mRNA_E-fasciculatus_F_contig140.2934.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig140.2934.1
Unique NamemRNA_E-fasciculatus_F_contig140.2934.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig140.2934.1 vs. uniprot
Match: D8LSF5_ECTSI (Selenopotein M n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF5_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 5.320e-61
Identity = 170/420 (40.48%), Postives = 176/420 (41.90%), Query Frame = 1 
Query:    1 GVTMKLFAFVIGALFVSRACAQAAALRGHILSCSG*KLNKLPEAKKFLKNPEHAASYEDIEVEFKAGKPPVLTLFDKASGEETESINLEKFTLDEVM**DVVCDE*KTRVMKATSHVCHR*VDVMRMLRATNGRRRP*M*LSSPLAMTLSQAENVLVSHPMSTLKRVALPSVFMHKLCCSR*TRWPTVFAWCASSRRLRPDQVR*SCFSP*TSTHVTRKAFPST*IGRCTLQF*GRFVCTRISVFFRRSHPLVNWLNPSGSCSHFARVEQCIVFINLSNIEPCRAQRRKQPCDPLLLPGVTFLLASRTAGCAILFLTPNEPSDQMHELLVSRGFVRRADAEDLAEVKAKEAIADEAAAAKKKERAEXXXKRRLERANGRPDEGDAKARAAEVRAAMDEKRKFDAAKREARESETGGSGEL 1260
            GV MKLFAFVIGALFVSRACAQAAA+RGHI+SCSG KLNKLPEAKKFLKNPEHAASYEDIEVEFKAGKPPVLTLFDKASGEETESINLEKFT+DE                                                                                                                                                                                                                                     MHELLVSRGFVRRADA DLAEVKAKEAIADEAAA +KKERAE   KRRLER N RPD+G AKA  AE RAAM EKRKFDAAKR+ARESE GGSGEL
Sbjct:    3 GVNMKLFAFVIGALFVSRACAQAAAMRGHIVSCSGXKLNKLPEAKKFLKNPEHAASYEDIEVEFKAGKPPVLTLFDKASGEETESINLEKFTIDE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MHELLVSRGFVRRADAADLAEVKAKEAIADEAAAKQKKERAEAAAKRRLERENNRPDKGAAKAHQAEGRAAMAEKRKFDAAKRKARESEAGGSGEL 193
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BLAST of mRNA_E-fasciculatus_F_contig140.2934.1 vs. uniprot
Match: A0A6H5KUZ9_9PHAE (Sep15_SelM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ9_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.590e-28
Identity = 79/98 (80.61%), Postives = 82/98 (83.67%), Query Frame = 1 
Query:  967 DQMHELLVSRGFVRRADAEDLAEVKAKEAIADEAAAAKKKERAEXXXKRRLERANGRPDEGDAKARAAEVRAAMDEKRKFDAAKREARESETGGSGEL 1260
            D+MHELLVSRGFVRRADA DLAEVKAKEAIADEAAA +KKERAEXXX   LER N RPD G AKA  AE RAAM EKRKFDA KR+ARESE  GSGEL
Sbjct:   61 DEMHELLVSRGFVRRADAADLAEVKAKEAIADEAAAKQKKERAEXXXXXXLERENDRPDRGAAKAHQAEDRAAMGEKRKFDAVKRKARESEADGSGEL 158
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig140.2934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSF5_ECTSI5.320e-6140.48Selenopotein M n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5KUZ9_9PHAE1.590e-2880.61Sep15_SelM domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig140contigE-fasciculatus_F_contig140:9233..11850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionselenoprotein M
Ec32 orthologEc-21_003500.1
Exons4
Model size1531
Cds size291
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927891.9603999-UTR-E-fasciculatus_F_contig140:9232..94151622927891.9603999-UTR-E-fasciculatus_F_contig140:9232..9415Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig140 9233..9415 +
1695995740.5577571-UTR-E-fasciculatus_F_contig140:9232..94151695995740.5577571-UTR-E-fasciculatus_F_contig140:9232..9415Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig140 9233..9415 +
1622927891.9728503-UTR-E-fasciculatus_F_contig140:9684..97861622927891.9728503-UTR-E-fasciculatus_F_contig140:9684..9786Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig140 9685..9786 +
1695995740.5657933-UTR-E-fasciculatus_F_contig140:9684..97861695995740.5657933-UTR-E-fasciculatus_F_contig140:9684..9786Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig140 9685..9786 +
1622927892.0170138-UTR-E-fasciculatus_F_contig140:10895..118501622927892.0170138-UTR-E-fasciculatus_F_contig140:10895..11850Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig140 10896..11850 +
1695995740.593425-UTR-E-fasciculatus_F_contig140:10895..118501695995740.593425-UTR-E-fasciculatus_F_contig140:10895..11850Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig140 10896..11850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927891.9876301-CDS-E-fasciculatus_F_contig140:10473..106591622927891.9876301-CDS-E-fasciculatus_F_contig140:10473..10659Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig140 10474..10659 +
1695995740.5745358-CDS-E-fasciculatus_F_contig140:10473..106591695995740.5745358-CDS-E-fasciculatus_F_contig140:10473..10659Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig140 10474..10659 +
1622927892.0050988-CDS-E-fasciculatus_F_contig140:10790..108951622927892.0050988-CDS-E-fasciculatus_F_contig140:10790..10895Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig140 10791..10895 +
1695995740.5840588-CDS-E-fasciculatus_F_contig140:10790..108951695995740.5840588-CDS-E-fasciculatus_F_contig140:10790..10895Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig140 10791..10895 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig140.2934.1prot_E-fasciculatus_F_contig140.2934.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig140 10474..10895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig140.2934.1

>prot_E-fasciculatus_F_contig140.2934.1 ID=prot_E-fasciculatus_F_contig140.2934.1|Name=mRNA_E-fasciculatus_F_contig140.2934.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=97bp
MHELLVSRGFVRRADAEDLAEVKAKEAIADEAAAAKKKERAEAAAKRRLE
RANGRPDEGDAKARAAEVRAAMDEKRKFDAAKREARESETGGSGEL*
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mRNA from alignment at E-fasciculatus_F_contig140:9233..11850+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig140.2934.1 ID=mRNA_E-fasciculatus_F_contig140.2934.1|Name=mRNA_E-fasciculatus_F_contig140.2934.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2618bp|location=Sequence derived from alignment at E-fasciculatus_F_contig140:9233..11850+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGTGACCATGAAGCTTTTCGCGTTCGTGATCGGGGCGCTTTTCGTGTC
CCGGGCTTGCGCCCAAGCGGCGGCGTTGAGGGGGCACATCCTGTCCTGCT
CCGGATGAAAACTAAACAAGCTCCCCGAGGCCAAGAAATTCCTCAAGAAT
CCCGAGCACGCCGCAAGCTACGAGGATATCGAAGTGAGCTCCCTCCGATG
GATCCCCAGTGTGCATTATGCCAAGCTGGTCGAAAGTTATTCCTGATGTT
GCTATTGAAGGGTCTGTAAGCACTGGTGTCTTGTACGTGGCGCAAGGTCG
TGCGACCTCCAACGTACCCGACCTGCCGTTTCCTTCTCCGTCATACGAGG
ATGCCCCCGCGACAACCAGAGTTACCGCTTCCGTTTTACCCGGCGTATTC
ATCCCTCGCCCGTTGCCTTGGTTTCTCTCTTTCTCTTGCTTTCCCATCCC
AGGTAGAATTCAAGGCCGGCAAGCCGCCGGTGTTGACTCTTTTCGACAAG
GCCTCCGGGGAGGAGACGGAGAGCATCAACCTCGAGAAGTTTACCCTCGA
TGAGGTGATGTAGTGAGATGTTGTGTGCGACGAATGAAAGACGAGGGTCA
TGAAGGCAACCTCGCACGTTTGCCATCGATGAGTTGATGTGATGAGGATG
TTGCGTGCGACGAACGGAAGGCGAAGGCCATGAATGTAATTATCTTCGCC
ACTCGCAATGACATTGTCCCAGGCGGAGAACGTTTTGGTTTCCCACCCTA
TGTCAACGCTGAAACGAGTTGCTCTCCCGTCAGTATTTATGCATAAACTG
TGCTGTTCTAGGTAGACTCGTTGGCCCACTGTGTTTGCCTGGTGTGCGTC
ATCTCGACGTCTCCGTCCGGACCAGGTCCGCTGAAGCTGTTTTTCGCCAT
GAACATCAACACACGTCACAAGAAAAGCTTTTCCGAGCACGTGAATCGGA
CGGTGTACACTGCAGTTTTAAGGTCGATTTGTTTGTACCCGTATATCCGT
TTTTTTCCGACGTTCTCATCCTCTCGTGAATTGGTTGAACCCTTCAGGAT
CTTGCTCCCATTTTGCTCGCGTTGAACAGTGTATCGTGTTCATAAACCTC
AGCAATATCGAACCCTGTCGCGCACAGAGAAGAAAGCAGCCTTGTGACCC
CCTCCTCCTTCCCGGTGTCACGTTTCTGCTTGCTTCACGTACTGCGGGCT
GTGCCATATTGTTTCTTACGCCGAACGAACCATCCGATCAGATGCACGAG
CTTCTCGTATCTCGGGGGTTTGTCCGCCGTGCGGATGCCGAGGACCTCGC
CGAGGTGAAGGCGAAGGAAGCCATCGCTGACGAAGCCGCCGCCGCGAAGA
AGAAAGAACGGGCCGAGGCCGCTGCCAAGCGCAGGCTCGAGAGGGCGAAC
GGCAGACCCGACGAGGGGGACGCGAAGGTGGGTGCTGAGGCGCAATATGT
CTGTCTTGCTCCCGCCGTGCACATGTGTACATGGATCACCCCGAAACGTC
ACCGGAGGTTGAGACACCATGCTTTTGCGTGTGTTGATCTCGTTCGTTCT
GCTGACAGGCCCGTGCAGCGGAAGTTCGCGCCGCTATGGACGAGAAGCGC
AAGTTCGACGCCGCGAAGCGGGAGGCCAGAGAAAGCGAGACCGGCGGGAG
CGGAGAGCTGTAGAAGGGGCGGCTGCCTCCACCTCTTCTATGTCAGCATT
GAGCGAGAGCTTCATGTTTTTGGTCGTCGACCTAGCGGAGCACACGCCAT
TTTCCCTCGGGGGATGTTTGGCTTTTCCGTCAGAGCATCATATGCAATGG
TATTACCGCCGACCACACTCGCCGAGAACTTGTTGTTGGTGCTGTCGACC
GATAGCATCGCGTGTGCTGGTAGGTCGAGTCCTTGTAGCTCCCTCCCTCC
GGAAGAAACCCTTGAACCAGCGACAGTCGCCGAGCAAATTCTTTGAGCGT
AATGACGGATGCACCTGCTTAAACCCTTGACCACGGGGATCAGGGTATCT
TGAAGTGTCTCGAAGGACTTTCCGGCGACGTTATAGGGTATCAAGGGTCC
GTTGAGGGTGTTTGGTGTGTCTTCTGGGTTTCGATTATAGATTTTTCATA
TTTCCCTCGATTGTGCCGTCGTGAAGGGCTGCGCCTTTTGGCAGTCGAGA
ATGCTGTGCGCCGATTGTTGGCGAAGTATTGGTATTTGTTTCGATGAACG
CGGGCGCCTTCGCGGGGGTGTGTCCATGTTTGCTCTTTGTTGCCGTAGGG
TAACCTCATGATGTGCGCCCTTACACGTGGTAGAAATTCAGGTGGAGGAG
GCGTCTTTTTTCCCCCGGCATGCATAGCGTATTTCCGCGGTGCATCGCAG
TGAGAGTGGTAGGCTTGTGTCGCACTCAACTTGGCGTGATCGACATTTCG
GGACTCTGGTTGTGTGGCGGCACGGGCGTAGGTGTAGGTGCAGGTGCAGG
TGTACCATGCACTTTCGTGCTGCAAAAACAACAGTTCCTTGTTGCGCATG
CAATTGTCGCGGGTTGCCGTGCCCGGCGAGCGACACTCTTGCGTAATGAA
ACATAAAGTGATACCTTGTTGCCCCCTGAAGTTGGCGTGACTCTGTCCCT
GGCAAGCAAAGCGCTGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig140:9233..11850+

>mRNA_E-fasciculatus_F_contig140.2934.1 ID=mRNA_E-fasciculatus_F_contig140.2934.1|Name=mRNA_E-fasciculatus_F_contig140.2934.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=582bp|location=Sequence derived from alignment at E-fasciculatus_F_contig140:9233..11850+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCACGAGCTTCTCGTATCTCGGGGGTTTGTCCGCCGTGCGGATGCCGA
GGACCTCGCCGAGGTGAAGGCGAAGGAAGCCATCGCTGACGAAGCCGCCG
CCGCGAAGAAGAAAGAACGGGCCGAGGCCGCTGCCAAGCGCAGGCTCGAG
AGGGCGAACGGCAGACCCGACGAGGGGGACGCGAAGATGCACGAGCTTCT
CGTATCTCGGGGGTTTGTCCGCCGTGCGGATGCCGAGGACCTCGCCGAGG
TGAAGGCGAAGGAAGCCATCGCTGACGAAGCCGCCGCCGCGAAGAAGAAA
GAACGGGCCGAGGCCGCTGCCAAGCGCAGGCTCGAGAGGGCGAACGGCAG
ACCCGACGAGGGGGACGCGAAGGCCCGTGCAGCGGAAGTTCGCGCCGCTA
TGGACGAGAAGCGCAAGTTCGACGCCGCGAAGCGGGAGGCCAGAGAAAGC
GAGACCGGCGGGAGCGGAGAGCTGTAGGCCCGTGCAGCGGAAGTTCGCGC
CGCTATGGACGAGAAGCGCAAGTTCGACGCCGCGAAGCGGGAGGCCAGAG
AAAGCGAGACCGGCGGGAGCGGAGAGCTGTAG
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