mRNA_E-fasciculatus_F_contig1401.2942.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1401.2942.1 vs. uniprot
Match: D8LF13_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF13_ECTSI) HSP 1 Score: 772 bits (1994), Expect = 1.320e-273 Identity = 444/546 (81.32%), Postives = 458/546 (83.88%), Query Frame = 3
Query: 48 MEGEGGADVCEIFEGSEVLLAVRTLAKELLSIEIPSLKELALAFQAAFETSWHSLSAWFSVLTLFLSPVLQFLAVLARAVWPHAQTAAITVWKYQASLPVSTLCAEAAAVVLFVALVLLRRFIVRQRYLPRARTRVRNFRARINTAYGSFTRSVERNLRLSARAFPHVVYWTAAASLAWLAPGPTASLRDKCWVVVTATWPFVYASYLVLHVRDHNEVNGDDSADGSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATPGLAHGASVTPQDVDQVLMYWVVFTVARCWGLLAAYVPETFFTPYVRTVTFFLALWMHLPGPGGGLKVVYGWLEPLVYKYVRDLRMPQNGYTGTLKRVQDLLVFVRLLTAEQAELLVDNITDSWMLVPALAFFLTPSFMTELACLYAGLVIPSFNSIKTIGRRSNISA------------DSARERWLTYWVAYGGWWHLSLGLGGILRVLPLAAHFELALLLWLQVPLFRGGARMLDFLERCMVRLTYGSDVASTPV 1649
M EGGADVCE EGSEVLLA+RTL KELLSIE+PSLKE LAFQAAFETSWHSLSAWFSVLTLFLSPVLQFLAVLARAVWPHAQTAAITV KYQASLP STLCAEAAAVVLF+ALVLLRRFIVRQRY+PRAR RVRNFRARINTAY SFT SVERNLRLSARAFPHVVYWTAAAS AWLAP T SLRDK WV TATWP +YA YLVL VR N VN +DSA GSSV XXXXXXXXXXXXXXXXXXXXXXXXXXXX A GLA GA V PQDVD+VLMYWVVFTVARCWGLLAAYVPETFFTPYVRTV FFLALWMHLPGPG GL+VVY WLEPLV+ YV+DLRMPQNGYTGTLKRVQDLLV VRLLT E+AELLVDNITDSWMLVPALAFFLTPSFMTELACLYAGLVIPSFNSIKT+GRRSN SA DSAR RWLTYWVAYG WWHLSL LGGILRVLPLAAH ELALLLWLQVPLFRGG R+LDF ERCM R T+GSDVASTPV
Sbjct: 1 MVDEGGADVCEKIEGSEVLLALRTLVKELLSIEVPSLKEFVLAFQAAFETSWHSLSAWFSVLTLFLSPVLQFLAVLARAVWPHAQTAAITVCKYQASLPASTLCAEAAAVVLFIALVLLRRFIVRQRYIPRARRRVRNFRARINTAYMSFTASVERNLRLSARAFPHVVYWTAAASFAWLAPDLTGSLRDKFWVFATATWPTLYAVYLVLLVRSQNAVNDEDSAGGSSVNGTPAGAGTRGTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------ARSGLARGAGVMPQDVDRVLMYWVVFTVARCWGLLAAYVPETFFTPYVRTVAFFLALWMHLPGPGSGLQVVYAWLEPLVHTYVKDLRMPQNGYTGTLKRVQDLLVLVRLLTEEKAELLVDNITDSWMLVPALAFFLTPSFMTELACLYAGLVIPSFNSIKTLGRRSNTSAVSTAWAALATSADSARVRWLTYWVAYGSWWHLSLCLGGILRVLPLAAHAELALLLWLQVPLFRGGGRILDFGERCMDRWTFGSDVASTPV 531
BLAST of mRNA_E-fasciculatus_F_contig1401.2942.1 vs. uniprot
Match: A0A835ZEP2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEP2_9STRA) HSP 1 Score: 224 bits (571), Expect = 6.640e-60 Identity = 154/509 (30.26%), Postives = 239/509 (46.95%), Query Frame = 3
Query: 174 AFQAAFETSWHSLSAWFSVLTLFLSPVLQFLAVLARAVWPHAQTAAITVWKYQASLPVSTLCAEAAAVVLFVALVLLRRFIVRQRYLPRARTRVRNFRARIN-------TAYGSFTRSVERNLRLSARAFPHVVYWTAAASLAWLAPGPTASLR-DKCWVVVTATWPFVYASYLVLHVRDHNEVNGDDSADGSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATPGLAHGASVTPQDVDQVLMYWVVFTVARCWGLLAAYVPE---------TFFTPYVRTVTFFLALWMHLPGPGGGLKVVYGWLEPLVYKYVRDLRMPQNG-YTGTLKRVQDLLVFVRLLTAEQAELLVDNITDSWMLVPALAFFLTPSFMTELACLYAGLVIPSFNSIKTIGRRSNI---SADSARERWLTYWVAYGGWWHLSLGLGGILRVLPLAAHFELALLLWLQVPLFRGGARMLDFLERCMVRLTYGSDVA 1637
A A +W SL W + L L P + + +WP + A + + ++Q + ++ + EAA + VA++LLRR+++R R LPRA++ + RA + A+ RSV + +L+A+ PH++YW AA+ A L P A+L W VT WP + ++ R SA XXXXXXXX PG ++VD+ LMYW+VF +A+C + VP T + +R T +W+ LPG GG+ + Y +EPL+++Y+R +R P K LV +R+L+ E+A ++ +NI DSWML+P +P F+ C+YAGL++P+ NS K + R+ + S AR RWLTYW +G +W+ + L +L LP A H +LALLLWLQ+P+FRG +L +E +V + G +
Sbjct: 87 AASEAASYTWKSLVGWLRLAHLILKPFIGIANAIGMEIWPFVRAAGVGLARWQVTRSLTFILLEAALIGAVVAMLLLRRYMIRNRLLPRAQSWIEAKRALVRQRHDSAKAAFQQLQRSVAKKSKLAAQMLPHMLYWAVAAAAALLLPAHMAALSLGPAWEFVTVGWPILTT---IMLARGRKRSGASPSA-------------------ALDEGVKGGARPSIRAGTPSGKGKRGAXXXXXXXXQVAKPKGEEEPG--------GRNVDEALMYWIVFALAQCCAYVLGLVPGVGRLVLSTGTGWGLQLRMWTMLAGIWLQLPGSAGGIHMAYALIEPLIHEYIRAVRPPGGADAVARSKNGLSFLVTLRILSQERASMIAENIADSWMLLPTPLLVFSPGFVVRGGCMYAGLLVPAINSAKALAHRNTLIDNSQGGARTRWLTYWAVFGMYWYFQIALASLLAWLPFANHAQLALLLWLQLPVFRGSYYVLAKIESALVAFSLGGTAS 565
BLAST of mRNA_E-fasciculatus_F_contig1401.2942.1 vs. uniprot
Match: A0A6H5K644_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K644_9PHAE) HSP 1 Score: 143 bits (361), Expect = 2.980e-36 Identity = 77/110 (70.00%), Postives = 82/110 (74.55%), Query Frame = 3
Query: 1356 LVIPSFNSIKTIGRRSNISADS------------ARERWLTYWVAYGGWWHLSLGLGGILRVLPLAAHFELALLLWLQVPLFRGGARMLDFLERCMVRLTYGSDVASTPV 1649
L+ P KT+GRRSN SA S AR RWLTYWVAYG WWHLSL +GGILRVLPLAAH ELALLLWLQVPLFRGG R+LDF ERCM R T+GSDVASTPV
Sbjct: 21 LLAPIAALSKTLGRRSNNSAVSTAWAALATSANIARVRWLTYWVAYGSWWHLSLCVGGILRVLPLAAHAELALLLWLQVPLFRGGDRILDFGERCMDRWTFGSDVASTPV 130
BLAST of mRNA_E-fasciculatus_F_contig1401.2942.1 vs. uniprot
Match: A0A7S2V8D4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8D4_9STRA) HSP 1 Score: 138 bits (347), Expect = 1.180e-32 Identity = 87/241 (36.10%), Postives = 129/241 (53.53%), Query Frame = 3
Query: 951 VDQVLMYWVVFTV-ARC---WGLLAAYVPETFFTPYVRTVTFFLALWMHLPGPGGGLKVVYGWLEPLVYKYVRDLRMP--QNGYTGTLKRVQDLLVFVRLLTAEQAELLVDNITDSWMLVPALAFFLTPSFMTELACLYAGLVIPSFNSIKTIGRRSNISADSARERWLTYWVAYGGWWHLSLGLGGILRVLPLAAHFELALLLWLQVPLFRGGARMLDFLERCMVRLT--YGSDVASTPV 1649
+ Q LMYWV+F C W A +P+ P + FF +WM LP GG+ +++ LEPL+ KY++D++ P + G LK + V + L++ E+ LV N+ DSW+LVPAL PS T LYAG +P+FNSIK++ +ERWL YW+ Y +W + L L L +P HF L L++WLQ+P FRG R++ + R + L + S +TP+
Sbjct: 7 LQQCLMYWVLFAAFVLCNYLWSTFAWRLPQM---PCGAEMVFFFFVWMQLPF--GGVSILFHQLEPLIRKYIKDIKRPIGKEESLGYLK----VAVTLGLISKERGHALVSNLLDSWLLVPALLGLTMPSPFTYAFSLYAGAAVPAFNSIKSLKAEQE---GPNQERWLRYWMCYAPFWVVHLALDSHLWFVPFLYHFWLLLVMWLQLPYFRGAQRIVQTVGREINALVEDFNSRRPTTPI 235
BLAST of mRNA_E-fasciculatus_F_contig1401.2942.1 vs. uniprot
Match: A0A7S3LQR1_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LQR1_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 8.050e-8 Identity = 63/252 (25.00%), Postives = 98/252 (38.89%), Query Frame = 3
Query: 945 QDVDQVLMYWVVFTVARCWGLLAAYVPETFFTPYVRTVTFFLALWMHLPGPGGGLKVVYGWLEPLVYKYVRDLRMPQNGYTGTLKRVQDLLVFVRLLTAEQAELLVDNI--TDSWMLVPALAFFLTPSFMTELACLYAGLVIPSFNSIKTI---------GRRSNISADSARER---------------------------WLTYWVAYGGWWHLSLGLGGI-LRVLPLAAHFELALLLWLQVPLFRGGARM 1583
Q V L YW + +VA L P +LW+ +PG G + + ++ PLV KY + + +P G + T + +VF +L +E+ + + T +L L PS T + C+ GL P ++ I + RRS D+ +R WL YWV Y + + GL + L P +L L+LWLQ+P FRG R+
Sbjct: 398 QSVLYWLRYWTILSVALVGEQLPIIGHIIRLLPVWPAARLIFSLWLQVPGTSGA-DLAFEFVVPLVAKYWKRIDLP--GPSSTTQNFALNMVFSQLPVSEETRTKMTEVAETGGTLLFTTLPLLFMPSIFTTIGCVVVGLGKPMYSGIVAVLAVEKAAQKARRSLNKKDNRNKRSSVNRLLRHVPGGGDMGVAAAALHCTQWLEYWVVYTSFMFVH-GLASVFLFWFPFWVQMQLLLILWLQLPYFRGSRRI 645
BLAST of mRNA_E-fasciculatus_F_contig1401.2942.1 vs. uniprot
Match: A0A1R3GFJ1_COCAP (HVA22-like protein n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3GFJ1_COCAP) HSP 1 Score: 58.9 bits (141), Expect = 3.230e-6 Identity = 29/86 (33.72%), Postives = 48/86 (55.81%), Query Frame = 3
Query: 1326 MTELACLYAGLVIPSFNSIKTIGRRSNISADSARERWLTYWVAYGGWWHLSLGLGGILRVLPLAAHFELALLLWLQVPLFRGGARM 1583
+T AC G+VIP +++ + I R ++ R++WLTYW AYG + + + +L P HF+ A L+WLQ+P G ++
Sbjct: 26 VTRAACCSVGVVIPVYSTFRAIERHD----ENERQKWLTYWAAYGSFTLVEVFSDKLLFWFPYYYHFKFAFLVWLQLPSTEGAKKI 107
BLAST of mRNA_E-fasciculatus_F_contig1401.2942.1 vs. uniprot
Match: A0A2V3ITW0_9FLOR (Protein HVA22 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITW0_9FLOR) HSP 1 Score: 60.8 bits (146), Expect = 6.610e-6 Identity = 63/231 (27.27%), Postives = 103/231 (44.59%), Query Frame = 3
Query: 933 SVTPQDVDQV--LMYWVVFTVA-RCWGLLAAYVPETF--FTPYVRTVTFFLALWMHLPGPGGGLKVVYGWLEPLVYKYVRD-LRMPQNGYTGTLKRVQDLLVFVRLLTA------EQAELLVDNITDSWMLVPALAFFLTPSFMTELACLYAGLVIPSFNSIKTIGRRSNISADSARERWLTYWVAYGGWWHLSLGLGGILRVLPLAAHFELALLLWLQVPLFRGGARMLD 1589
SV QD ++ L WVVF +A C L + P+ F + F+ +W L G +V+Y ++ + R LR P+ + VQ L +F+RLL A +Q L +S + + F +TP +T + + GL++P++ +I I + R WL+YW L LPL H ++ +++WLQ+P FRG + +LD
Sbjct: 283 SVPNQDKAELKALRSWVVFGIAWGCRSLSWYFCPQLLEHFVTSFDILLFYFFVWAELELTKGA-EVLYS----IIARTSRSRLRKPRG------EGVQKLNIFLRLLVAAGILKDDQTSDLFGFAAESGLTLLGTIFLITPRMLTFVGTVAIGLMMPAYLTIAVI--EAGDPKGLYRYNWLSYWSVLSLIEAAYTAASNRLGWLPLWYHVKMCVVMWLQLPYFRGASTLLD 500 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1401.2942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1401.2942.1 >prot_E-fasciculatus_F_contig1401.2942.1 ID=prot_E-fasciculatus_F_contig1401.2942.1|Name=mRNA_E-fasciculatus_F_contig1401.2942.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=568bp MEGEGGADVCEIFEGSEVLLAVRTLAKELLSIEIPSLKELALAFQAAFETback to top mRNA from alignment at E-fasciculatus_F_contig1401:9943..14567- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1401.2942.1 ID=mRNA_E-fasciculatus_F_contig1401.2942.1|Name=mRNA_E-fasciculatus_F_contig1401.2942.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4625bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1401:9943..14567- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1401:9943..14567- >mRNA_E-fasciculatus_F_contig1401.2942.1 ID=mRNA_E-fasciculatus_F_contig1401.2942.1|Name=mRNA_E-fasciculatus_F_contig1401.2942.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3408bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1401:9943..14567- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |