mRNA_E-fasciculatus_F_contig14.2932.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14.2932.1 vs. uniprot
Match: A0A6H5L268_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L268_9PHAE) HSP 1 Score: 749 bits (1935), Expect = 8.020e-257 Identity = 549/656 (83.69%), Postives = 562/656 (85.67%), Query Frame = 2
Query: 59 MEEVLSRKEKLAAWRAAKGKPLQAHKATAAXXXXXXXXXXXXXXXXAGRAGKNGVAKGVLQERPGAGNRVNKRTAPPQRKPFQVDTRSIQQASERRVQPGTPIHSLKKRLKRTAVAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVPGHVNGVSRSLDSARTKEVSDYLKSQISEANMLLEIAGVDAARTLLGDLLSCTGAARGVGELALYWAARAKLEEDAGMYLEARKLLDDGEAYISMPTQQKVMSKVMAAFEGRMNARAEVDIDRLLEDSVDGLSLNDSAANSNSPASSAPFRYDPNDLSTEDDTGSAQSAIKNLNFSKIAKESGG--GXXXXXXXRDASXXXXXXXXXXXXXXXXGSNTSLTTRSGASPDWMRDANDE----EEDSQTASSGAKGGATAGGEGIDSFSGVGVGVIYSDDDSDLSVSDIDEGVIARANAFAAEEEARKARLEEEEAGRVPGGGASDGVDDVNDGAGAEDGSLREEDVVAEVPEGADLDAGAAREA---NDE-SKKSGGNGGRNDRGVASTSSSTHMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------ELSPGSFITQVEGTGKDGKRTLTPVRRSRRISGVTKEPTPALLRKEMEAML 1948
MEEVLSRKEKLAAWRAAKGKPL+AHKA A XXXXXXXXXXXXXXXX GRAGK VAKGVLQ RPGAGN VNKRTAPPQRKPFQVDTRSIQQASERRVQPGTPIHSLKKRLKRTAVAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVPGH+NGVSRSLDSARTKEVSDYLKSQISEANMLLEIAGVDAARTLLGDLL G RGVGELALYWAARAKLEEDAGMYLEARKLLDDGEAYISMPTQQKVM+KV+AAFEGRMNARAE DIDRLLEDSVDGLSLN+SAANSNSPASSAPFRYDPNDLSTEDDTGSAQSAIKNLNFSKIAKESGG G R S GSNTSLTTRSGASPDWMR AN+E E+DSQ ASSGAKGGATA GEGI+SFS GVIYSDDDSDLSVSDIDEGVIARANAFAAEE+ARKAR+E EEAGRVPGG A D VDD GAGA+DGSLREEDVVAEVPEGADLDAGAAREA NDE +KKSG NG NDRGV+STSS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ELSPGSFITQVEGTGKDGKRTLTPVRRSRRISGV KEPTPALLRKEMEAML
Sbjct: 1 MEEVLSRKEKLAAWRAAKGKPLEAHKA-AXXXXXXXXXXXXXXXXXXGRAGKKDVAKGVLQARPGAGNMVNKRTAPPQRKPFQVDTRSIQQASERRVQPGTPIHSLKKRLKRTAVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVPGHMNGVSRSLDSARTKEVSDYLKSQISEANMLLEIAGVDAARTLLGDLLYSAGGGRGVGELALYWAARAKLEEDAGMYLEARKLLDDGEAYISMPTQQKVMAKVVAAFEGRMNARAEADIDRLLEDSVDGLSLNNSAANSNSPASSAPFRYDPNDLSTEDDTGSAQSAIKNLNFSKIAKESGGRGGASVDRASRAGSSTSGS-----------GSNTSLTTRSGASPDWMRGANEEVEEDEKDSQAASSGAKGGATASGEGIESFS----GVIYSDDDSDLSVSDIDEGVIARANAFAAEEDARKARMEAEEAGRVPGGVARDVVDD---GAGAKDGSLREEDVVAEVPEGADLDAGAAREATAGNDERAKKSGANGDSNDRGVSSTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTPHPKPLVKRTTPRRGKDVDGEELSPGSFITQVEGTGKDGKRTLTPVRRSRRISGVAKEPTPALLRKEMEAML 637
BLAST of mRNA_E-fasciculatus_F_contig14.2932.1 vs. uniprot
Match: D7G7W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W5_ECTSI) HSP 1 Score: 515 bits (1327), Expect = 2.340e-169 Identity = 357/404 (88.37%), Postives = 362/404 (89.60%), Query Frame = 2
Query: 59 MEEVLSRKEKLAAWRAAKGKPLQAHKATAAXXXXXXXXXXXXXXXXAGRAGKNGVAKGVLQERPGAGNRVNKRTAPPQRKPFQVDTRSIQQASERRVQPGTPIHSLKKRLKRTAVAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ARVPGHVNGVSRSLDSARTKEVSDYLKSQISEANMLLEIAGVDAARTLLGDLLSCTGAARGVGELALYWAARAKLEEDAGMYLEARKLLDDGEAYISMPTQQKVMSKVMAAFEGRMNARAEVDIDRLLEDSVDGLSLNDSAANSNSPASSAPFRYDPNDLSTEDDTGSAQSAIKNLNFSKIAKESGGGXXXXXXXRDASXXXXXXXXXXXXXXXXGSNTSLTTRSGASPDWMRDANDEEE-DSQTASS 1264
MEEVLSRKEKLAAWRAAKGKPL+AHK AAXXXXXXXXXXXXXXXX GRAGK VAKGVLQ RPGAGNRVNKRTAPPQRKPFQVDTRSIQQASERRVQPGTPIHSLKKRLKRTAVA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ARVPGHVNGVSRSLDSARTKEVSDYLKSQISEANMLLEIAGVDAARTLLGDLLSC GA RGVGELALYWAARAKLEEDAGMYLEARKLLDDGEAYISMPTQQKVM+KVMAAFEGRMNARAE DIDRLLEDSVDGLSLNDSAANSNSPASS PFRYDPNDLSTEDDTGSAQSAIKNLNFSKIAKESGG + GSNTSLTTRSGASPDWMRDAN+E+E DSQ ASS
Sbjct: 1 MEEVLSRKEKLAAWRAAKGKPLEAHKP-AAXXXXXXXXXXXXXXXXXGRAGKKDVAKGVLQARPGAGNRVNKRTAPPQRKPFQVDTRSIQQASERRVQPGTPIHSLKKRLKRTAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVPGHVNGVSRSLDSARTKEVSDYLKSQISEANMLLEIAGVDAARTLLGDLLSCAGAGRGVGELALYWAARAKLEEDAGMYLEARKLLDDGEAYISMPTQQKVMAKVMAAFEGRMNARAEADIDRLLEDSVDGLSLNDSAANSNSPASSTPFRYDPNDLSTEDDTGSAQSAIKNLNFSKIAKESGGRGGASSSTSGS-----------------GSNTSLTTRSGASPDWMRDANEEQEGDSQAASS 386
BLAST of mRNA_E-fasciculatus_F_contig14.2932.1 vs. uniprot
Match: D7G7W6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W6_ECTSI) HSP 1 Score: 97.8 bits (242), Expect = 3.280e-19 Identity = 48/63 (76.19%), Postives = 49/63 (77.78%), Query Frame = 1
Query: 1873 EVEANQRRHQGADSRSPQEGNGGHALNALMSHAVCCRLGRFIA*NHHHKGTKQAAVSNSCRAL 2061
+VEANQRR QGADSRS QEGNGGHAL LM HAVCCRLGRFIA HKGTKQA N RAL
Sbjct: 145 QVEANQRRRQGADSRSSQEGNGGHALKVLMRHAVCCRLGRFIAWKSQHKGTKQAVAGNGWRAL 207 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14.2932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14.2932.1 >prot_E-fasciculatus_F_contig14.2932.1 ID=prot_E-fasciculatus_F_contig14.2932.1|Name=mRNA_E-fasciculatus_F_contig14.2932.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=631bp MEEVLSRKEKLAAWRAAKGKPLQAHKATAAGGGGGGAAAGKGAAAAAGRAback to top mRNA from alignment at E-fasciculatus_F_contig14:38771..51900+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14.2932.1 ID=mRNA_E-fasciculatus_F_contig14.2932.1|Name=mRNA_E-fasciculatus_F_contig14.2932.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=13130bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14:38771..51900+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14:38771..51900+ >mRNA_E-fasciculatus_F_contig14.2932.1 ID=mRNA_E-fasciculatus_F_contig14.2932.1|Name=mRNA_E-fasciculatus_F_contig14.2932.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3786bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14:38771..51900+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |