mRNA_E-fasciculatus_F_contig1400.2936.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1400.2936.1 vs. uniprot
Match: A0A6H5JM23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM23_9PHAE) HSP 1 Score: 432 bits (1110), Expect = 7.220e-148 Identity = 260/402 (64.68%), Postives = 280/402 (69.65%), Query Frame = 1
Query: 4 EISASRRQKKQHHLTKPVEWHTPSFVRWFDAKLYIMRDIQQVQAWYLQGLKAKTSETTAARRSTLPTTPSKSPQTPAPVVVKAVKTSAPTTPTKKXSPLPSXXXXXXXXXXXXXXXXXXXXXPPVSFAAKGKRQRDGEDLQKPEETRAERMKAAPLRLRNMVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSTCSGKDAKTIGVRTPRDMVITLFTAEIDCKTLTGAATKVAEVHCCHQPQHENEGWVRVPYLSDEDGGKKMAGAFVHLPVTILPPTCGQVFDEGTVYVRPGGGPPTREWHDEDQRVVWEVAKSSILKKVNLTFLSSKLGRSHLRDFVPAGKGSKCDSCNDDNRGCSWTPDGLELLCNYCADAPRREVGDYRELRGYGQFAWASACDCNC 1209
EI RR KQHH TKPVEWHTP FV+WFDAK IMRD+QQ QA + QG A+ S A RRS LP T S S +TPAPV++K VKT APTTPTKK SPL S XXXXXXXXXXXXXXXXXXX A+ KRQRDGE LQKPEETRAER KAA R+ N+VP XXXX A +TCS KD KTI AA K+AEVHCCHQPQHENEGWVRVPYLSDEDGGK++ GAFVHLPV ILPPTCGQV DEGTVYVRPGGG PTREW+ EDQRVVWEV KS+IL K VPAG+G+KCD+C+DD RGCSWTPDGLELLCNYCADAPRREVGDYRELRGYGQF W SACDCNC
Sbjct: 2 EIRPRRRPNKQHHPTKPVEWHTPLFVKWFDAKSCIMRDVQQTQALFSQGQHAEKSPARAVRRSKLPDTASNSTRTPAPVLMKVVKTPAPTTPTKKPSPLASRPXXXXXXXXXXXXXXXXXXXX-XXXASTRKRQRDGEGLQKPEETRAERTKAATRRVPNIVPVPTTATTSXXXXIT--------------AFTTCSEKDVKTIA-----------------------AAKKIAEVHCCHQPQHENEGWVRVPYLSDEDGGKEVVGAFVHLPVAILPPTCGQVCDEGTVYVRPGGGRPTREWYHEDQRVVWEVPKSTILDK------------------VPAGEGAKCDACHDDKRGCSWTPDGLELLCNYCADAPRREVGDYRELRGYGQFTWVSACDCNC 347
BLAST of mRNA_E-fasciculatus_F_contig1400.2936.1 vs. uniprot
Match: D7FPS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS6_ECTSI) HSP 1 Score: 309 bits (792), Expect = 3.720e-99 Identity = 210/370 (56.76%), Postives = 234/370 (63.24%), Query Frame = 1
Query: 94 AKLYIMRDIQQVQAWYLQGLKAKTSETTAARRSTLPTTPSKSPQTPAPVVVKAVKTSAPTTPTKKXSPLPSXXXXXXXXXXXXXXXXXXXXXPPVSFAAKGKRQRDGEDLQKPEETRAERMKAAPLRLRNM--VPXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSTCSGKDAKTIGVRTPRDMVITLFTA---------------EIDCKTLTGAATKVAEVHCCHQPQHENEGWVRVPYLSDEDGGKKMAGAFVHLPVTILPPTCGQVFDEGTVYVRPGGGPPTREWHDEDQRVVWEVAKSSILKKVNLTFLSSKLGRSHLRDFVPAGKGSKCDSCNDDNRGCSWTPDGLELLCNYCADAPRREVGDY 1152
AK IMRD+QQ QA + QG +A+ A RS LP TPS S +T X XXXXXXXX P V A+ GKRQRDGE LQKPEETRAERMKAAP RL+N+ VP XXXXXXXXXXXXXXXX ++ + E D +T+ AA K+AEVHCCHQPQHENEGWVRVPYLSDED GK++AGAFVHLPVTILPPTCGQV DEGTVYVRPGGGPPTREW+ EDQRVVW+V KS IL KV LTF ++ LR+ VPAGKG+KCD+C+DD RGCSWTPDGLELLCNYCADAPRREVGDY
Sbjct: 2 AKSCIMRDVQQTQALFSQGRQARKPPAPAVERSKLPYTPSSSTRTXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXAPIRALPPASPRRPTVPLASTGKRQRDGEGLQKPEETRAERMKAAPRRLQNIGPVPTTAIATASTXXXXXXXXXXXXXXXXITITATVTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKDVETIA-AAKKIAEVHCCHQPQHENEGWVRVPYLSDEDEGKEVAGAFVHLPVTILPPTCGQVCDEGTVYVRPGGGPPTREWYHEDQRVVWKVPKSIILDKVILTFSAASRDARCLRNMVPAGKGAKCDACHDDRRGCSWTPDGLELLCNYCADAPRREVGDY 369
BLAST of mRNA_E-fasciculatus_F_contig1400.2936.1 vs. uniprot
Match: D7FU97_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU97_ECTSI) HSP 1 Score: 287 bits (735), Expect = 7.090e-91 Identity = 219/397 (55.16%), Postives = 242/397 (60.96%), Query Frame = 1
Query: 4 EISASRRQKKQHHLTKPVEWHTPSFVRWFDAKLYIMRDIQQVQAWYLQGLKAKTSETTAARRSTLPTTPSKSPQTPAPVVVKAVKTSAPTTPTKKXSPLPSXXXXXXXXXXXXXXXXXXXXXPPVSFAAKGKRQRDGEDLQKPEETRAERMKAAPLRLRNMVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSTCS------------------GKDAKTIGVRTPRDMVITLFTAEIDCKTLTGAATKVAEVHCCHQPQHENEGWVRVPYLSDEDGGKKMAGAFVHLPVTILPPTCGQVFDEGTVYVRPGGGPPTREWHDEDQRVVWEVAKSSILKKVNLTFLSSKLGRSHLRDFVPAGKGSKCDSCNDDNRGCSWTPDGLELLCNYCADAPRRE 1140
EIS RR KKQHH TKPVEWHTPSFV+WFDAK I+ D+QQ QA + QG +A+ A RS LP TPS S +TPAPVVV+AVKT APT PT X XXXXXXXXXXXXXXXXXX P V A+ GKRQRDG+ LQKPEETRAERMKAAP RL+N+ P XXXXXXXXXXXXXXXXXXXX + T + E D +T+ AA K+AEVHCCHQPQHENEGWVR+PYLSDEDGGK++AGAFVHLPVTILPPTCGQ VPAGKG+KCD+C+DD RGCSWTPDGLELLCNYCADAPRRE
Sbjct: 2 EISPRRRPKKQHHPTKPVEWHTPSFVKWFDAKSCIVLDVQQTQALFSQGREARKLPAPAVERSKLPYTPSSSTRTPAPVVVRAVKTPAPTIPTXXXXXX-XXXXXXXXXXXXXXXXXXXPRRPTVPLASTGKRQRDGKGLQKPEETRAERMKAAPRRLQNIGPVATTATALXXXXXXXXXXXXXXXXXXXXITITATITAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKDVETIA-AAKKIAEVHCCHQPQHENEGWVRMPYLSDEDGGKEVAGAFVHLPVTILPPTCGQ---------------------------------------------------------VPAGKGAKCDACHDDRRGCSWTPDGLELLCNYCADAPRRE 339 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1400.2936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1400.2936.1 >prot_E-fasciculatus_F_contig1400.2936.1 ID=prot_E-fasciculatus_F_contig1400.2936.1|Name=mRNA_E-fasciculatus_F_contig1400.2936.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=404bp QEISASRRQKKQHHLTKPVEWHTPSFVRWFDAKLYIMRDIQQVQAWYLQGback to top mRNA from alignment at E-fasciculatus_F_contig1400:4174..6506+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1400.2936.1 ID=mRNA_E-fasciculatus_F_contig1400.2936.1|Name=mRNA_E-fasciculatus_F_contig1400.2936.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2333bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1400:4174..6506+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1400:4174..6506+ >mRNA_E-fasciculatus_F_contig1400.2936.1 ID=mRNA_E-fasciculatus_F_contig1400.2936.1|Name=mRNA_E-fasciculatus_F_contig1400.2936.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2424bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1400:4174..6506+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |