 (59.23%), Postives = 96/130 (73.85%), Query Frame = 1
Query: 4 IWNTRLRLMQLVESARDMGKYGPSKPPAEHGLDE----YEGASIDKGEYYQPDPTGECKRTGNGVGPQLCETLERVCVDAESFLGKEQTQRRVAVTQEALDEKMDNIRGAVTMAFPMGLPEFDPVRLTIE 381
I NTR+RL L + R + +YGP KP + GLDE +EG +I+KGE+Y+PDPTG RTGNGVGP L +T E+VC DAE+ + EQ +RRVA TQ ALDEK+ N RGAVTMA+PMGLPE+D VRL +E
Sbjct: 34 ISNTRVRLRCLAGALRQLAEYGPMKPMDQQGLDEIKEEHEGVAIEKGEFYKPDPTG--MRTGNGVGPTLTQTFEQVCADAEAAINVEQVRRRVATTQAALDEKLANCRGAVTMAYPMGLPEWDTVRLLLE 161
BLAST of mRNA_E-fasciculatus_F_contig1401.2943.1 vs. uniprot
Match: A0A7S2UZF3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZF3_9STRA) HSP 1 Score: 142 bits (357), Expect = 2.930e-39 Identity = 74/131 (56.49%), Postives = 91/131 (69.47%), Query Frame = 1
Query: 4 IWNTRLRLMQLVESARDMGKYGPSKPPAEHGLDEYEGAS-----IDKGEYYQPDPTGECKRTGNGVGPQLCETLERVCVDAESFLGKEQTQRRVAVTQEALDEKMDNIRGAVTMAFPMGLPEFDPVRLTIE 381
I NTR+++ L + R +GKYGP KPP + GLDE E D+GE+Y+ DPTG RTG GVGPQL ETLERVC DAE + Q Q R+A TQE LD+K+ NIRGAVTMA+PMGLP++D VR +E
Sbjct: 34 IQNTRVKIRALAGAVRALGKYGPMKPPDQQGLDEVEDKFGEKPIPDRGEFYEADPTG--IRTGEGVGPQLVETLERVCADAEQAISVNQVQLRIAATQENLDDKVANIRGAVTMAYPMGLPDYDVVRQLLE 162
BLAST of mRNA_E-fasciculatus_F_contig1401.2943.1 vs. uniprot
Match: A0A6U4FW40_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FW40_9STRA) HSP 1 Score: 138 bits (348), Expect = 6.540e-38 Identity = 73/130 (56.15%), Postives = 88/130 (67.69%), Query Frame = 1
Query: 4 IWNTRLRLMQLVESARDMGKYGPSKPPAEHGLDE----YEGASIDKGEYYQPDPTGECKRTGNGVGPQLCETLERVCVDAESFLGKEQTQRRVAVTQEALDEKMDNIRGAVTMAFPMGLPEFDPVRLTIE 381
+WN RLRL QL + D+ +GP KP + GLDE Y GASID+GE+Y PDP G RTGNGVGPQL +T E V DA + L +RR A + E L+EK+ N+RGAV MAFPMGLPEFD V LT+E
Sbjct: 36 VWNLRLRLGQLCGAMMDLAAHGPMKPNDQQGLDEIQEKYSGASIDRGEFYAPDPNG--MRTGNGVGPQLTQTFEAVVADARTALDPALARRRQACSAEDLEEKLANMRGAVVMAFPMGLPEFDTVALTLE 163
BLAST of mRNA_E-fasciculatus_F_contig1401.2943.1 vs. uniprot
Match: A0A6U4GK07_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4GK07_9STRA) HSP 1 Score: 132 bits (333), Expect = 6.960e-37 Identity = 70/125 (56.00%), Postives = 84/125 (67.20%), Query Frame = 1
Query: 4 IWNTRLRLMQLVESARDMGKYGPSKPPAEHGLDE----YEGASIDKGEYYQPDPTGECKRTGNGVGPQLCETLERVCVDAESFLGKEQTQRRVAVTQEALDEKMDNIRGAVTMAFPMGLPEFDPV 366
+WN RLRL QL + D+ +GP KP + GLDE Y GASID+GE+Y PDP G RTGNGVGPQL +T E V DA + L +RR A + E L+EK+ N+RGAV MAFPMGLPEFD V
Sbjct: 36 VWNLRLRLGQLCGAMMDLAAHGPMKPNDQQGLDEIQEKYSGASIDRGEFYAPDPNG--MRTGNGVGPQLTQTFEAVVADARTALDPALARRRQACSAEDLEEKLANMRGAVVMAFPMGLPEFDTV 158
BLAST of mRNA_E-fasciculatus_F_contig1401.2943.1 vs. uniprot
Match: A0A7S2C740_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C740_9STRA) HSP 1 Score: 134 bits (338), Expect = 1.950e-36 Identity = 68/130 (52.31%), Postives = 91/130 (70.00%), Query Frame = 1
Query: 1 KIWNTRLRLMQLVESARDMGKYGPSKPPAEHGLD----EYEGASIDKGEYYQPDPTGECKRTGNGVGPQLCETLERVCVDAESFLGKEQTQRRVAVTQEALDEKMDNIRGAVTMAFPMGLPEFDPVRLTI 378
++WN RLRL LV + R++ KYGP KP E G+D +YEGA+++K E+YQ DP G RTGNG GPQL ETLERVC DAE+ L ++R V+ + LD+K+ N++GAV MA+PMGLP +D V L +
Sbjct: 33 RVWNKRLRLGLLVGAIRELSKYGPMKPQDEAGIDTLKEQYEGAAMEKSEHYQADPAG--VRTGNGPGPQLAETLERVCSDAEAALSANLVKQRTPVSMDLLDDKLANMQGAVMMAYPMGLPAWDTVALAL 160
BLAST of mRNA_E-fasciculatus_F_contig1401.2943.1 vs. uniprot
Match: A0A2P4YJD9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YJD9_9STRA) HSP 1 Score: 121 bits (304), Expect = 1.240e-32 Identity = 66/130 (50.77%), Postives = 85/130 (65.38%), Query Frame = 1
Query: 1 KIWNTRLRLMQLVESARDMGKYGPSKPPAEHGLDEYEGASIDK--GEYYQPDPTGECKRTGNGVGPQLCETLERVCVDAESFL-GKEQTQRRVAVTQEALDEKMDNIRGAVTMAFPMGLPEFDPVRLTIE 381
++ N RLRL L ++ +G+YG +KPP E GLD Y+ DK GE+Y+ DP G RTG GV PQL + L RV VDA++ L K Q RRV + + L EK+ NIRGAV MAFPMGLP DPV+L ++
Sbjct: 33 RVQNLRLRLAALSDALEGLGRYGMAKPPQEQGLDAYQEGVADKQRGEFYEADPLGH--RTGEGVSPQLKDVLARVSVDAKTMLDSKTQVARRVCIEESELLEKLQNIRGAVAMAFPMGLPVHDPVKLMLD 160
BLAST of mRNA_E-fasciculatus_F_contig1401.2943.1 vs. uniprot
Match: A0A0N7L7U6_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L7U6_PLAHL) HSP 1 Score: 124 bits (311), Expect = 2.010e-32 Identity = 64/130 (49.23%), Postives = 87/130 (66.92%), Query Frame = 1
Query: 1 KIWNTRLRLMQLVESARDMGKYGPSKPPAEHGLDEYEGASIDK--GEYYQPDPTGECKRTGNGVGPQLCETLERVCVDAESFL-GKEQTQRRVAVTQEALDEKMDNIRGAVTMAFPMGLPEFDPVRLTIE 381
++ N RLRL L ++ +G+YG +KPP E GLD Y+ + DK GE+Y+ DP G RTG+GV PQL + L RV DA++ L K Q RR+ + + L EK+ NIRGAV MAFPMGLP +DPV+L ++
Sbjct: 33 RLQNLRLRLAALADALEGLGRYGMAKPPEEQGLDAYQEGAADKQRGEFYEADPLGH--RTGDGVSPQLKDVLARVAADAKAILDSKTQVTRRICIDENELIEKLQNIRGAVAMAFPMGLPAYDPVKLILD 160
BLAST of mRNA_E-fasciculatus_F_contig1401.2943.1 vs. uniprot
Match: A0A662XK36_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XK36_9STRA) HSP 1 Score: 124 bits (311), Expect = 2.010e-32 Identity = 67/130 (51.54%), Postives = 85/130 (65.38%), Query Frame = 1
Query: 1 KIWNTRLRLMQLVESARDMGKYGPSKPPAEHGLDEYEGASIDK--GEYYQPDPTGECKRTGNGVGPQLCETLERVCVDAESFL-GKEQTQRRVAVTQEALDEKMDNIRGAVTMAFPMGLPEFDPVRLTIE 381
++ N RLRL L ++ +G+YG +KPPAE GLD Y+ + DK GE+Y DP G RTG GV PQL + L RV DA++ L K RRV V + L EK+ NIRGAV MAFPMGLP FDPV+L ++
Sbjct: 33 RLQNLRLRLAALADALEGLGRYGAAKPPAEQGLDAYQEGAADKQRGEFYDADPLGH--RTGEGVSPQLRDVLARVAADAKTLLDSKTLVARRVCVDEPELVEKLQNIRGAVAMAFPMGLPAFDPVKLLLD 160 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1401.2943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1401.2943.1 >prot_E-fasciculatus_F_contig1401.2943.1 ID=prot_E-fasciculatus_F_contig1401.2943.1|Name=mRNA_E-fasciculatus_F_contig1401.2943.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=118bp MQLVESARDMGKYGPSKPPAEHGLDEYEGASIDKGEYYQPDPTGECKRTGback to top mRNA from alignment at E-fasciculatus_F_contig1401:16216..17835+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1401.2943.1 ID=mRNA_E-fasciculatus_F_contig1401.2943.1|Name=mRNA_E-fasciculatus_F_contig1401.2943.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1620bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1401:16216..17835+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1401:16216..17835+ >mRNA_E-fasciculatus_F_contig1401.2943.1 ID=mRNA_E-fasciculatus_F_contig1401.2943.1|Name=mRNA_E-fasciculatus_F_contig1401.2943.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=708bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1401:16216..17835+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |