mRNA_E-fasciculatus_F_contig14000.2939.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14000.2939.1
Unique NamemRNA_E-fasciculatus_F_contig14000.2939.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14000.2939.1 vs. uniprot
Match: A0A6H5JMR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR1_9PHAE)

HSP 1 Score: 339 bits (869), Expect = 2.500e-109
Identity = 165/184 (89.67%), Postives = 169/184 (91.85%), Query Frame = 1 
Query:    4 AFMCGILNETRYHALSKKMYFPVLVVASGLATSALMNNDGFEDLHDPGGELSPAEAALSIILXXXXXXXXXXHYFLAWKLLPGGWLGWGMVSGQVTEPPPPSRAENRYLQYMASITVITLYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDHISVAWLGITTGVFLQGVGAYSFRVLLQG 555
            AFMCGILN TRYHALSKKMYFPVLV+ASGLATSALMNNDGFE LHDPGG+LSPAEAALSIIL          HYFLAWK LPGGWLGWGMVSGQV EPPPPSRAENRYLQYMASITVI LYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDD+ISVAWLGITTGVFLQGVGAYSFRVL+QG
Sbjct:   94 AFMCGILNGTRYHALSKKMYFPVLVIASGLATSALMNNDGFEGLHDPGGDLSPAEAALSIILLILVALVFAYHYFLAWKFLPGGWLGWGMVSGQVAEPPPPSRAENRYLQYMASITVIMLYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFRVLMQG 277
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BLAST of mRNA_E-fasciculatus_F_contig14000.2939.1 vs. uniprot
Match: D7G1N8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1N8_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 2.630e-87
Identity = 134/151 (88.74%), Postives = 137/151 (90.73%), Query Frame = 1 
Query:  109 MNNDGFEDLHDPGGELSPAEAALSIILXXXXXXXXXXHYFLAWKLLPGGWLGWGMVSGQVTEPPPPSRAENRYLQYMASITVITLYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDHISVAWLGITTGVFLQGVGAYSFRVLLQGYE 561
            MNNDGFE LHDPGGELSPAEAALSIIL          HYFLAWK LPGGWLGWGMVSGQV EPPPPSRAENRYLQYMASITVI +YIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDD+ISVAWLGITTGVFLQGVGAYSFRVLLQGY+
Sbjct:    1 MNNDGFEGLHDPGGELSPAEAALSIILLVLVALVFAYHYFLAWKFLPGGWLGWGMVSGQVAEPPPPSRAENRYLQYMASITVIMVYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFRVLLQGYD 151
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BLAST of mRNA_E-fasciculatus_F_contig14000.2939.1 vs. uniprot
Match: A0A6H5JIF9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIF9_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 3.390e-49
Identity = 89/186 (47.85%), Postives = 120/186 (64.52%), Query Frame = 1 
Query:    4 AFMCGILNETRYHALSKKMYFPVLVVASGLATSALMNNDGFEDLHDPGGELSPAEAALSIILXXXXXXXXXXHYFLAWKLLPGGWLGWGMVSGQVTEPPP---PSRAENRYLQYMASITVITLYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDHISVAWLGITTGVFLQGVGAYSFRVLLQ 552
            AF+C  L+  R+H+LSK+ Y PV+VV SG+ TSAL  NDGF D H+    ++ A   +S +L          H+F+AW  LPG      M+SG V+ P     P R+ NR+ +YMA+  ++  ++ L +AF + RGD W+YHY LLAW+MSLIA FDD  SV WLG+TTG FLQGVGAYSF+ L +
Sbjct:   66 AFLCDTLDSERFHSLSKERYLPVVVVGSGITTSALTKNDGFVDTHEIEDGMTTAVNVVSTLLVIAVGLAFVYHFFVAWTTLPGA----VMISGGVSTPEDATAPVRSGNRFARYMATAVLVAAFVALNAAFVHRRGDNWNYHYTLLAWVMSLIAIFDDPFSVVWLGVTTGAFLQGVGAYSFQFLFR 247
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BLAST of mRNA_E-fasciculatus_F_contig14000.2939.1 vs. uniprot
Match: D8LDF2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF2_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 5.610e-27
Identity = 70/179 (39.11%), Postives = 100/179 (55.87%), Query Frame = 1 
Query:    1 QAFMCGILNETRYHALSKKMYFPVLVVASGLATSALMNNDGFED-LHDPGGELSPAEAALSIILXXXXXXXXXXHYFLAWKLLPGGWLGWGMVSGQVTEPPPPSRAENRYLQYMASITVITLYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDHISVAWLGITTGVFLQGVGAYS 534
            QA+ C I+ E R+  L+ K+YFP+L+V + LA S L   +   + L +   +L+  + A+ IIL          H+  AWK+LPG  L    +SG     P     E+    Y+AS  +I  Y +L++AF+ +R D W Y   LLAW++SL A F   ISV WL +TTGVFLQG+G  S
Sbjct:   91 QAWFCEIMEERRFRDLASKVYFPLLMVGAALALSGLSRAESLRNSLQEERRDLTTFQVAIFIILLILTVVVLLLHFAEAWKVLPGAHL----ISG--VGVPRVEVREDLLSIYVASRMLILAYFILYAAFSVARDDGWGYQLYLLAWVLSLFAQFKSFISVFWLAVTTGVFLQGIGNQS 263
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BLAST of mRNA_E-fasciculatus_F_contig14000.2939.1 vs. uniprot
Match: D8LDF3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF3_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.920e-18
Identity = 63/186 (33.87%), Postives = 91/186 (48.92%), Query Frame = 1 
Query:    1 QAFMCGILNETRYHALSKKMYFPVLVVASGLATSALMNNDGFE----DLHDPGGELSPAEAALSIILXXXXXXXXXXHYFLAWKLLPGGWLGWGMVSGQVTEPPPPSRAENRYLQYMASITVITLYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDHISVAWLGITTGVFLQGVGAYSFRVL 546
            QA+ C IL + R+  L K  +   +++ + +  SAL    G E    D      E S   + + +            H+  AW  LPG  L    +SG V   PP    E+ +  Y +S  VI  + +LF++F  S  D +DY   LLAW++SLIA F   +S  WLG+ TG+FLQG+GA   R L
Sbjct:   60 QAYWCEILLDDRFEELKKAPWIFGVILITPIIISALGRIGGLERWDKDNEGKDFEFSALRSTIFVFGLIAAVLLVAWHFARAWLTLPGMQL----LSGGVKVEPPK---EDLHGIYSSSRIVIIAWCILFTSFIISEDDGFDYRGALLAWMLSLIAVFPHPVSYIWLGVNTGIFLQGIGANRLRFL 238
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14000.2939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JMR1_9PHAE2.500e-10989.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1N8_ECTSI2.630e-8788.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIF9_9PHAE3.390e-4947.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LDF2_ECTSI5.610e-2739.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LDF3_ECTSI1.920e-1833.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14000contigE-fasciculatus_F_contig14000:166..2900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_000440.1
Exons2
Model size1869
Cds size558
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14000.2939.1prot_E-fasciculatus_F_contig14000.2939.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14000 1468..2891 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927893.1283326-UTR-E-fasciculatus_F_contig14000:165..14671622927893.1283326-UTR-E-fasciculatus_F_contig14000:165..1467Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14000 166..1467 -
1695995741.2260098-UTR-E-fasciculatus_F_contig14000:165..14671695995741.2260098-UTR-E-fasciculatus_F_contig14000:165..1467Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14000 166..1467 -
1622927893.1747901-UTR-E-fasciculatus_F_contig14000:2891..29001622927893.1747901-UTR-E-fasciculatus_F_contig14000:2891..2900Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14000 2892..2900 -
1695995741.2541144-UTR-E-fasciculatus_F_contig14000:2891..29001695995741.2541144-UTR-E-fasciculatus_F_contig14000:2891..2900Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14000 2892..2900 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927893.146067-CDS-E-fasciculatus_F_contig14000:1467..19481622927893.146067-CDS-E-fasciculatus_F_contig14000:1467..1948Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14000 1468..1948 -
1695995741.2350194-CDS-E-fasciculatus_F_contig14000:1467..19481695995741.2350194-CDS-E-fasciculatus_F_contig14000:1467..1948Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14000 1468..1948 -
1622927893.1594646-CDS-E-fasciculatus_F_contig14000:2814..28911622927893.1594646-CDS-E-fasciculatus_F_contig14000:2814..2891Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14000 2815..2891 -
1695995741.2443142-CDS-E-fasciculatus_F_contig14000:2814..28911695995741.2443142-CDS-E-fasciculatus_F_contig14000:2814..2891Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14000 2815..2891 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14000.2939.1

>prot_E-fasciculatus_F_contig14000.2939.1 ID=prot_E-fasciculatus_F_contig14000.2939.1|Name=mRNA_E-fasciculatus_F_contig14000.2939.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=186bp
MCGILNETRYHALSKKMYFPVLVVASGLATSALMNNDGFEDLHDPGGELS
PAEAALSIILLLLVALVFFYHYFLAWKLLPGGWLGWGMVSGQVTEPPPPS
RAENRYLQYMASITVITLYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAA
FDDHISVAWLGITTGVFLQGVGAYSFRVLLQGYEG*
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mRNA from alignment at E-fasciculatus_F_contig14000:166..2900-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14000.2939.1 ID=mRNA_E-fasciculatus_F_contig14000.2939.1|Name=mRNA_E-fasciculatus_F_contig14000.2939.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2735bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14000:166..2900- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGCATTTATGTGCGGCATCCTTAACGAGACCAGGTACCACGCCCTGTC
GAAGAAGATGTACTTTCCGGTGTTGGTGGTAGCGAGGTGAGTCTGATTTA
ACATCGGCCGTATGTTTGTCTACCTACAGCATCGTACACTTTGGATGTGG
CACCGACGGTGCATTGATTCTACAAGCGCATCAGCTCCCGGCCTTCTCGA
CTTGCGGCTTCCCTTGGCAGGGAAATTATGCATGCTAGGCCCGCAACACG
CACCGCGCTGTAGACTGCTGTATGTTGCCTGTGGTTCCCCGCTGGGGGCA
GCAAGCTTATGAAACACGTTGCCGCCGGTCCTATTTGTGTCATCAACTCA
AAAAATATTGCGATATTGTCAGAGTAGGCGACGATCCTGGGCCCATAACT
CTGTCTCACAGTGACAGTAATAGCATAACCGTCAGGCCCTTCAGGCGCTG
AAGAAATAGTGAAAATGATTGGGGTGTATGTAGTCCGAAGGAAGCTTTCC
ATCATCGCGATTTGGGAGGGCTTCGATTCTCGCTGCTGGGGGAAATGTGG
GTATTTCCGAACGGGTTATTCAGGGAGTGGGAAGGTGGAAGTCACAGGTA
TTCAAACCTTTCACAACCAACAACTTGGAGCGCAGACGGCGAGTGTCGCA
TTGTCTAGAGGGTGCACAAGGGGAAGTGAAGTTTTATTCTTGTTTCTCTA
CCGGTTGGTTCCCTCTCACCCTGCACAAAAGGTACCTACGCTAGGCCCAC
GTTTCTGAAGTAGGCCACGGTTTGATCTAATTCTCTTAAACATACATGCA
CAGCGCGGGTTCTCGCGACGTAGTCGTGCGTGAAAGGCATCCGTCCGCGG
GGCTGACCTGCCCATTACCGTTAATCCCGCGGACGTCCCCAAATAGCTAA
AGGACAGCCTGCTCTCTTGCGCGTGTTTTCCACCTTACCACTGTCGAAAC
AGCGGCCTGGCCACCTCCGCCCTCATGAACAACGACGGGTTCGAGGACCT
GCATGACCCCGGAGGAGAGTTATCGCCCGCGGAAGCAGCACTGTCCATCA
TCCTCCTGCTCTTGGTCGCGTTGGTGTTCTTCTACCACTACTTCCTGGCC
TGGAAGCTCTTGCCCGGGGGTTGGCTGGGGTGGGGGATGGTCTCGGGGCA
GGTTACGGAGCCCCCTCCGCCTTCTCGAGCAGAAAACCGGTACCTCCAGT
ACATGGCGTCGATCACCGTCATCACGCTGTACATCGTCCTATTCTCGGCG
TTCGCTTACAGCAGGGGGGACGAGTGGGACTACCACTACGTCCTCCTGGC
GTGGCTGATGTCCCTGATTGCCGCCTTCGACGACCACATCAGCGTGGCGT
GGCTGGGAATAACGACCGGCGTGTTTCTGCAGGGGGTCGGGGCGTACTCT
TTCCGGGTTTTGTTGCAAGGCTACGAGGGCTAGAGAGAAGAGGGGCACGC
CTACGGCGGTGTGACCGTGTGTTGTTCGCTTTCGGCTGGCAACAGCTTCT
GTGCGCAGGCTCACGCCTAGATCGACTGCACTGGCTGCTAGCCAGCAGAT
CAAATTACGCCAGTCCTAGAGAGTAGCGAGATGGAAGTGCGAGCATGTTC
GGGACGTGTGCCTTCATGCGGTACTGCGGTCTGAACGGTAGCCTCCTCCA
GTGATCTTGGTGTAGTTCTTGCTTTTTCCTTTTTGGTGTGAGGATGGCGT
CATCTTCTGTTCGTCTGCAAGACGGTTTTGTTTTTTGTCGCCGGTTGAAC
GGATCAGACCAGGTGTTTCATGTTTTCGCGTGAATTTTACTCCATGAATA
CATACAAAAGGGAATGGCATCGCGAGAACGAACGTCGAATCACAATGTGA
CAGGGGAAATAATGTGAAACCGTCGGTTCTTGGTGGCGTCTTGGTGTTTT
TCTGGGTTTTATTTTTAGCTGCTCTCGCCATACAGAATAGCCCGTCAGAG
TTTTCTCTGCGTATGCCTCTCTGTTGGTGCCCGAGAAAAAGCTGTCTGTT
GATTGAGTGTTTTGTAGCATTCTCCATGAACGGGCAGCTTATCGTATTTT
CTGTTTGACTCCTCTTGAGGTGTGTTGTTGCTGATATCGCGTCGGTTTGG
TGCTTTACTGACGCTGGTTCAAGTGTTTGGATTATCTATGTTGATTTTGA
GTCTCATGTACATGTAAGTTCGATGTTATTATGAAGTAAATTCTTGTATC
ACAGAGCAAATTGGTGTTTGGCTTATACGTTGGCGGTGCTTTCCATTCAC
CCATTTTTTTTTTGCCTGGCTTCGATTATTCTACGATCGCGCCTTTGACA
GAGTGGGTACTGTGGCGGATCAGATTCAGGAGTTTTGATTCTTTTTTTTC
CATTTCTTGTTCGTGTAGCCGTGGATGGCACCTGTACGGGAAGGTGTGAC
AGCATGACGCCCCCGCCTTGTTAGCGCTGCCATATGTGCAGTGCGAGATA
AAAGCGTTCTTCGAGACGAGACGTCCATGTGCAGAAGTTGGGGCCTCCTA
ATCAGGTGTTGTACGCTCTGGCTACACCTTATAACGGTCGTTTCAACATA
ATTGTTTCGGGAGTATGTTCCGGCACCCGGAACCACTCCGAATTTTGTTT
CAAATAATGGAGTGTCGTTTAAAACGACCTGAAGCACGAAGTATCCTCCA
CGTATTCCCCCCACCTCCTCTGCATGCCCATCACGCCTTGGATAATACCC
TATTAAATAGGCAGGCTATTGGTCGTCACAATAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14000:166..2900-

>mRNA_E-fasciculatus_F_contig14000.2939.1 ID=mRNA_E-fasciculatus_F_contig14000.2939.1|Name=mRNA_E-fasciculatus_F_contig14000.2939.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1116bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14000:166..2900- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGCGGCATCCTTAACGAGACCAGGTACCACGCCCTGTCGAAGAAGAT
GTACTTTCCGGTGTTGGTGGTAGCGAGATGTGCGGCATCCTTAACGAGAC
CAGGTACCACGCCCTGTCGAAGAAGATGTACTTTCCGGTGTTGGTGGTAG
CGAGCGGCCTGGCCACCTCCGCCCTCATGAACAACGACGGGTTCGAGGAC
CTGCATGACCCCGGAGGAGAGTTATCGCCCGCGGAAGCAGCACTGTCCAT
CATCCTCCTGCTCTTGGTCGCGTTGGTGTTCTTCTACCACTACTTCCTGG
CCTGGAAGCTCTTGCCCGGGGGTTGGCTGGGGTGGGGGATGGTCTCGGGG
CAGGTTACGGAGCCCCCTCCGCCTTCTCGAGCAGAAAACCGGTACCTCCA
GTACATGGCGTCGATCACCGTCATCACGCTGTACATCGTCCTATTCTCGG
CGTTCGCTTACAGCAGGGGGGACGAGTGGGACTACCACTACGTCCTCCTG
GCGTGGCTGATGTCCCTGATTGCCGCCTTCGACGACCACATCAGCGTGGC
GTGGCTGGGAATAACGACCGGCGTGTTTCTGCAGGGGGTCGGGGCGTACT
CTTTCCGGGTTTTGTTGCAAGGCTACGAGGGCTAGCGGCCTGGCCACCTC
CGCCCTCATGAACAACGACGGGTTCGAGGACCTGCATGACCCCGGAGGAG
AGTTATCGCCCGCGGAAGCAGCACTGTCCATCATCCTCCTGCTCTTGGTC
GCGTTGGTGTTCTTCTACCACTACTTCCTGGCCTGGAAGCTCTTGCCCGG
GGGTTGGCTGGGGTGGGGGATGGTCTCGGGGCAGGTTACGGAGCCCCCTC
CGCCTTCTCGAGCAGAAAACCGGTACCTCCAGTACATGGCGTCGATCACC
GTCATCACGCTGTACATCGTCCTATTCTCGGCGTTCGCTTACAGCAGGGG
GGACGAGTGGGACTACCACTACGTCCTCCTGGCGTGGCTGATGTCCCTGA
TTGCCGCCTTCGACGACCACATCAGCGTGGCGTGGCTGGGAATAACGACC
GGCGTGTTTCTGCAGGGGGTCGGGGCGTACTCTTTCCGGGTTTTGTTGCA
AGGCTACGAGGGCTAG
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